Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR369G0673 Trochodendron aralioides HOM05D004463 ORTHO05D004724 5.3e-33 143.7 68 100.0
TAR636G2492 Trochodendron aralioides HOM05D004463 ORTHO05D004724 1.5e-27 125.6 67 86.6
Cfa001504 Carpinus fangiana HOM05D001680 ORTHO05D001596 5.5e-22 107.1 67 76.1
Rhsim09G0164600 Rhododendron simsii HOM05D004463 ORTHO05D004724 1.6e-21 105.5 60 78.3
Lj8C86T7 Lonicera japonica HOM05D004463 ORTHO05D004724 3.0e-20 101.3 68 72.1
CSS0035906 Camellia sinensis var. sinensis HOM05D004463 ORTHO05D004724 7.5e-19 96.7 59 76.3
Dinv25993 Davidia involucrata HOM05D004463 ORTHO05D004724 2.0e-16 88.6 59 72.9
Haze_17039 Corylus avellana HOM05D001446 ORTHO05D001360 4.5e-16 87.4 59 72.9
Gohir.D10G224732 Gossypium hirsutum HOM05D004463 ORTHO05D004724 4.5e-16 87.4 66 63.6
Hma1.2p1_0727F.1_g209210 Hydrangea macrophylla HOM05D004463 ORTHO05D004724 4.5e-16 87.4 59 69.5
COL.COLO4_14964 Corchorus olitorius HOM05D004463 ORTHO05D004724 5.9e-16 87.0 59 69.5
Duzib106G1221 Durio zibethinus HOM05D004463 ORTHO05D004724 5.9e-16 87.0 59 71.2
QL08p059074 Quercus lobata HOM05D004463 ORTHO05D004724 5.9e-16 87.0 59 71.2
MD01G1124300 Malus domestica HOM05D004463 ORTHO05D004724 1.7e-15 85.5 59 67.8
HPP92_007058 Vanilla planifolia HOM05D004463 ORTHO05D004724 1.7e-15 85.5 64 67.2
Gorai.005G248300 Gossypium raimondii HOM05D004463 ORTHO05D004724 2.9e-15 84.7 59 66.1
Peaxi162Scf00538g00125 Petunia axillaris HOM05D004463 ORTHO05D004724 2.9e-15 84.7 59 66.1
Rhsim11G0183400 Rhododendron simsii HOM05D000078 ORTHO05D004724 3.8e-15 84.3 62 62.9
Prupe.2G231800 Prunus persica HOM05D004463 ORTHO05D004724 8.5e-15 83.2 59 67.8
Thecc.10G047100 Theobroma cacao HOM05D004463 ORTHO05D004724 1.1e-14 82.8 59 66.1
Lsat_1_v5_gn_8_16561 Lactuca sativa HOM05D004463 ORTHO05D004724 1.5e-14 82.4 54 70.4
GSVIVG01011366001 Vitis vinifera HOM05D002216 ORTHO05D002011 1.9e-14 82.0 59 64.4
GSVIVG01016581001 Vitis vinifera HOM05D004463 ORTHO05D004724 2.5e-14 81.6 59 64.4
Manes.10G032800 Manihot esculenta HOM05D004463 ORTHO05D004724 5.5e-14 80.5 59 67.8
RcHm_v2.0_Chr1g0366331 Rosa chinensis HOM05D004463 ORTHO05D004724 5.5e-14 80.5 54 72.2
Aqoxy4G02979 Aquilegia oxysepala HOM05D004463 ORTHO05D004724 7.2e-14 80.1 73 61.6
ECA233G0628 Erigeron canadensis HOM05D001446 ORTHO05D001360 1.2e-13 79.3 59 67.8
FvH4_7g21972 Fragaria vesca HOM05D004463 ORTHO05D004724 1.2e-13 79.3 54 70.4
FAN01G1741 Fragaria x ananassa HOM05D004463 ORTHO05D004724 1.2e-13 79.3 54 70.4
FAN06G0682 Fragaria x ananassa HOM05D004463 ORTHO05D004724 1.2e-13 79.3 54 70.4
FAN06G1248 Fragaria x ananassa HOM05D004463 ORTHO05D004724 1.2e-13 79.3 54 70.4
FAN03G3339 Fragaria x ananassa HOM05D004463 ORTHO05D004724 4.7e-13 77.4 54 68.5
PSO339G5998 Papaver somniferum HOM05D004463 ORTHO05D004724 6.1e-13 77.0 64 67.2
PSO648G0094 Papaver somniferum HOM05D004463 ORTHO05D004724 6.1e-13 77.0 65 64.6
TPR.G32219 Trifolium pratense HOM05D004463 ORTHO05D004724 8.0e-13 76.6 51 76.5
CDE02G2851 Ceratophyllum demersum HOM05D003292 ORTHO05D004237 1.8e-12 75.5 54 72.2
HanXRQChr05g0143421 Helianthus annuus HOM05D004463 ORTHO05D004724 3.0e-12 74.7 51 70.6
PGR044G0901 Punica granatum HOM05D004463 ORTHO05D004724 3.0e-12 74.7 56 66.1
CiPaw.06G128800 Carya illinoinensis HOM05D004463 ORTHO05D004724 4.0e-12 74.3 51 70.6
PSO339G4128 Papaver somniferum HOM05D004463 ORTHO05D004724 5.2e-12 73.9 62 64.5
PSO384G1624 Papaver somniferum HOM05D004463 ORTHO05D004724 5.2e-12 73.9 62 64.5
Cpa.g.sc150.22 Carica papaya HOM05D004463 ORTHO05D004724 8.8e-12 73.2 51 68.6
Actinidia27858 Actinidia chinensis HOM05D000578 ORTHO05D000422 1.2e-11 72.8 50 66.0
arahy.Tifrunner.gnm1.ann1.0JY1T4 Arachis hypogaea HOM05D004463 ORTHO05D004724 1.2e-11 72.8 51 68.6
arahy.Tifrunner.gnm1.ann1.2L6AT5 Arachis hypogaea HOM05D004463 ORTHO05D004724 1.2e-11 72.8 51 68.6
Glyma.04G008700 Glycine max HOM05D004463 ORTHO05D004724 1.2e-11 72.8 51 68.6
Glyma.06G008500 Glycine max HOM05D004463 ORTHO05D004724 1.2e-11 72.8 51 68.6
Phvul.009G003600 Phaseolus vulgaris HOM05D004463 ORTHO05D004724 1.2e-11 72.8 51 68.6
QL11p046341 Quercus lobata HOM05D004463 ORTHO05D004724 1.2e-11 72.8 51 68.6
VMungo1309G0843 Vigna mungo HOM05D000018 ORTHO05D001040 1.2e-11 72.8 51 68.6
Prupe.8G085500 Prunus persica HOM05D004463 ORTHO05D004724 1.5e-11 72.4 52 67.3
Actinidia00571 Actinidia chinensis HOM05D004463 ORTHO05D004724 2.0e-11 72.0 59 59.3
Hund26868 Selenicereus undatus HOM05D004463 ORTHO05D004724 2.0e-11 72.0 51 70.6
ECA232G1454 Erigeron canadensis HOM05D004463 ORTHO05D004724 2.6e-11 71.6 51 66.7
Lj1g0018700 Lotus japonicus HOM05D004463 ORTHO05D004724 3.4e-11 71.2 51 66.7
CiPaw.13G045000 Carya illinoinensis HOM05D004463 ORTHO05D004724 4.4e-11 70.9 51 66.7
CiPaw.14G035900 Carya illinoinensis HOM05D004463 ORTHO05D004724 4.4e-11 70.9 51 66.7
Dinv39485 Davidia involucrata HOM05D004463 ORTHO05D004724 4.4e-11 70.9 51 68.6
MD00G1040200 Malus domestica HOM05D004463 ORTHO05D004724 4.4e-11 70.9 52 65.4
Psat5g004400 Pisum sativum HOM05D004463 ORTHO05D004724 4.4e-11 70.9 51 68.6
Psat5g004520 Pisum sativum HOM05D004463 ORTHO05D004724 4.4e-11 70.9 51 68.6
MD10G1063900 Malus domestica HOM05D004463 ORTHO05D004724 5.7e-11 70.5 52 65.4
Manes.15G189900 Manihot esculenta HOM05D004463 ORTHO05D004724 5.7e-11 70.5 60 60.0
Potri.004G161800 Populus trichocarpa HOM05D004463 ORTHO05D004724 5.7e-11 70.5 51 68.6
TPR.G32170 Trifolium pratense HOM05D004463 ORTHO05D004724 5.7e-11 70.5 51 68.6
GSVIVG01009823001 Vitis vinifera HOM05D004463 ORTHO05D004724 5.7e-11 70.5 51 66.7
Manes.05G152600 Manihot esculenta HOM05D004463 ORTHO05D004724 7.5e-11 70.1 51 68.6
GSVIVG01024180001 Vitis vinifera HOM05D004463 ORTHO05D004724 7.5e-11 70.1 51 66.7
Ca_15338_v3 Cicer arietinum L. HOM05D004463 ORTHO05D004724 9.8e-11 69.7 51 66.7
Sc20g0004810 Simmondsia chinensis HOM05D004463 ORTHO05D004724 9.8e-11 69.7 44 70.5
ClCG02G004610 Citrullus lanatus HOM05D004463 ORTHO05D004724 1.3e-10 69.3 51 64.7
Ciclev10029089m.g Citrus clementina HOM05D004463 ORTHO05D004724 1.3e-10 69.3 51 66.7
MELO3C013423.2 Cucumis melo HOM05D004463 ORTHO05D004724 1.3e-10 69.3 51 64.7
CsaV3_7G000350 Cucumis sativus L. HOM05D004463 ORTHO05D004724 1.3e-10 69.3 51 64.7
Duzib248G1389 Durio zibethinus HOM05D004463 ORTHO05D004724 1.3e-10 69.3 51 66.7
Gohir.A03G199000 Gossypium hirsutum HOM05D004463 ORTHO05D004724 1.3e-10 69.3 51 64.7
Gohir.D02G220400 Gossypium hirsutum HOM05D004463 ORTHO05D004724 1.3e-10 69.3 51 64.7
Sed0022229 Sechium edule HOM05D004463 ORTHO05D004724 1.3e-10 69.3 51 64.7
Atru.chr5.3137 Acer truncatum HOM05D004463 ORTHO05D004724 1.7e-10 68.9 52 65.4
COL.COLO4_26036 Corchorus olitorius HOM05D004463 ORTHO05D004724 1.7e-10 68.9 51 64.7
RcHm_v2.0_Chr6g0267601 Rosa chinensis HOM05D004463 ORTHO05D004724 1.7e-10 68.9 53 62.3
Sc25g0002840 Simmondsia chinensis HOM05D004463 ORTHO05D004724 1.7e-10 68.9 51 66.7
Thecc.02G075900 Theobroma cacao HOM05D004463 ORTHO05D004724 1.7e-10 68.9 51 64.7
CANSAT11G2458 Cannabis sativa HOM05D004463 ORTHO05D004724 2.2e-10 68.6 51 64.7
Eucgr.I01324 Eucalyptus grandis HOM05D004463 ORTHO05D004724 2.2e-10 68.6 60 66.7
Oeu036635.1 Olea europaea HOM05D004463 ORTHO05D004724 2.2e-10 68.6 51 64.7
HPP92_007060 Vanilla planifolia HOM05D004463 ORTHO05D004724 2.2e-10 68.6 56 64.3
Oeu046135.1 Olea europaea HOM05D004463 ORTHO05D004724 2.8e-10 68.2 48 66.7
Sed0016215 Sechium edule HOM05D004463 ORTHO05D004724 2.8e-10 68.2 51 66.7
Os10g0545300 Oryza sativa ssp. japonica HOM05D004463 ORTHO05D004724 3.7e-10 67.8 58 63.8
Sabra04G0108800 Salix brachista HOM05D004463 ORTHO05D004724 3.7e-10 67.8 48 68.8
Atru.chr13.360 Acer truncatum HOM05D004463 ORTHO05D004724 4.8e-10 67.4 51 66.7
Dinv42004 Davidia involucrata HOM05D004463 ORTHO05D004724 4.8e-10 67.4 62 59.7
Lalb_Chr23g0265191 Lupinus albus HOM05D004463 ORTHO05D004724 4.8e-10 67.4 51 62.7
Oeu055628.1 Olea europaea HOM05D004463 ORTHO05D004724 4.8e-10 67.4 51 64.7
EL10Ac7g16555 Beta vulgaris HOM05D031029 ORTHO05D004724 6.3e-10 67.0 47 66.0
PGR042G1049 Punica granatum HOM05D004463 ORTHO05D004724 8.3e-10 66.6 60 63.3
Cc02_g16980 Coffea canephora HOM05D004463 ORTHO05D004724 1.4e-09 65.9 50 66.0
Manes.17G001400 Manihot esculenta HOM05D004463 ORTHO05D004724 1.4e-09 65.9 51 62.7
FAN10G2262 Fragaria x ananassa HOM05D004463 ORTHO05D004724 1.8e-09 65.5 41 70.7
Potri.005G234700 Populus trichocarpa HOM05D004463 ORTHO05D004724 1.8e-09 65.5 57 63.2
Sabra05G0180900 Salix brachista HOM05D004463 ORTHO05D004724 1.8e-09 65.5 57 59.6
THA.LOC104807766 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 1.8e-09 65.5 42 64.3
Ah.08g211810 Amaranthus hybridus HOM05D031029 ORTHO05D004724 2.4e-09 65.1 47 66.0
A07p41130 Brassica napus HOM05D004463 ORTHO05D004724 2.4e-09 65.1 53 62.3
DCAR_022913 Daucus carota HOM05D004463 ORTHO05D004724 2.4e-09 65.1 51 60.8
Dinv23459 Davidia involucrata HOM05D004463 ORTHO05D004724 2.4e-09 65.1 64 57.8
Gorai.011G255700 Gossypium raimondii HOM05D004463 ORTHO05D004724 2.4e-09 65.1 59 55.9
THA.LOC104813804 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 2.4e-09 65.1 51 64.7
C06p49550 Brassica napus HOM05D004463 ORTHO05D004724 3.1e-09 64.7 53 62.3
BolC6t39994H Brassica oleracea HOM05D004463 ORTHO05D004724 3.1e-09 64.7 53 62.3
Thhalv10019006m.g Eutrema salsugineum HOM05D004463 ORTHO05D004724 3.1e-09 64.7 48 70.8
FvH4_2g10323 Fragaria vesca HOM05D004463 ORTHO05D004724 3.1e-09 64.7 54 61.1
FAN20G1990 Fragaria x ananassa HOM05D004463 ORTHO05D004724 3.1e-09 64.7 54 61.1
FAN24G1814 Fragaria x ananassa HOM05D004463 ORTHO05D004724 3.1e-09 64.7 54 61.1
FAN27G0878 Fragaria x ananassa HOM05D004463 ORTHO05D004724 3.1e-09 64.7 54 61.1
Sc19g0006390 Simmondsia chinensis HOM05D004463 ORTHO05D004724 3.1e-09 64.7 31 77.4
Solyc10g054330.3 Solanum lycopersicum HOM05D004463 ORTHO05D004724 5.4e-09 63.9 53 62.3
FAN15G3389 Fragaria x ananassa HOM05D004463 ORTHO05D004724 7.0e-09 63.5 54 57.4
Nitab4.5_0001317g0040 Nicotiana tabacum HOM05D004463 ORTHO05D004724 7.0e-09 63.5 51 58.8
SEGI_31170 Sequoiadendron giganteum HOM05D004463 ORTHO05D004724 7.0e-09 63.5 66 59.1
Sopen10g024240 Solanum pennellii HOM05D004463 ORTHO05D004724 7.0e-09 63.5 54 61.1
PGSC0003DMG400026665 Solanum tuberosum HOM05D004463 ORTHO05D004724 7.0e-09 63.5 54 61.1
Ciclev10002195m.g Citrus clementina HOM05D004463 ORTHO05D004724 1.6e-08 62.4 51 62.7
Zm00001eb393940 Zea mays HOM05D004463 ORTHO05D004724 2.0e-08 62.0 59 59.3
Aa31LG4G5800 Aethionema arabicum HOM05D004463 ORTHO05D004724 2.7e-08 61.6 53 60.4
A06p48750 Brassica napus HOM05D004463 ORTHO05D004724 3.5e-08 61.2 60 53.3
BolC7t46753H Brassica oleracea HOM05D004463 ORTHO05D004724 3.5e-08 61.2 60 53.3
Duzib052G0336 Durio zibethinus HOM05D004463 ORTHO05D004724 3.5e-08 61.2 51 58.8
Migut.B00180 Erythranthe guttata HOM05D004463 ORTHO05D004724 3.5e-08 61.2 50 62.0
Rhsim05G0068600 Rhododendron simsii HOM05D004463 ORTHO05D004724 5.9e-08 60.5 59 52.5
C07p63410 Brassica napus HOM05D004463 ORTHO05D004724 7.7e-08 60.1 51 56.9
Sp5g30690 Schrenkiella parvula HOM05D004463 ORTHO05D004724 7.7e-08 60.1 48 66.7
AL2G35540 Arabidopsis lyrata HOM05D004463 ORTHO05D004724 1.0e-07 59.7 50 62.0
Carub.0002s2242 Capsella rubella HOM05D004463 ORTHO05D004724 1.0e-07 59.7 50 62.0
AT1G75560 Arabidopsis thaliana HOM05D004463 ORTHO05D004724 1.3e-07 59.3 52 59.6
THA.LOC104809337 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 1.3e-07 59.3 51 60.8
CAN.G95.2 Capsicum annuum HOM05D004463 ORTHO05D004724 1.7e-07 58.9 61 50.8
AUR62014431 Chenopodium quinoa HOM05D004463 ORTHO05D004724 1.7e-07 58.9 41 61.0
BraA06t27741Z Brassica rapa HOM05D004463 ORTHO05D004724 2.9e-07 58.2 61 52.5
Hund00218 Selenicereus undatus HOM05D004463 ORTHO05D004724 2.9e-07 58.2 48 60.4
TWI31G1301 Tripterygium wilfordii HOM05D004463 ORTHO05D004724 2.9e-07 58.2 50 58.0
CARHR247750 Cardamine hirsuta HOM05D004463 ORTHO05D004724 5.0e-07 57.4 60 50.0
Hma1.2p1_0066F.1_g035800 Hydrangea macrophylla HOM05D004463 ORTHO05D004724 5.0e-07 57.4 57 52.6
SGA_v2.0_scaffold326G48748 Striga asiatica HOM05D004463 ORTHO05D004724 5.0e-07 57.4 50 54.0
Thecc.08G037600 Theobroma cacao HOM05D004463 ORTHO05D004724 1.1e-06 56.2 51 56.9
TWI36G1578 Tripterygium wilfordii HOM05D004463 ORTHO05D004724 3.3e-06 54.7 51 56.9
THA.LOC104804116 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 4.2e-06 54.3 60 55.0
AUR62034566 Chenopodium quinoa HOM05D004463 ORTHO05D004724 5.5e-06 53.9 55 49.1


User provided reference genes

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