Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR369G0619 Trochodendron aralioides HOM05D001003 ORTHO05D003884 8.0e-92 340.5 183 100.0
TAR626G0868 Trochodendron aralioides HOM05D001003 ORTHO05D003884 9.1e-88 327.0 183 97.3
TAR371G0663 Trochodendron aralioides HOM05D001003 ORTHO05D003884 1.1e-80 303.5 166 97.6
Nn3g17345 Nelumbo nucifera HOM05D001003 ORTHO05D003884 9.5e-61 237.3 171 73.1
Nn4g23292 Nelumbo nucifera HOM05D001003 ORTHO05D003884 9.5e-61 237.3 166 75.3
Ciclev10030950m.g Citrus clementina HOM05D001003 ORTHO05D003884 1.1e-56 223.8 167 76.6
COL.COLO4_27957 Corchorus olitorius HOM05D001003 ORTHO05D003884 1.1e-56 223.8 166 75.3
Dinv16693 Davidia involucrata HOM05D001003 ORTHO05D003884 2.7e-55 219.2 173 71.1
QL03p069879 Quercus lobata HOM05D001003 ORTHO05D003884 3.5e-55 218.8 167 75.4
Thecc.02G338800 Theobroma cacao HOM05D001003 ORTHO05D003884 1.0e-54 217.2 167 73.1
CiPaw.05G129200 Carya illinoinensis HOM05D001003 ORTHO05D003884 1.7e-54 216.5 167 73.7
Duzib248G0508 Durio zibethinus HOM05D001003 ORTHO05D003884 1.7e-54 216.5 167 73.1
Manes.05G106700 Manihot esculenta HOM05D001003 ORTHO05D003884 5.1e-54 214.9 167 74.9
Potri.008G091700 Populus trichocarpa HOM05D001003 ORTHO05D003884 2.5e-53 212.6 167 72.5
Cfa008922 Carpinus fangiana HOM05D001003 ORTHO05D003884 7.3e-53 211.1 167 73.1
Gohir.D04G190700 Gossypium hirsutum HOM05D001003 ORTHO05D003884 9.5e-53 210.7 167 71.3
Gorai.012G186100 Gossypium raimondii HOM05D001003 ORTHO05D003884 9.5e-53 210.7 167 71.3
Sabra08G0068700 Salix brachista HOM05D001003 ORTHO05D003884 2.1e-52 209.5 167 71.9
Haze_11951 Corylus avellana HOM05D001003 ORTHO05D003884 2.8e-52 209.1 167 72.5
Duzib251G0588 Durio zibethinus HOM05D001003 ORTHO05D003884 1.1e-51 207.2 167 71.9
Gohir.D13G078700 Gossypium hirsutum HOM05D001003 ORTHO05D003884 3.1e-51 205.7 166 71.1
Manes.01G031800 Manihot esculenta HOM05D001003 ORTHO05D003884 3.1e-51 205.7 167 70.1
Prupe.1G280400 Prunus persica HOM05D001003 ORTHO05D003884 4.0e-51 205.3 167 73.7
Gorai.013G090000 Gossypium raimondii HOM05D001003 ORTHO05D003884 8.9e-51 204.1 166 70.5
CANSAT64G2791 Cannabis sativa HOM05D001003 ORTHO05D003884 1.2e-50 203.8 167 70.1
RcHm_v2.0_Chr4g0439071 Rosa chinensis HOM05D001003 ORTHO05D003884 1.2e-50 203.8 167 72.5
Lj6A783T47 Lonicera japonica HOM05D001003 ORTHO05D003884 3.4e-50 202.2 169 69.2
PSO063G7182 Papaver somniferum HOM05D001003 ORTHO05D003884 3.4e-50 202.2 166 66.9
PGR016G0006 Punica granatum HOM05D001003 ORTHO05D003884 3.4e-50 202.2 167 70.1
PSO063G7276 Papaver somniferum HOM05D001003 ORTHO05D003884 9.9e-50 200.7 166 66.3
Gohir.A13G078500 Gossypium hirsutum HOM05D001003 ORTHO05D003884 1.3e-49 200.3 166 69.3
TWI79G0452 Tripterygium wilfordii HOM05D001003 ORTHO05D003884 1.3e-49 200.3 167 68.3
Atru.chr11.1708 Acer truncatum HOM05D001003 ORTHO05D003884 2.9e-49 199.1 167 70.1
Potri.010G163200 Populus trichocarpa HOM05D001003 ORTHO05D003884 2.9e-49 199.1 167 68.9
Cc11_g12510 Coffea canephora HOM05D001003 ORTHO05D003884 6.4e-49 198.0 167 68.3
FvH4_4g30660 Fragaria vesca HOM05D001003 ORTHO05D003884 8.4e-49 197.6 167 70.7
FAN12G4096 Fragaria x ananassa HOM05D001003 ORTHO05D003884 8.4e-49 197.6 167 70.7
Actinidia12306 Actinidia chinensis HOM05D001003 ORTHO05D003884 1.1e-48 197.2 169 68.6
CSS0022092 Camellia sinensis var. sinensis HOM05D001003 ORTHO05D003884 1.4e-48 196.8 169 69.8
CSS0040469 Camellia sinensis var. sinensis HOM05D001003 ORTHO05D003884 1.4e-48 196.8 169 69.8
Aqoxy3G03506 Aquilegia oxysepala HOM05D001003 ORTHO05D003884 1.9e-48 196.4 166 70.5
Cpa.g.sc1.74 Carica papaya HOM05D001003 ORTHO05D003884 3.2e-48 195.7 168 67.9
CAN.G1638.2 Capsicum annuum HOM05D001003 ORTHO05D003884 4.1e-48 195.3 167 64.7
ClCG05G023970 Citrullus lanatus HOM05D001003 ORTHO05D003884 4.1e-48 195.3 167 69.5
MBI19_g43435_MAGBIO Magnolia biondii HOM05D001003 ORTHO05D003884 4.1e-48 195.3 167 68.9
GSVIVG01012479001 Vitis vinifera HOM05D001003 ORTHO05D003884 7.1e-48 194.5 136 77.2
FAN22G1214 Fragaria x ananassa HOM05D001003 ORTHO05D003884 9.2e-48 194.1 167 69.5
Nitab4.5_0005448g0010 Nicotiana tabacum HOM05D001003 ORTHO05D003884 9.2e-48 194.1 167 64.1
Duzib268G0875 Durio zibethinus HOM05D001003 ORTHO05D003884 1.6e-47 193.4 167 68.3
MELO3C012129.2 Cucumis melo HOM05D001003 ORTHO05D003884 2.1e-47 193.0 167 68.9
CsaV3_5G033080 Cucumis sativus L. HOM05D001003 ORTHO05D003884 2.1e-47 193.0 167 68.9
Peaxi162Scf00222g00123 Petunia axillaris HOM05D001003 ORTHO05D003884 3.5e-47 192.2 167 65.3
TWI75G0974 Tripterygium wilfordii HOM05D001003 ORTHO05D003884 3.5e-47 192.2 167 66.5
FAN17G2835 Fragaria x ananassa HOM05D001003 ORTHO05D003884 4.6e-47 191.8 167 69.5
Sed0009563 Sechium edule HOM05D001003 ORTHO05D003884 4.6e-47 191.8 167 67.7
MD13G1067800 Malus domestica HOM05D001003 ORTHO05D003884 6.0e-47 191.4 168 71.4
Hma1.2p1_0357F.1_g134320 Hydrangea macrophylla HOM05D001003 ORTHO05D003884 7.8e-47 191.0 170 71.8
PGSC0003DMG400028336 Solanum tuberosum HOM05D001003 ORTHO05D003884 1.0e-46 190.7 167 64.1
Hund25203 Selenicereus undatus HOM05D001003 ORTHO05D003884 1.3e-46 190.3 167 68.9
Sopen05g007610 Solanum pennellii HOM05D001003 ORTHO05D003884 2.3e-46 189.5 167 63.5
CSS0002914 Camellia sinensis var. sinensis HOM05D001003 ORTHO05D003884 7.3e-45 184.5 170 65.9
Nitab4.5_0000391g0090 Nicotiana tabacum HOM05D001003 ORTHO05D003884 7.3e-45 184.5 167 63.5
Lj2g0023172 Lotus japonicus HOM05D001003 ORTHO05D003884 1.2e-44 183.7 166 65.1
Sed0024561 Sechium edule HOM05D001003 ORTHO05D003884 2.1e-44 183.0 166 65.1
Lj2g0027573 Lotus japonicus HOM05D001003 ORTHO05D003884 3.6e-44 182.2 166 64.5
AUR62005856 Chenopodium quinoa HOM05D001003 ORTHO05D003884 4.0e-43 178.7 168 64.9
AUR62032848 Chenopodium quinoa HOM05D001003 ORTHO05D003884 4.0e-43 178.7 168 64.9
Hma1.2p1_0354F.1_g133760 Hydrangea macrophylla HOM05D001003 ORTHO05D003884 1.2e-42 177.2 168 64.9
Ah.02g129330 Amaranthus hybridus HOM05D001003 ORTHO05D003884 3.4e-42 175.6 172 63.4
Dinv34102 Davidia involucrata HOM05D001003 ORTHO05D003884 4.4e-42 175.3 166 62.7
EL10Ac6g13274 Beta vulgaris HOM05D001003 ORTHO05D003884 7.6e-42 174.5 167 64.7
Phvul.002G091400 Phaseolus vulgaris HOM05D001003 ORTHO05D003884 7.6e-42 174.5 168 62.5
Glyma.20G030100 Glycine max HOM05D001003 ORTHO05D003884 9.9e-42 174.1 167 59.3
arahy.Tifrunner.gnm1.ann1.LC0XC4 Arachis hypogaea HOM05D001003 ORTHO05D003884 1.3e-41 173.7 167 62.9
Ca_25945_v3 Cicer arietinum L. HOM05D001003 ORTHO05D003884 1.7e-41 173.3 167 59.9
DCAR_007176 Daucus carota HOM05D001003 ORTHO05D003884 1.7e-41 173.3 167 62.3
VMungo1215G0244 Vigna mungo HOM05D001003 ORTHO05D003884 2.2e-41 172.9 171 61.4
Glyma.01G053300 Glycine max HOM05D001003 ORTHO05D003884 6.4e-41 171.4 168 63.1
THA.LOC104822031 Tarenaya hassleriana HOM05D001003 ORTHO05D003884 1.1e-40 170.6 170 61.2
Glyma.02G111800 Glycine max HOM05D001003 ORTHO05D003884 7.1e-40 167.9 167 61.1
THA.LOC104822032 Tarenaya hassleriana HOM05D001003 ORTHO05D003884 9.3e-40 167.5 171 62.0
Ah.03g134630 Amaranthus hybridus HOM05D001003 ORTHO05D003884 1.6e-39 166.8 167 63.5
arahy.Tifrunner.gnm1.ann1.2M98J4 Arachis hypogaea HOM05D001003 ORTHO05D003884 6.0e-39 164.9 167 59.3
arahy.Tifrunner.gnm1.ann1.TY171H Arachis hypogaea HOM05D001003 ORTHO05D003884 6.0e-39 164.9 167 59.3
TPR.G19939 Trifolium pratense HOM05D001003 ORTHO05D003884 6.0e-39 164.9 167 61.7
Ca_26773_v3 Cicer arietinum L. HOM05D001003 ORTHO05D003884 7.8e-39 164.5 167 61.7
Oeu021090.2 Olea europaea HOM05D001003 ORTHO05D003884 7.8e-39 164.5 168 58.3
Lalb_Chr17g0340901 Lupinus albus HOM05D001003 ORTHO05D003884 1.0e-38 164.1 168 57.7
Psat2g127720 Pisum sativum HOM05D001003 ORTHO05D003884 1.3e-38 163.7 167 60.5
Sc04g0007840 Simmondsia chinensis HOM05D001003 ORTHO05D003884 1.7e-38 163.3 168 61.9
MBI16_g14989_MAGBIO Magnolia biondii HOM05D001003 ORTHO05D003884 2.3e-38 162.9 168 61.9
Glyma.07G227700 Glycine max HOM05D001003 ORTHO05D003884 3.0e-38 162.5 167 55.7
vmacro16352 Vaccinium macrocarpon HOM05D001003 ORTHO05D003884 3.9e-38 162.2 174 62.1
AL2G28530 Arabidopsis lyrata HOM05D001003 ORTHO05D003884 5.1e-38 161.8 175 59.4
AT1G69420 Arabidopsis thaliana HOM05D001003 ORTHO05D003884 5.1e-38 161.8 175 59.4
Rhsim12G0077800 Rhododendron simsii HOM05D001003 ORTHO05D003884 5.1e-38 161.8 179 55.9
Medtr5g042870 Medicago truncatula HOM05D001003 ORTHO05D003884 1.1e-37 160.6 167 60.5
DCAR_030990 Daucus carota HOM05D001003 ORTHO05D003884 1.5e-37 160.2 167 57.5
Psat7g154200 Pisum sativum HOM05D001003 ORTHO05D003884 1.5e-37 160.2 167 58.1
Medtr4g082560 Medicago truncatula HOM05D001003 ORTHO05D003884 1.9e-37 159.8 167 58.1
VMungo0251G2922 Vigna mungo HOM05D001003 ORTHO05D003884 1.9e-37 159.8 167 56.3
Carub.0002s1602 Capsella rubella HOM05D001003 ORTHO05D003884 2.5e-37 159.5 175 58.3
CARHR062300 Cardamine hirsuta HOM05D001003 ORTHO05D003884 2.5e-37 159.5 173 60.1
arahy.Tifrunner.gnm1.ann1.I0GXIP Arachis hypogaea HOM05D001003 ORTHO05D003884 3.3e-37 159.1 167 60.5
Thhalv10018316m.g Eutrema salsugineum HOM05D001003 ORTHO05D003884 3.3e-37 159.1 175 58.9
MSTRG.733 Avicennia marina HOM05D001003 ORTHO05D003884 4.3e-37 158.7 172 55.2
Sp5g24470 Schrenkiella parvula HOM05D001003 ORTHO05D003884 4.3e-37 158.7 175 58.3
Rhsim12G0133200 Rhododendron simsii HOM05D001003 ORTHO05D003884 9.6e-37 157.5 175 60.0
Aa31LG4G11450 Aethionema arabicum HOM05D001003 ORTHO05D003884 1.3e-36 157.1 179 57.5
THA.LOC104808647 Tarenaya hassleriana HOM05D001003 ORTHO05D003884 1.6e-36 156.8 173 60.1
Oeu016759.2 Olea europaea HOM05D001003 ORTHO05D003884 6.2e-36 154.8 156 57.1
PSO478G5070 Papaver somniferum HOM05D001003 ORTHO05D003884 8.1e-36 154.5 166 56.6
PSO017G6613 Papaver somniferum HOM05D001003 ORTHO05D003884 1.1e-35 154.1 175 57.1
A07p35720 Brassica napus HOM05D001003 ORTHO05D003884 4.0e-35 152.1 180 56.7
C06p40510 Brassica napus HOM05D001003 ORTHO05D003884 4.0e-35 152.1 180 56.7
BolC6t39380H Brassica oleracea HOM05D001003 ORTHO05D003884 4.0e-35 152.1 180 56.7
BraA07t31159Z Brassica rapa HOM05D001003 ORTHO05D003884 4.0e-35 152.1 180 56.7
BcaB03g15893 Brassica carinata HOM05D001003 ORTHO05D003884 5.3e-35 151.8 180 56.7
BcaB03g15903 Brassica carinata HOM05D001003 ORTHO05D003884 9.0e-35 151.0 179 55.3
SalBow2G2671 Salvia bowleyana HOM05D001003 ORTHO05D003884 2.0e-34 149.8 168 57.7
SalBow2G3343 Salvia bowleyana HOM05D001003 ORTHO05D003884 2.0e-34 149.8 170 57.1
Phvul.002G103600 Phaseolus vulgaris HOM05D001003 ORTHO05D003884 3.4e-34 149.1 167 55.1
ATR0730G187 Amborella trichopoda HOM05D001003 ORTHO05D003884 4.9e-33 145.2 175 57.7
Os03g0209500 Oryza sativa ssp. japonica HOM05D001003 ORTHO05D003884 6.4e-33 144.8 166 52.4
Oeu057653.1 Olea europaea HOM05D001003 ORTHO05D003884 2.4e-32 142.9 135 61.5
arahy.Tifrunner.gnm1.ann1.J381VT Arachis hypogaea HOM05D001003 ORTHO05D003884 4.2e-32 142.1 164 57.3
BcaB03g15471 Brassica carinata HOM05D001003 ORTHO05D003884 1.2e-31 140.6 175 54.9
HPP92_020456 Vanilla planifolia HOM05D001003 ORTHO05D003884 1.2e-31 140.6 168 52.4
unitig_8.g3189 Utricularia gibba HOM05D001003 ORTHO05D003884 1.6e-31 140.2 170 50.6
Zm00001eb326590 Zea mays HOM05D001003 ORTHO05D003884 2.1e-31 139.8 167 53.9
ECA233G1502 Erigeron canadensis HOM05D001003 ORTHO05D003884 4.6e-31 138.7 176 54.0
Lalb_Chr09g0329131 Lupinus albus HOM05D001003 ORTHO05D003884 7.9e-31 137.9 166 53.0
THA.LOC104822904 Tarenaya hassleriana HOM05D001003 ORTHO05D003884 7.9e-31 137.9 169 55.6
Gohir.A04G146300 Gossypium hirsutum HOM05D001003 ORTHO05D003884 1.0e-30 137.5 100 73.0
unitig_22.g6501 Utricularia gibba HOM05D001003 ORTHO05D003884 1.8e-30 136.7 175 48.6
BcaB05g24450 Brassica carinata HOM05D001003 ORTHO05D003884 2.3e-30 136.3 177 54.8
HanXRQChr08g0211101 Helianthus annuus HOM05D001003 ORTHO05D003884 3.9e-30 135.6 176 52.8
HanXRQChr12g0361761 Helianthus annuus HOM05D001003 ORTHO05D003884 1.1e-29 134.0 174 53.4
Zm00001eb108370 Zea mays HOM05D001003 ORTHO05D003884 1.1e-29 134.0 167 51.5
Lsat_1_v5_gn_8_49341 Lactuca sativa HOM05D001003 ORTHO05D003884 2.5e-29 132.9 179 52.5
SGA_v2.0_scaffold36G14416 Striga asiatica HOM05D001003 ORTHO05D003884 1.3e-28 130.6 174 51.7
TPR.G34088 Trifolium pratense HOM05D001003 ORTHO05D003884 2.8e-28 129.4 116 59.5
SGA_v2.0_scaffold16G07738 Striga asiatica HOM05D001003 ORTHO05D003884 6.2e-28 128.3 170 50.0
BcaC08g45893 Brassica carinata HOM05D001003 ORTHO05D003884 1.8e-27 126.7 174 52.9
C06p36980 Brassica napus HOM05D001003 ORTHO05D003884 1.8e-27 126.7 174 52.9
BolC6t38808H Brassica oleracea HOM05D001003 ORTHO05D003884 1.8e-27 126.7 174 52.9
BraA07t30790Z Brassica rapa HOM05D001003 ORTHO05D003884 3.1e-27 125.9 173 51.4
C02p26350 Brassica napus HOM05D001003 ORTHO05D003884 2.6e-26 122.9 176 50.0
BcaC03g15082 Brassica carinata HOM05D001003 ORTHO05D003884 4.5e-26 122.1 176 50.0
CDE07G1373 Ceratophyllum demersum HOM05D001003 ORTHO05D003884 4.5e-26 122.1 166 47.6
BraA02t06643Z Brassica rapa HOM05D001003 ORTHO05D003884 5.8e-26 121.7 178 49.4
Zm00001eb007140 Zea mays HOM05D001003 ORTHO05D003884 9.9e-26 120.9 166 50.0
A02p15900 Brassica napus HOM05D001003 ORTHO05D003884 2.2e-25 119.8 178 48.3
A07p31630 Brassica napus HOM05D001003 ORTHO05D003884 3.8e-25 119.0 159 52.8
BolC2t08708H Brassica oleracea HOM05D001003 ORTHO05D003884 3.8e-25 119.0 175 49.1
HPP92_010146 Vanilla planifolia HOM05D001003 ORTHO05D003884 1.1e-24 117.5 166 47.6
unitig_749.g13212 Utricularia gibba HOM05D001003 ORTHO05D003884 1.4e-24 117.1 174 47.1
ECA246G4697 Erigeron canadensis HOM05D001003 ORTHO05D003884 1.0e-22 110.9 178 47.2
Peaxi162Scf00095g00526 Petunia axillaris HOM05D000007 ORTHO05D000017 2.3e-22 109.8 102 61.8
PGR102G0068 Punica granatum HOM05D001003 ORTHO05D003884 1.1e-21 107.5 166 45.2
SEGI_26781 Sequoiadendron giganteum HOM05D001003 ORTHO05D003884 1.5e-21 107.1 194 42.8
Migut.L01236 Erythranthe guttata HOM05D001003 ORTHO05D003884 5.6e-21 105.1 183 43.7
HanXRQChr17g0545391 Helianthus annuus HOM05D001003 ORTHO05D003884 7.4e-21 104.8 176 44.9
Lsat_1_v5_gn_3_51780 Lactuca sativa HOM05D001003 ORTHO05D003884 3.7e-20 102.4 173 45.7
SEGI_25145 Sequoiadendron giganteum HOM05D001003 ORTHO05D003884 4.0e-19 99.0 193 42.0
Zm00001eb027750 Zea mays HOM05D001003 ORTHO05D003884 2.0e-18 96.7 166 42.2
arahy.Tifrunner.gnm1.ann1.FDL07N Arachis hypogaea HOM05D001003 ORTHO05D003884 2.2e-17 93.2 115 52.2
BcaB05g24387 Brassica carinata HOM05D001003 ORTHO05D027039 1.1e-16 90.9 141 47.5
Os10g0337500 Oryza sativa ssp. japonica HOM05D001003 ORTHO05D003884 1.4e-16 90.5 164 39.6
C04p23070 Brassica napus HOM05D001003 ORTHO05D027039 3.9e-14 82.4 141 47.5
BolC4t23801H Brassica oleracea HOM05D001003 ORTHO05D027039 5.1e-14 82.0 139 46.0
CDE04G2312 Ceratophyllum demersum HOM05D001003 ORTHO05D003884 1.1e-13 80.9 166 40.4
arahy.Tifrunner.gnm1.ann1.DTCT6H Arachis hypogaea HOM05D000140 ORTHO05D017450 1.3e-12 77.4 48 77.1
TAR626G0840 Trochodendron aralioides HOM05D000304 ORTHO05D000185 4.8e-12 75.5 138 39.1
BcaB04g18168 Brassica carinata HOM05D001003 ORTHO05D027039 2.4e-11 73.2 112 46.4
HanXRQChr09g0246031 Helianthus annuus HOM05D001003 ORTHO05D003884 4.5e-10 68.9 60 60.0
HanXRQChr15g0491041 Helianthus annuus HOM05D001003 ORTHO05D003884 4.5e-10 68.9 60 60.0
HanXRQChr03g0072611 Helianthus annuus HOM05D001003 ORTHO05D003884 5.9e-10 68.6 60 60.0
arahy.Tifrunner.gnm1.ann1.CI9DXK Arachis hypogaea HOM05D005978 ORTHO05D007472 1.3e-09 67.4 46 69.6
CAN.G135.77 Capsicum annuum HOM05D000549 ORTHO05D012340 1.3e-09 67.4 52 67.3
SMO364G0241 Selaginella moellendorffii HOM05D001003 ORTHO05D003884 1.3e-09 67.4 198 38.4
Nitab4.5_0000720g0050 Nicotiana tabacum HOM05D000081 ORTHO05D000036 2.9e-09 66.2 66 54.5
CAN.G249.1 Capsicum annuum HOM05D000549 ORTHO05D012340 1.2e-07 60.8 87 47.1


User provided reference genes

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