Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR369G0704 Trochodendron aralioides HOM05D004269 ORTHO05D007106 5.0e-263 910.6 470 100.0
MBI14_g24308_MAGBIO Magnolia biondii HOM05D004269 ORTHO05D007106 1.3e-218 763.1 470 83.8
Dinv35635 Davidia involucrata HOM05D004269 ORTHO05D007106 4.1e-217 758.1 471 83.7
GSVIVG01025529001 Vitis vinifera HOM05D004269 ORTHO05D007106 1.7e-215 752.7 471 82.8
Atru.chr8.1955 Acer truncatum HOM05D004269 ORTHO05D007106 1.4e-212 743.0 462 82.5
CSS0004421 Camellia sinensis var. sinensis HOM05D004269 ORTHO05D007106 3.4e-211 738.4 448 85.0
Lj2C99G10 Lonicera japonica HOM05D004269 ORTHO05D007106 7.5e-211 737.3 447 85.9
PSO206G0015 Papaver somniferum HOM05D004269 ORTHO05D007106 1.7e-210 736.1 471 81.3
Ciclev10011653m.g Citrus clementina HOM05D004269 ORTHO05D007106 1.9e-209 732.6 462 81.8
PSO339G5566 Papaver somniferum HOM05D004269 ORTHO05D007106 1.2e-208 729.9 502 76.9
QL05p010548 Quercus lobata HOM05D004269 ORTHO05D007106 1.2e-208 729.9 451 83.6
ECA238G4253 Erigeron canadensis HOM05D004269 ORTHO05D007106 1.6e-208 729.6 471 78.1
QL07p047335 Quercus lobata HOM05D004269 ORTHO05D007106 3.5e-208 728.4 451 83.6
Potri.012G115900 Populus trichocarpa HOM05D004269 ORTHO05D007106 1.0e-207 726.9 475 80.4
AUR62031166 Chenopodium quinoa HOM05D004269 ORTHO05D007106 5.0e-207 724.5 476 79.0
Cfa017428 Carpinus fangiana HOM05D004269 ORTHO05D007106 6.6e-207 724.2 464 81.7
Aqoxy2G02034 Aquilegia oxysepala HOM05D004269 ORTHO05D007106 1.2e-205 719.9 478 79.3
AUR62036580 Chenopodium quinoa HOM05D004269 ORTHO05D007106 1.2e-205 719.9 476 78.8
Haze_20743 Corylus avellana HOM05D004269 ORTHO05D007106 1.6e-205 719.5 476 79.4
PGSC0003DMG400008852 Solanum tuberosum HOM05D004269 ORTHO05D007106 5.2e-204 714.5 459 80.8
Cpa.g.sc11.168 Carica papaya HOM05D004269 ORTHO05D007106 1.2e-203 713.4 445 82.0
Solyc09g010420.4 Solanum lycopersicum HOM05D004269 ORTHO05D007106 1.5e-203 713.0 459 80.8
HanXRQChr14g0453741 Helianthus annuus HOM05D004269 ORTHO05D007106 5.8e-203 711.1 472 77.1
Sopen09g005160 Solanum pennellii HOM05D004269 ORTHO05D007106 9.9e-203 710.3 459 80.4
Hund02377 Selenicereus undatus HOM05D004269 ORTHO05D007106 1.3e-202 709.9 458 79.5
CDE05G0081 Ceratophyllum demersum HOM05D004269 ORTHO05D007106 2.4e-201 705.7 470 76.2
Nn2g10437 Nelumbo nucifera HOM05D004269 ORTHO05D007106 3.2e-201 705.3 451 81.8
Peaxi162Scf00039g01234 Petunia axillaris HOM05D004269 ORTHO05D007106 4.1e-201 704.9 434 83.9
Lalb_Chr06g0171031 Lupinus albus HOM05D004269 ORTHO05D007106 5.4e-201 704.5 451 80.3
MD04G1121900 Malus domestica HOM05D004269 ORTHO05D007106 5.4e-201 704.5 470 78.5
TWI74G1158 Tripterygium wilfordii HOM05D004269 ORTHO05D007106 5.4e-201 704.5 461 79.8
CiPaw.09G188900 Carya illinoinensis HOM05D004269 ORTHO05D007106 7.1e-201 704.1 462 78.6
Thecc.05G044300 Theobroma cacao HOM05D004269 ORTHO05D007106 7.1e-201 704.1 470 78.7
RcHm_v2.0_Chr3g0467271 Rosa chinensis HOM05D004269 ORTHO05D007106 1.2e-200 703.4 470 77.7
ATR0559G147 Amborella trichopoda HOM05D004269 ORTHO05D007106 3.5e-200 701.8 470 76.8
Sabra12G0084000 Salix brachista HOM05D004269 ORTHO05D007106 3.5e-200 701.8 502 75.9
EL10Ac8g18791 Beta vulgaris HOM05D004269 ORTHO05D007106 4.6e-200 701.4 472 76.3
Prupe.6G250400 Prunus persica HOM05D004269 ORTHO05D007106 7.8e-200 700.7 470 78.1
QL09p012946 Quercus lobata HOM05D004269 ORTHO05D007106 7.8e-200 700.7 442 82.1
PGR044G1633 Punica granatum HOM05D004269 ORTHO05D007106 1.0e-199 700.3 467 77.5
MD12G1138500 Malus domestica HOM05D004269 ORTHO05D007106 5.1e-199 698.0 463 78.8
CANSAT56G4185 Cannabis sativa HOM05D004269 ORTHO05D007106 1.5e-198 696.4 464 78.4
Psat6g067760 Pisum sativum HOM05D004269 ORTHO05D007106 5.6e-198 694.5 441 81.4
FvH4_6g14300 Fragaria vesca HOM05D004269 ORTHO05D007106 1.2e-197 693.3 470 77.2
arahy.Tifrunner.gnm1.ann1.5YT5MY Arachis hypogaea HOM05D004269 ORTHO05D007106 3.6e-197 691.8 444 79.7
Gorai.006G175100 Gossypium raimondii HOM05D004269 ORTHO05D007106 6.2e-197 691.0 472 77.3
Lsat_1_v5_gn_2_110500 Lactuca sativa HOM05D004269 ORTHO05D007106 6.2e-197 691.0 470 76.0
Gohir.D09G153600 Gossypium hirsutum HOM05D004269 ORTHO05D007106 1.1e-196 690.3 472 77.8
DCAR_009253 Daucus carota HOM05D004269 ORTHO05D007106 1.4e-196 689.9 469 77.4
Glyma.13G131900 Glycine max HOM05D004269 ORTHO05D007106 1.8e-196 689.5 447 80.5
Medtr1g068845 Medicago truncatula HOM05D004269 ORTHO05D007106 1.8e-196 689.5 441 81.0
TAR623G0301 Trochodendron aralioides HOM05D004269 ORTHO05D007106 2.4e-196 689.1 414 87.9
Ca_09614_v3 Cicer arietinum L. HOM05D004269 ORTHO05D007106 3.1e-196 688.7 441 81.0
Eucgr.K03158 Eucalyptus grandis HOM05D004269 ORTHO05D007106 3.1e-196 688.7 461 77.0
Lj5g0017615 Lotus japonicus HOM05D004269 ORTHO05D007106 3.1e-196 688.7 429 82.8
arahy.Tifrunner.gnm1.ann1.FJP50F Arachis hypogaea HOM05D004269 ORTHO05D007106 4.0e-196 688.3 444 79.5
CAN.G97.19 Capsicum annuum HOM05D004269 ORTHO05D007106 5.2e-196 688.0 457 78.6
Glyma.10G044300 Glycine max HOM05D004269 ORTHO05D007106 6.8e-196 687.6 441 81.0
Gohir.A09G158200 Gossypium hirsutum HOM05D004269 ORTHO05D007106 8.9e-196 687.2 472 77.1
Cc06_g02960 Coffea canephora HOM05D004269 ORTHO05D007106 1.5e-195 686.4 470 76.6
MSTRG.19100 Avicennia marina HOM05D004269 ORTHO05D007106 7.6e-195 684.1 471 76.4
Phvul.007G158000 Phaseolus vulgaris HOM05D004269 ORTHO05D007106 4.9e-194 681.4 447 80.1
CsaV3_3G035070 Cucumis sativus L. HOM05D004269 ORTHO05D007106 1.4e-193 679.9 451 77.2
MELO3C009277.2 Cucumis melo HOM05D004269 ORTHO05D007106 1.6e-192 676.4 449 77.3
THA.LOC104815237 Tarenaya hassleriana HOM05D004269 ORTHO05D007106 2.1e-192 676.0 471 74.9
Sed0027746 Sechium edule HOM05D004269 ORTHO05D007106 3.5e-192 675.2 462 76.6
BolC4t28100H Brassica oleracea HOM05D004269 ORTHO05D007106 7.8e-192 674.1 472 75.4
FAN14G0717 Fragaria x ananassa HOM05D004269 ORTHO05D007106 7.8e-192 674.1 442 79.6
BraA04t18341Z Brassica rapa HOM05D004269 ORTHO05D007106 1.0e-191 673.7 472 75.4
ClCG10G020940 Citrullus lanatus HOM05D004269 ORTHO05D007106 1.0e-191 673.7 451 77.8
FAN02G4217 Fragaria x ananassa HOM05D004269 ORTHO05D007106 1.0e-191 673.7 470 75.5
A04p28640 Brassica napus HOM05D004269 ORTHO05D007106 1.3e-191 673.3 472 75.6
BraA05t19815Z Brassica rapa HOM05D004269 ORTHO05D007106 1.3e-191 673.3 471 75.4
A05p08460 Brassica napus HOM05D004269 ORTHO05D007106 1.7e-191 672.9 471 75.2
BcaB06g28999 Brassica carinata HOM05D004269 ORTHO05D007106 2.3e-191 672.5 474 75.1
BcaC02g11857 Brassica carinata HOM05D004269 ORTHO05D007106 1.1e-190 670.2 471 74.7
Carub.0004s1942 Capsella rubella HOM05D004269 ORTHO05D007106 1.1e-190 670.2 471 75.2
vmacro08669 Vaccinium macrocarpon HOM05D004269 ORTHO05D007106 1.2e-189 666.8 461 77.9
AL4G33990 Arabidopsis lyrata HOM05D004269 ORTHO05D007106 1.6e-189 666.4 462 75.8
CARHR132110 Cardamine hirsuta HOM05D004269 ORTHO05D007106 2.8e-189 665.6 470 74.0
C04p10550 Brassica napus HOM05D004269 ORTHO05D007106 4.7e-189 664.8 471 74.5
BolC4t22646H Brassica oleracea HOM05D004269 ORTHO05D007106 4.7e-189 664.8 469 74.6
BcaB02g09282 Brassica carinata HOM05D004269 ORTHO05D007106 1.1e-188 663.7 471 75.2
Sp4g19820 Schrenkiella parvula HOM05D004269 ORTHO05D007106 1.8e-188 662.9 471 74.5
Duzib128G0641 Durio zibethinus HOM05D004269 ORTHO05D007106 3.1e-188 662.1 448 78.8
Aa31LG5G19670 Aethionema arabicum HOM05D004269 ORTHO05D007106 5.2e-188 661.4 471 74.3
Thhalv10016608m.g Eutrema salsugineum HOM05D004269 ORTHO05D007106 5.2e-188 661.4 471 74.7
Nitab4.5_0002077g0090 Nicotiana tabacum HOM05D004269 ORTHO05D007106 1.5e-187 659.8 409 83.4
SGA_v2.0_scaffold75G24934 Striga asiatica HOM05D004269 ORTHO05D007106 7.6e-187 657.5 490 72.0
C04p65960 Brassica napus HOM05D004269 ORTHO05D007106 8.4e-186 654.1 498 71.1
Sc20g0004610 Simmondsia chinensis HOM05D004269 ORTHO05D007106 3.0e-183 645.6 419 80.0
Manes.09G086800 Manihot esculenta HOM05D004269 ORTHO05D007106 4.3e-182 641.7 399 84.5
Os03g0279400 Oryza sativa ssp. japonica HOM05D004269 ORTHO05D007106 4.3e-182 641.7 427 76.6
Migut.J00361 Erythranthe guttata HOM05D004269 ORTHO05D007106 1.3e-181 640.2 438 77.2
TAR623G0331 Trochodendron aralioides HOM05D004269 ORTHO05D007106 1.8e-180 636.3 403 84.6
SalBow3G0454 Salvia bowleyana HOM05D004269 ORTHO05D007106 9.9e-179 630.6 552 63.9
Mapoly0082s0028 Marchantia polymorpha HOM05D004269 ORTHO05D007106 3.0e-175 619.0 422 74.4
AT2G37500 Arabidopsis thaliana HOM05D004269 ORTHO05D007106 1.9e-174 616.3 409 78.2
arahy.Tifrunner.gnm1.ann1.L55DKK Arachis hypogaea HOM05D004269 ORTHO05D007106 3.8e-170 602.1 393 79.4
TPR.G11806 Trifolium pratense HOM05D004269 ORTHO05D007106 9.3e-169 597.4 396 79.0
Pp3c9_2270 Physcomitrium patens HOM05D004269 ORTHO05D007106 3.5e-168 595.5 424 71.9
Nitab4.5_0009149g0030 Nicotiana tabacum HOM05D004269 ORTHO05D007106 6.7e-167 591.3 409 76.5
unitig_578.g15701 Utricularia gibba HOM05D004269 ORTHO05D007106 5.3e-164 581.6 444 68.9
HPP92_001489 Vanilla planifolia HOM05D004269 ORTHO05D007106 2.5e-161 572.8 386 75.1
SMO347G0094 Selaginella moellendorffii HOM05D004269 ORTHO05D007106 2.3e-159 566.2 423 69.7
Dinv37204 Davidia involucrata HOM05D004269 ORTHO05D007106 9.4e-153 544.3 345 83.8
Actinidia05298 Actinidia chinensis HOM05D004269 ORTHO05D007106 2.1e-152 543.1 471 66.2
EL10Ac7g17097 Beta vulgaris HOM05D004269 ORTHO05D007106 1.8e-140 503.4 430 66.5
Cre16.g694850 Chlamydomonas reinhardtii HOM05D004269 ORTHO05D007106 4.5e-139 498.8 432 60.6
AagrBONN_evm.TU.Sc2ySwM_228.5429 Anthoceros agrestis HOM05D004269 ORTHO05D007106 3.9e-135 485.7 360 69.4
Zm00001eb012670 Zea mays HOM05D004269 ORTHO05D007106 3.2e-129 466.1 329 71.7
PRCOL_00001324 Prasinoderma coloniale HOM05D004269 ORTHO05D007106 8.3e-125 451.4 437 57.9
VMungo0720G1352 Vigna mungo HOM05D004269 ORTHO05D007106 2.0e-123 446.8 302 79.1
MCO14G482 Micromonas commoda HOM05D004269 ORTHO05D007106 1.1e-121 441.0 434 56.7
Hma1.2p1_1535F.1_g289500 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 2.1e-112 410.2 253 85.0
SHI29092 Sapria himalayana HOM05D004269 ORTHO05D007106 3.1e-108 396.4 388 58.2
Actinidia13128 Actinidia chinensis HOM05D004269 ORTHO05D007106 2.3e-90 337.0 241 75.5
Rhsim04G0153900 Rhododendron simsii HOM05D004269 ORTHO05D007106 2.3e-87 327.0 228 76.8
Hma1.2p1_1535F.1_g289480 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 1.3e-85 321.2 195 83.1
Actinidia13127 Actinidia chinensis HOM05D004269 ORTHO05D007106 1.4e-84 317.8 202 81.2
Hma1.2p1_1004F.1_g246860 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 2.6e-78 297.0 204 75.0
CBR_g37471 Chara braunii HOM05D004269 ORTHO05D007106 6.4e-69 265.8 218 62.8
Hma1.2p1_1004F.1_g246850 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 1.0e-66 258.5 181 78.5
VMungo0720G1280 Vigna mungo HOM05D004269 ORTHO05D007106 1.1e-63 248.4 147 82.3
Cfa024613 Carpinus fangiana HOM05D004269 ORTHO05D007106 9.0e-55 218.8 476 35.3
SEGI_16124 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 1.6e-51 208.0 124 79.8
Potri.015G112400 Populus trichocarpa HOM05D004269 ORTHO05D007106 1.0e-37 162.2 141 62.4
SEGI_30751 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 5.0e-37 159.8 140 62.1
SEGI_32622 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 5.0e-37 159.8 137 63.5
Cc02_g24250 Coffea canephora HOM05D004269 ORTHO05D007106 2.7e-35 154.1 103 76.7
Lsat_1_v5_gn_4_171201 Lactuca sativa HOM05D004269 ORTHO05D000661 6.3e-32 142.9 264 37.9
Lsat_1_v5_gn_7_20760 Lactuca sativa HOM05D004269 ORTHO05D020149 9.1e-31 139.0 154 55.2
SEGI_12229 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 1.5e-30 138.3 118 63.6
Cfa017427 Carpinus fangiana HOM05D004269 ORTHO05D021565 2.0e-30 137.9 98 70.4
QL09p013305 Quercus lobata HOM05D004269 ORTHO05D010618 7.7e-30 136.0 101 74.3
Lsat_1_v5_gn_6_110780 Lactuca sativa HOM05D004269 ORTHO05D000661 3.8e-29 133.7 264 36.0
Lsat_1_v5_gn_1_18180 Lactuca sativa HOM05D000819 ORTHO05D000661 2.1e-19 101.3 121 51.2
SalBow6G0271 Salvia bowleyana HOM05D004269 ORTHO05D000571 4.7e-19 100.1 87 59.8
AUR62004247 Chenopodium quinoa HOM05D004269 ORTHO05D021565 2.6e-17 94.4 95 53.7
AUR62035732 Chenopodium quinoa HOM05D004269 ORTHO05D021565 5.7e-17 93.2 75 61.3
BcaC05g28037 Brassica carinata HOM05D004269 ORTHO05D013520 2.8e-16 90.9 137 47.4
BcaC01g04800 Brassica carinata HOM05D004269 ORTHO05D013520 3.7e-16 90.5 133 46.6
BolC5t33714H Brassica oleracea HOM05D004269 ORTHO05D013520 4.8e-16 90.1 133 45.9
C01p38510 Brassica napus HOM05D004269 ORTHO05D013520 1.1e-15 89.0 133 45.9
C02p38620 Brassica napus HOM05D004269 ORTHO05D013520 1.1e-15 89.0 133 45.9
C04p14230 Brassica napus HOM05D004269 ORTHO05D013520 1.1e-15 89.0 133 45.9
BolC5t30237H Brassica oleracea HOM05D004269 ORTHO05D013520 1.1e-15 89.0 133 45.9
C05p46330 Brassica napus HOM05D004269 ORTHO05D013520 1.8e-15 88.2 133 45.1
C02p59220 Brassica napus HOM05D004269 ORTHO05D013520 1.2e-14 85.5 78 60.3
Sabra15G0134100 Salix brachista HOM05D004269 ORTHO05D007106 1.6e-14 85.1 91 57.1
Lsat_1_v5_gn_1_104560 Lactuca sativa HOM05D001098 ORTHO05D003515 1.7e-13 81.6 46 76.1
Lsat_1_v5_gn_9_124300 Lactuca sativa HOM05D001098 ORTHO05D003515 1.7e-13 81.6 46 76.1
BolC6t36588H Brassica oleracea HOM05D004269 ORTHO05D013520 5.0e-13 80.1 135 43.7
BcaB08g34435 Brassica carinata HOM05D004269 ORTHO05D000659 1.1e-12 79.0 61 59.0
C07p30140 Brassica napus HOM05D004269 ORTHO05D013520 1.5e-12 78.6 104 49.0
BolC5t33363H Brassica oleracea HOM05D004269 ORTHO05D013520 1.5e-12 78.6 110 49.1
BcaC06g34343 Brassica carinata HOM05D004269 ORTHO05D013520 2.5e-12 77.8 81 55.6
C05p40550 Brassica napus HOM05D004269 ORTHO05D013520 7.2e-12 76.3 86 53.5
Lsat_1_v5_gn_7_15681 Lactuca sativa HOM05D004269 ORTHO05D007106 1.6e-11 75.1 165 36.4
ECA236G0058 Erigeron canadensis HOM05D000039 ORTHO05D000370 1.0e-10 72.4 64 62.5
AUR62005065 Chenopodium quinoa HOM05D018411 ORTHO05D021565 4.0e-10 70.5 82 50.0
COL.COLO4_35964 Corchorus olitorius HOM05D001211 ORTHO05D001084 1.2e-09 68.9 76 53.9
Lsat_1_v5_gn_3_125120 Lactuca sativa HOM05D004623 ORTHO05D005100 2.0e-09 68.2 177 33.9
Glyma.18G131800 Glycine max HOM05D004269 ORTHO05D213362 7.5e-09 66.2 46 63.0
CAN.G1327.6 Capsicum annuum HOM05D004269 ORTHO05D007861 2.2e-08 64.7 48 70.8
CARHR249580 Cardamine hirsuta HOM05D004269 ORTHO05D021565 1.1e-07 62.4 60 60.0
BcaC04g20716 Brassica carinata HOM05D004269 ORTHO05D013520 3.1e-07 60.8 45 68.9
BcaC07g37638 Brassica carinata HOM05D004269 ORTHO05D016737 3.5e-06 57.4 39 71.8
EL10Ac8g18739 Beta vulgaris HOM05D004269 ORTHO05D021565 4.5e-06 57.0 52 50.0
C06p14100 Brassica napus HOM05D004269 ORTHO05D013520 4.5e-06 57.0 46 65.2


User provided reference genes

Program Settings