Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR369G0825 Trochodendron aralioides HOM05D005347 ORTHO05D007838 0.0e+00 1618.2 815 100.0
Nn7g36281 Nelumbo nucifera HOM05D005347 ORTHO05D007838 0.0e+00 1540.0 808 93.9
TAR623G1548 Trochodendron aralioides HOM05D005347 ORTHO05D007838 0.0e+00 1538.9 808 94.4
TAR465G0003 Trochodendron aralioides HOM05D005347 ORTHO05D007838 0.0e+00 1535.0 808 94.3
PGR004G1765 Punica granatum HOM05D005347 ORTHO05D007838 0.0e+00 1528.8 808 93.7
Cfa016819 Carpinus fangiana HOM05D005347 ORTHO05D007838 0.0e+00 1528.5 808 93.6
Actinidia38547 Actinidia chinensis HOM05D005347 ORTHO05D007838 0.0e+00 1527.7 808 93.6
Actinidia17237 Actinidia chinensis HOM05D005347 ORTHO05D007838 0.0e+00 1524.6 808 93.4
Gorai.006G136500 Gossypium raimondii HOM05D005347 ORTHO05D007838 0.0e+00 1523.1 808 93.2
Dinv39601 Davidia involucrata HOM05D005347 ORTHO05D007838 0.0e+00 1522.3 808 92.6
Gohir.A09G122100 Gossypium hirsutum HOM05D005347 ORTHO05D007838 0.0e+00 1522.3 808 92.9
arahy.Tifrunner.gnm1.ann1.RSU8B2 Arachis hypogaea HOM05D005347 ORTHO05D007838 0.0e+00 1521.9 808 92.8
Ciclev10004154m.g Citrus clementina HOM05D005347 ORTHO05D007838 0.0e+00 1521.9 808 92.9
Nn2g15252 Nelumbo nucifera HOM05D005347 ORTHO05D007838 0.0e+00 1520.4 808 92.9
Duzib093G0142 Durio zibethinus HOM05D005347 ORTHO05D007838 0.0e+00 1516.9 808 92.6
Duzib128G0418 Durio zibethinus HOM05D005347 ORTHO05D007838 0.0e+00 1516.1 808 92.5
arahy.Tifrunner.gnm1.ann1.XR90DA Arachis hypogaea HOM05D005347 ORTHO05D007838 0.0e+00 1515.7 808 92.6
COL.COLO4_28282 Corchorus olitorius HOM05D005347 ORTHO05D007838 0.0e+00 1515.0 808 92.7
Eucgr.A02348 Eucalyptus grandis HOM05D005347 ORTHO05D007838 0.0e+00 1515.0 807 92.9
Glyma.10G097800 Glycine max HOM05D005347 ORTHO05D007838 0.0e+00 1514.6 808 92.1
Dinv12481 Davidia involucrata HOM05D005347 ORTHO05D007838 0.0e+00 1514.2 808 92.8
QL07p000318 Quercus lobata HOM05D005347 ORTHO05D007838 0.0e+00 1514.2 808 92.6
MSTRG.10814 Avicennia marina HOM05D005347 ORTHO05D007838 0.0e+00 1511.1 808 91.7
CSS0016317 Camellia sinensis var. sinensis HOM05D005347 ORTHO05D007838 0.0e+00 1510.7 808 92.1
Phvul.007G252700 Phaseolus vulgaris HOM05D005347 ORTHO05D007838 0.0e+00 1510.0 808 91.8
Cc06_g17100 Coffea canephora HOM05D005347 ORTHO05D007838 0.0e+00 1509.6 808 92.2
Hma1.2p1_2002F.1_g310730 Hydrangea macrophylla HOM05D005347 ORTHO05D007838 0.0e+00 1509.6 808 92.1
Hma1.2p1_2002F.1_g310740 Hydrangea macrophylla HOM05D005347 ORTHO05D007838 0.0e+00 1509.6 808 92.1
Manes.08G050600 Manihot esculenta HOM05D005347 ORTHO05D007838 0.0e+00 1509.2 808 92.1
vmacro09075 Vaccinium macrocarpon HOM05D005347 ORTHO05D007838 0.0e+00 1506.5 808 91.8
Atru.chr1.1096 Acer truncatum HOM05D005347 ORTHO05D007838 0.0e+00 1505.3 808 91.8
VMungo1383G0107 Vigna mungo HOM05D005347 ORTHO05D007838 0.0e+00 1505.3 808 91.6
Aqoxy2G00152 Aquilegia oxysepala HOM05D005347 ORTHO05D007838 0.0e+00 1505.0 808 91.3
CsaV3_4G011730 Cucumis sativus L. HOM05D005347 ORTHO05D007838 0.0e+00 1505.0 808 91.6
Glyma.19G139300 Glycine max HOM05D005347 ORTHO05D007838 0.0e+00 1504.6 808 91.8
MELO3C023131.2 Cucumis melo HOM05D005347 ORTHO05D007838 0.0e+00 1503.8 808 91.3
Lju124A41T48 Lonicera japonica HOM05D005347 ORTHO05D007838 0.0e+00 1503.4 817 91.6
Glyma.03G137000 Glycine max HOM05D005347 ORTHO05D007838 0.0e+00 1502.3 808 91.5
Hund05283 Selenicereus undatus HOM05D005347 ORTHO05D007838 0.0e+00 1501.5 808 91.1
SGA_v2.0_scaffold105G30411 Striga asiatica HOM05D005347 ORTHO05D007838 0.0e+00 1501.1 808 91.0
Peaxi162Scf00130g00022 Petunia axillaris HOM05D005347 ORTHO05D007838 0.0e+00 1500.0 808 91.1
Phvul.001G132200 Phaseolus vulgaris HOM05D005347 ORTHO05D007838 0.0e+00 1499.2 808 91.2
Sabra06G0035800 Salix brachista HOM05D005347 ORTHO05D007838 0.0e+00 1499.2 808 91.0
Sed0003738 Sechium edule HOM05D005347 ORTHO05D007838 0.0e+00 1499.2 808 90.8
ClCG04G000090 Citrullus lanatus HOM05D005347 ORTHO05D007838 0.0e+00 1498.8 808 91.0
Rhsim04G0102500 Rhododendron simsii HOM05D005347 ORTHO05D007838 0.0e+00 1498.8 808 91.7
MBI17_g13973_MAGBIO Magnolia biondii HOM05D005347 ORTHO05D007838 0.0e+00 1497.6 808 91.3
Oeu008920.1 Olea europaea HOM05D005347 ORTHO05D007838 0.0e+00 1497.3 808 91.1
CAN.G676.69 Capsicum annuum HOM05D005347 ORTHO05D007838 0.0e+00 1496.5 808 90.5
TWI53G0247 Tripterygium wilfordii HOM05D005347 ORTHO05D007838 0.0e+00 1496.1 808 90.7
HanXRQChr10g0288781 Helianthus annuus HOM05D005347 ORTHO05D007838 0.0e+00 1494.9 808 90.7
HanXRQChr10g0296641 Helianthus annuus HOM05D005347 ORTHO05D007838 0.0e+00 1494.9 808 90.7
Lj1g0017211 Lotus japonicus HOM05D005347 ORTHO05D007838 0.0e+00 1494.9 808 91.3
PGSC0003DMG400027276 Solanum tuberosum HOM05D005347 ORTHO05D007838 0.0e+00 1494.9 808 90.3
AUR62026037 Chenopodium quinoa HOM05D005347 ORTHO05D007838 0.0e+00 1494.6 808 91.0
Ca_26018_v3 Cicer arietinum L. HOM05D005347 ORTHO05D007838 0.0e+00 1494.6 808 90.7
Potri.006G051100 Populus trichocarpa HOM05D005347 ORTHO05D007838 0.0e+00 1494.2 808 91.0
Lalb_Chr25g0287111 Lupinus albus HOM05D005347 ORTHO05D007838 0.0e+00 1493.8 807 90.7
Prupe.7G061100 Prunus persica HOM05D005347 ORTHO05D007838 0.0e+00 1493.8 808 90.8
SalBow6G2907 Salvia bowleyana HOM05D005347 ORTHO05D007838 0.0e+00 1493.8 808 90.5
AUR62024447 Chenopodium quinoa HOM05D005347 ORTHO05D007838 0.0e+00 1493.4 808 90.8
Lalb_Chr20g0110491 Lupinus albus HOM05D005347 ORTHO05D007838 0.0e+00 1491.9 808 90.2
Solyc04g015750.3 Solanum lycopersicum HOM05D005347 ORTHO05D007838 0.0e+00 1491.5 808 90.2
Migut.J01759 Erythranthe guttata HOM05D005347 ORTHO05D007838 0.0e+00 1491.1 808 90.3
DCAR_013602 Daucus carota HOM05D005347 ORTHO05D007838 0.0e+00 1490.7 808 90.5
MD14G1072000 Malus domestica HOM05D005347 ORTHO05D007838 0.0e+00 1489.9 808 90.7
Sopen04g007830 Solanum pennellii HOM05D005347 ORTHO05D007838 0.0e+00 1489.6 808 90.1
MD12G1073700 Malus domestica HOM05D005347 ORTHO05D007838 0.0e+00 1489.2 808 90.6
Lsat_1_v5_gn_9_29020 Lactuca sativa HOM05D005347 ORTHO05D007838 0.0e+00 1488.0 808 90.3
ECA247G2461 Erigeron canadensis HOM05D005347 ORTHO05D007838 0.0e+00 1487.2 808 90.0
Aa31sc144G60 Aethionema arabicum HOM05D005347 ORTHO05D007838 0.0e+00 1486.1 808 89.7
PSO339G0901 Papaver somniferum HOM05D005347 ORTHO05D007838 0.0e+00 1485.7 808 90.0
PSO384G4351 Papaver somniferum HOM05D005347 ORTHO05D007838 0.0e+00 1485.3 808 90.0
EL10Ac3g07089 Beta vulgaris HOM05D005347 ORTHO05D007838 0.0e+00 1484.9 808 90.0
Cpa.g.sc92.51 Carica papaya HOM05D005347 ORTHO05D007838 0.0e+00 1484.5 808 91.0
Gohir.D09G118200 Gossypium hirsutum HOM05D005347 ORTHO05D007838 0.0e+00 1482.6 808 91.3
Carub.0006s1179 Capsella rubella HOM05D005347 ORTHO05D007838 0.0e+00 1476.5 808 89.2
Haze_19858 Corylus avellana HOM05D005347 ORTHO05D007838 0.0e+00 1476.5 808 91.0
FAN02G3940 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 1475.3 808 89.6
FvH4_6g23800 Fragaria vesca HOM05D005347 ORTHO05D007838 0.0e+00 1474.9 808 89.6
FAN14G0383 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 1474.9 808 89.6
FAN05G5756 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 1474.1 808 89.6
RcHm_v2.0_Chr3g0482331 Rosa chinensis HOM05D005347 ORTHO05D007838 0.0e+00 1474.1 808 89.4
CARHR199810 Cardamine hirsuta HOM05D005347 ORTHO05D007838 0.0e+00 1473.4 808 89.1
Psat6g120040 Pisum sativum HOM05D005347 ORTHO05D007838 0.0e+00 1471.8 808 88.9
Sp6g30390 Schrenkiella parvula HOM05D005347 ORTHO05D007838 0.0e+00 1469.9 808 88.9
Thhalv10012443m.g Eutrema salsugineum HOM05D005347 ORTHO05D007838 0.0e+00 1468.4 808 89.0
ATR0626G393 Amborella trichopoda HOM05D005347 ORTHO05D007838 0.0e+00 1466.4 808 89.1
AL6G24240 Arabidopsis lyrata HOM05D005347 ORTHO05D007838 0.0e+00 1466.4 808 88.5
AT5G13630 Arabidopsis thaliana HOM05D005347 ORTHO05D007838 0.0e+00 1464.1 808 88.5
Lsat_1_v5_gn_9_29121 Lactuca sativa HOM05D005347 ORTHO05D007838 0.0e+00 1461.0 870 83.9
C03p07120 Brassica napus HOM05D005347 ORTHO05D007838 0.0e+00 1460.7 808 88.5
BolC3t13211H Brassica oleracea HOM05D005347 ORTHO05D007838 0.0e+00 1460.7 808 88.5
FAN09G2062 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 1460.7 835 86.7
BcaB01g05345 Brassica carinata HOM05D005347 ORTHO05D007838 0.0e+00 1459.5 808 88.4
A03p06120 Brassica napus HOM05D005347 ORTHO05D007838 0.0e+00 1459.5 808 88.4
BraA03t09944Z Brassica rapa HOM05D005347 ORTHO05D007838 0.0e+00 1459.5 808 88.4
Zm00001eb433610 Zea mays HOM05D005347 ORTHO05D007838 0.0e+00 1452.6 808 87.7
HPP92_012089 Vanilla planifolia HOM05D005347 ORTHO05D007838 0.0e+00 1449.9 808 88.6
SEGI_14472 Sequoiadendron giganteum HOM05D005347 ORTHO05D007838 0.0e+00 1431.0 808 86.6
Ah.13g076460 Amaranthus hybridus HOM05D005347 ORTHO05D007838 0.0e+00 1424.8 808 87.0
CDE05G2234 Ceratophyllum demersum HOM05D005347 ORTHO05D007838 0.0e+00 1411.0 808 86.8
unitig_578.g15983 Utricularia gibba HOM05D005347 ORTHO05D007838 0.0e+00 1403.3 808 86.5
AagrBONN_evm.TU.Sc2ySwM_368.2268 Anthoceros agrestis HOM05D005347 ORTHO05D007838 0.0e+00 1377.1 808 82.3
Mapoly0008s0194 Marchantia polymorpha HOM05D005347 ORTHO05D007838 0.0e+00 1362.4 808 81.3
SMO347G0130 Selaginella moellendorffii HOM05D005347 ORTHO05D007838 0.0e+00 1351.3 810 80.9
Pp3c10_13960 Physcomitrium patens HOM05D005347 ORTHO05D007838 0.0e+00 1347.4 808 80.4
Pp3c10_13970 Physcomitrium patens HOM05D005347 ORTHO05D007838 0.0e+00 1347.4 808 80.4
CBR_g40549 Chara braunii HOM05D005347 ORTHO05D007838 0.0e+00 1345.9 808 80.4
CiPaw.10G033300 Carya illinoinensis HOM05D005347 ORTHO05D007838 0.0e+00 1280.8 685 92.1
Thecc.05G153600 Theobroma cacao HOM05D005347 ORTHO05D007838 0.0e+00 1272.7 684 92.3
Sc04g0002790 Simmondsia chinensis HOM05D005347 ORTHO05D007838 0.0e+00 1263.4 686 90.5
TPR.G10615 Trifolium pratense HOM05D005347 ORTHO05D007838 0.0e+00 1211.1 771 79.6
Cre07.g325500 Chlamydomonas reinhardtii HOM05D005347 ORTHO05D007838 0.0e+00 1191.4 812 71.6
MCO07G263 Micromonas commoda HOM05D005347 ORTHO05D007838 0.0e+00 1185.6 813 70.8
Os07g0656500 Oryza sativa ssp. japonica HOM05D005347 ORTHO05D007838 0.0e+00 1156.7 690 83.6
Oeu017946.1 Olea europaea HOM05D005347 ORTHO05D007838 0.0e+00 1095.9 807 72.1
GSVIVG01033277001 Vitis vinifera HOM05D005347 ORTHO05D007838 5.2e-300 1034.2 808 69.7
Nitab4.5_0005195g0040 Nicotiana tabacum HOM05D005347 ORTHO05D007838 2.7e-293 1011.9 546 89.9
Nitab4.5_0010636g0020 Nicotiana tabacum HOM05D005347 ORTHO05D007838 2.5e-286 988.8 534 89.9
TPR.G25646 Trifolium pratense HOM05D005347 ORTHO05D007838 1.0e-178 631.3 370 83.8
Zm00001eb066400 Zea mays HOM05D005347 ORTHO05D007838 3.2e-177 626.3 348 86.8
MCO07G355 Micromonas commoda HOM05D005347 ORTHO05D034305 5.4e-132 476.1 831 36.3
Cre11.g477625 Chlamydomonas reinhardtii HOM05D005347 ORTHO05D034305 1.3e-112 411.8 937 30.9
CBR_g6691 Chara braunii HOM05D005347 ORTHO05D034305 4.8e-104 383.3 813 32.0
TPR.G7382 Trifolium pratense HOM05D005347 ORTHO05D030226 1.1e-89 335.5 174 94.3
MD09G1118200 Malus domestica HOM05D005347 ORTHO05D007838 1.1e-71 275.8 155 86.5
PRCOL_00001535 Prasinoderma coloniale HOM05D005347 ORTHO05D007838 6.5e-61 240.0 678 28.6
TPR.G20810 Trifolium pratense HOM05D005347 ORTHO05D030226 1.2e-59 235.7 122 91.8
MD03G1176300 Malus domestica HOM05D005347 ORTHO05D021808 3.6e-59 234.2 124 88.7
FAN15G2164 Fragaria x ananassa HOM05D005347 ORTHO05D007838 6.4e-48 196.8 107 91.6
Nn2g10425 Nelumbo nucifera HOM05D005347 ORTHO05D277195 1.2e-30 139.4 139 51.1
Nn7g36276 Nelumbo nucifera HOM05D005347 ORTHO05D030226 1.1e-28 132.9 99 69.7
Pp3c5_16660 Physcomitrium patens HOM05D005347 ORTHO05D030226 1.4e-26 125.9 91 70.3


User provided reference genes

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