Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR369G0555 Trochodendron aralioides HOM05D002595 ORTHO05D006841 1.7e-69 265.8 128 100.0
TAR371G0102 Trochodendron aralioides HOM05D002595 ORTHO05D003064 1.3e-16 90.1 101 50.5
TAR636G3575 Trochodendron aralioides HOM05D000160 ORTHO05D006841 8.5e-16 87.4 44 93.2
CSS0021573 Camellia sinensis var. sinensis HOM05D002595 ORTHO05D003064 7.2e-15 84.3 101 42.6
Hma1.2p1_1484F.1_g286370 Hydrangea macrophylla HOM05D002595 ORTHO05D003064 1.6e-14 83.2 101 45.5
Lju41A46G88 Lonicera japonica HOM05D002595 ORTHO05D003064 2.7e-14 82.4 101 44.6
Cc07_g00380 Coffea canephora HOM05D002595 ORTHO05D003064 8.0e-14 80.9 111 41.4
Dinv33386 Davidia involucrata HOM05D002595 ORTHO05D003064 8.0e-14 80.9 101 43.6
Actinidia05945 Actinidia chinensis HOM05D002595 ORTHO05D003064 1.0e-13 80.5 101 41.6
TAR374G1694 Trochodendron aralioides HOM05D002595 ORTHO05D003064 1.8e-13 79.7 100 46.0
Solyc02g093790.3 Solanum lycopersicum HOM05D002595 ORTHO05D003064 3.0e-13 79.0 100 40.0
PGSC0003DMG401020229 Solanum tuberosum HOM05D002595 ORTHO05D003064 3.0e-13 79.0 100 40.0
Nitab4.5_0008949g0020 Nicotiana tabacum HOM05D002595 ORTHO05D003064 6.8e-13 77.8 118 39.0
MBI11_g04233_MAGBIO Magnolia biondii HOM05D002595 ORTHO05D003064 1.2e-12 77.0 117 40.2
Nitab4.5_0001863g0160 Nicotiana tabacum HOM05D002595 ORTHO05D003064 1.2e-12 77.0 117 39.3
Sopen02g038430 Solanum pennellii HOM05D002595 ORTHO05D003064 2.0e-12 76.3 100 39.0
Oeu048590.1 Olea europaea HOM05D002595 ORTHO05D003064 3.4e-12 75.5 111 37.8
PGSC0003DMG400013381 Solanum tuberosum HOM05D002595 ORTHO05D003064 4.4e-12 75.1 117 38.5
TWI36G1450 Tripterygium wilfordii HOM05D002595 ORTHO05D003064 5.7e-12 74.7 101 41.6
CAN.G473.56 Capsicum annuum HOM05D002595 ORTHO05D003064 7.5e-12 74.3 100 37.0
Nn3g16569 Nelumbo nucifera HOM05D002595 ORTHO05D003064 9.8e-12 73.9 125 40.0
Nn4g22448 Nelumbo nucifera HOM05D002595 ORTHO05D003064 9.8e-12 73.9 102 43.1
Solyc03g005100.3 Solanum lycopersicum HOM05D002595 ORTHO05D003064 1.3e-11 73.6 117 37.6
Sopen03g001110 Solanum pennellii HOM05D002595 ORTHO05D003064 1.3e-11 73.6 117 37.6
TAR622G0483 Trochodendron aralioides HOM05D002595 ORTHO05D003064 1.7e-11 73.2 107 41.1
CSS0012604 Camellia sinensis var. sinensis HOM05D002595 ORTHO05D003064 2.8e-11 72.4 102 40.2
CSS0034257 Camellia sinensis var. sinensis HOM05D002595 ORTHO05D003064 2.8e-11 72.4 102 40.2
Oeu058754.2 Olea europaea HOM05D002595 ORTHO05D003064 3.7e-11 72.0 101 38.6
Manes.17G107500 Manihot esculenta HOM05D002595 ORTHO05D003064 4.8e-11 71.6 100 36.0
Peaxi162Scf00420g00243 Petunia axillaris HOM05D002595 ORTHO05D003064 4.8e-11 71.6 117 37.6
PSO782G3866 Papaver somniferum HOM05D002595 ORTHO05D003064 6.3e-11 71.2 100 43.0
SHI03782 Sapria himalayana HOM05D000415 ORTHO05D003064 6.3e-11 71.2 101 37.6
unitig_62.g23369 Utricularia gibba HOM05D000468 ORTHO05D003064 6.3e-11 71.2 110 37.3
ClCG05G013210 Citrullus lanatus HOM05D002595 ORTHO05D003064 8.3e-11 70.9 101 37.6
MELO3C014849.2 Cucumis melo HOM05D002595 ORTHO05D003064 8.3e-11 70.9 101 37.6
Nitab4.5_0000559g0150 Nicotiana tabacum HOM05D002595 ORTHO05D003064 8.3e-11 70.9 125 36.8
PSO063G7243 Papaver somniferum HOM05D002595 ORTHO05D003064 8.3e-11 70.9 100 42.0
MSTRG.24064 Avicennia marina HOM05D002595 ORTHO05D003064 1.4e-10 70.1 116 36.2
unitig_52.g17646 Utricularia gibba HOM05D002595 ORTHO05D003064 1.8e-10 69.7 110 37.3
Migut.K01434 Erythranthe guttata HOM05D002595 ORTHO05D003064 2.4e-10 69.3 101 37.6
Dinv14781 Davidia involucrata HOM05D002595 ORTHO05D003064 3.1e-10 68.9 100 42.0
SalBow7G4601 Salvia bowleyana HOM05D002595 ORTHO05D003064 3.1e-10 68.9 101 36.6
CiPaw.01G144400 Carya illinoinensis HOM05D000160 ORTHO05D006841 4.1e-10 68.6 46 67.4
CsaV3_3G027340 Cucumis sativus L. HOM05D002595 ORTHO05D003064 4.1e-10 68.6 101 36.6
Migut.H00056 Erythranthe guttata HOM05D002595 ORTHO05D003064 4.1e-10 68.6 116 37.1
THA.LOC104821109 Tarenaya hassleriana HOM05D002595 ORTHO05D003064 4.1e-10 68.6 101 36.6
Sed0005830 Sechium edule HOM05D002595 ORTHO05D003064 5.4e-10 68.2 101 37.6
DCAR_011287 Daucus carota HOM05D002595 ORTHO05D003064 9.1e-10 67.4 99 34.3
THA.LOC104823965 Tarenaya hassleriana HOM05D002595 ORTHO05D003064 1.2e-09 67.0 101 36.6
ATR0686G165 Amborella trichopoda HOM05D002595 ORTHO05D003064 1.6e-09 66.6 101 37.6
MSTRG.3113 Avicennia marina HOM05D002595 ORTHO05D003064 1.6e-09 66.6 100 36.0
Hma1.2p1_0279F.1_g112240 Hydrangea macrophylla HOM05D002595 ORTHO05D003064 1.6e-09 66.6 70 48.6
Thecc.04G027300 Theobroma cacao HOM05D002595 ORTHO05D003064 1.6e-09 66.6 102 37.3
CAN.G1965.8 Capsicum annuum HOM05D002595 ORTHO05D003064 2.7e-09 65.9 117 35.9
DCAR_015076 Daucus carota HOM05D002595 ORTHO05D003064 2.7e-09 65.9 101 35.6
ECA232G4165 Erigeron canadensis HOM05D002595 ORTHO05D003064 2.7e-09 65.9 100 36.0
MD09G1017600 Malus domestica HOM05D002595 ORTHO05D003064 2.7e-09 65.9 104 35.6
MD17G1018400 Malus domestica HOM05D002595 ORTHO05D003064 2.7e-09 65.9 104 35.6
Rhsim10G0011400 Rhododendron simsii HOM05D002595 ORTHO05D003064 2.7e-09 65.9 104 39.4
Prupe.3G299300 Prunus persica HOM05D002595 ORTHO05D003064 3.5e-09 65.5 104 35.6
CDE04G0207 Ceratophyllum demersum HOM05D002595 ORTHO05D003064 4.5e-09 65.1 118 34.7
Glyma.19G083100 Glycine max HOM05D002595 ORTHO05D003064 4.5e-09 65.1 105 37.1
Gohir.A11G065200 Gossypium hirsutum HOM05D002595 ORTHO05D003064 4.5e-09 65.1 102 35.3
Gohir.D11G069500 Gossypium hirsutum HOM05D002595 ORTHO05D003064 4.5e-09 65.1 102 35.3
Gorai.007G074300 Gossypium raimondii HOM05D002595 ORTHO05D003064 4.5e-09 65.1 102 35.3
COL.COLO4_29273 Corchorus olitorius HOM05D002595 ORTHO05D003064 5.9e-09 64.7 104 36.5
MSTRG.15550 Avicennia marina HOM05D002595 ORTHO05D003064 7.7e-09 64.3 101 35.6
Duzib147G1347 Durio zibethinus HOM05D002595 ORTHO05D003064 7.7e-09 64.3 102 36.3
Duzib264G0508 Durio zibethinus HOM05D002595 ORTHO05D003064 7.7e-09 64.3 102 36.3
CDE07G2020 Ceratophyllum demersum HOM05D002595 ORTHO05D003064 1.0e-08 63.9 120 36.7
Phvul.008G149400 Phaseolus vulgaris HOM05D002595 ORTHO05D003064 1.0e-08 63.9 116 35.3
arahy.Tifrunner.gnm1.ann1.P4GVCP Arachis hypogaea HOM05D002595 ORTHO05D003064 1.3e-08 63.5 114 35.1
arahy.Tifrunner.gnm1.ann1.Z2IH01 Arachis hypogaea HOM05D002595 ORTHO05D003064 1.3e-08 63.5 114 35.1
Gohir.A09G033200 Gossypium hirsutum HOM05D002595 ORTHO05D003064 1.7e-08 63.2 102 36.3
Gohir.D09G033400 Gossypium hirsutum HOM05D002595 ORTHO05D003064 1.7e-08 63.2 102 36.3
Gorai.006G038400 Gossypium raimondii HOM05D002595 ORTHO05D003064 1.7e-08 63.2 102 36.3
BcaB01g05122 Brassica carinata HOM05D002595 ORTHO05D003064 2.2e-08 62.8 111 34.2
A03p06520 Brassica napus HOM05D002595 ORTHO05D003064 2.2e-08 62.8 111 34.2
C03p07540 Brassica napus HOM05D002595 ORTHO05D003064 2.2e-08 62.8 111 34.2
BolC3t13255H Brassica oleracea HOM05D002595 ORTHO05D003064 2.2e-08 62.8 111 34.2
BraA03t09984Z Brassica rapa HOM05D002595 ORTHO05D003064 2.2e-08 62.8 111 34.2
Ca_06613_v3 Cicer arietinum L. HOM05D002595 ORTHO05D003064 2.2e-08 62.8 111 34.2
FAN02G1781 Fragaria x ananassa HOM05D002595 ORTHO05D003064 2.2e-08 62.8 100 38.0
Lsat_1_v5_gn_4_183821 Lactuca sativa HOM05D002595 ORTHO05D003064 2.2e-08 62.8 100 36.0
Lj1g0011277 Lotus japonicus HOM05D002595 ORTHO05D003064 2.2e-08 62.8 104 33.7
QL06p010887 Quercus lobata HOM05D000160 ORTHO05D006841 2.2e-08 62.8 44 68.2
Sp6g29740 Schrenkiella parvula HOM05D002595 ORTHO05D003064 2.2e-08 62.8 101 34.7
Peaxi162Scf00700g00226 Petunia axillaris HOM05D002595 ORTHO05D003064 2.9e-08 62.4 100 36.0
SGA_v2.0_scaffold154G37151 Striga asiatica HOM05D002595 ORTHO05D003064 2.9e-08 62.4 116 34.5
Sp2g16480 Schrenkiella parvula HOM05D002595 ORTHO05D003064 3.8e-08 62.0 101 33.7
SGA_v2.0_scaffold47G17545 Striga asiatica HOM05D002595 ORTHO05D003064 3.8e-08 62.0 118 33.9
Aa31LG2G5350 Aethionema arabicum HOM05D002595 ORTHO05D003064 5.0e-08 61.6 101 33.7
Aqoxy5G03561 Aquilegia oxysepala HOM05D002595 ORTHO05D003064 5.0e-08 61.6 101 36.6
Carub.0005s0559 Capsella rubella HOM05D002595 ORTHO05D003064 5.0e-08 61.6 101 33.7
FAN05G1312 Fragaria x ananassa HOM05D002595 ORTHO05D003064 5.0e-08 61.6 100 37.0
FAN09G3487 Fragaria x ananassa HOM05D002595 ORTHO05D003064 5.0e-08 61.6 100 37.0
Glyma.16G062800 Glycine max HOM05D002595 ORTHO05D003064 5.0e-08 61.6 105 36.2
Gohir.A07G225600 Gossypium hirsutum HOM05D002595 ORTHO05D003064 5.0e-08 61.6 102 34.3
Gohir.D07G232800 Gossypium hirsutum HOM05D002595 ORTHO05D003064 5.0e-08 61.6 102 34.3
Gorai.001G268100 Gossypium raimondii HOM05D002595 ORTHO05D003064 5.0e-08 61.6 102 34.3
VMungo1383G1165 Vigna mungo HOM05D002595 ORTHO05D003064 5.0e-08 61.6 111 34.2
AL5G16550 Arabidopsis lyrata HOM05D002595 ORTHO05D003064 6.5e-08 61.2 101 33.7
A10p24200 Brassica napus HOM05D002595 ORTHO05D003064 6.5e-08 61.2 100 35.0
BraA10t44483Z Brassica rapa HOM05D002595 ORTHO05D003064 6.5e-08 61.2 100 35.0
CARHR148600 Cardamine hirsuta HOM05D002595 ORTHO05D003064 6.5e-08 61.2 59 44.1
FvH4_6g52540 Fragaria vesca HOM05D002595 ORTHO05D003064 6.5e-08 61.2 100 37.0
FAN14G2773 Fragaria x ananassa HOM05D002595 ORTHO05D003064 6.5e-08 61.2 100 37.0
Psat3g177160 Pisum sativum HOM05D002595 ORTHO05D003064 6.5e-08 61.2 112 35.7
AT3G27320 Arabidopsis thaliana HOM05D002595 ORTHO05D003064 1.1e-07 60.5 101 31.7
BcaB01g06335 Brassica carinata HOM05D002595 ORTHO05D003064 1.1e-07 60.5 104 35.6
HanXRQChr15g0487101 Helianthus annuus HOM05D002595 ORTHO05D003064 1.1e-07 60.5 100 34.0
RcHm_v2.0_Chr2g0174131 Rosa chinensis HOM05D002595 ORTHO05D003064 1.1e-07 60.5 100 36.0
THA.LOC104805346 Tarenaya hassleriana HOM05D002595 ORTHO05D003064 1.1e-07 60.5 102 34.3
AT5G14310 Arabidopsis thaliana HOM05D002595 ORTHO05D003064 1.5e-07 60.1 101 33.7
Gohir.A10G160650 Gossypium hirsutum HOM05D002595 ORTHO05D003064 1.5e-07 60.1 100 36.0
TPR.G14258 Trifolium pratense HOM05D002595 ORTHO05D003064 1.5e-07 60.1 109 34.9
vmacro05921 Vaccinium macrocarpon HOM05D002595 ORTHO05D003064 1.5e-07 60.1 108 37.0
BcaB08g36980 Brassica carinata HOM05D002595 ORTHO05D003064 1.9e-07 59.7 102 34.3
BcaC04g19046 Brassica carinata HOM05D002595 ORTHO05D003064 1.9e-07 59.7 102 34.3
C09p62880 Brassica napus HOM05D002595 ORTHO05D003064 1.9e-07 59.7 102 34.3
BolC9t59125H Brassica oleracea HOM05D002595 ORTHO05D003064 1.9e-07 59.7 102 34.3
Cfa015448 Carpinus fangiana HOM05D000160 ORTHO05D006841 1.9e-07 59.7 46 58.7
Sed0027789 Sechium edule HOM05D002595 ORTHO05D003064 1.9e-07 59.7 102 34.3
Ciclev10015160m.g Citrus clementina HOM05D002595 ORTHO05D003064 2.5e-07 59.3 101 30.7
Eucgr.I01696 Eucalyptus grandis HOM05D002595 ORTHO05D003064 2.5e-07 59.3 101 33.7
Aqoxy3G01426 Aquilegia oxysepala HOM05D002595 ORTHO05D003064 3.2e-07 58.9 101 36.6
Carub.0006s1250 Capsella rubella HOM05D002595 ORTHO05D003064 3.2e-07 58.9 101 33.7
Thhalv10013549m.g Eutrema salsugineum HOM05D002595 ORTHO05D003064 3.2e-07 58.9 101 33.7
Aa31LG11G15100 Aethionema arabicum HOM05D002595 ORTHO05D003064 4.2e-07 58.5 101 33.7
AL6G25010 Arabidopsis lyrata HOM05D002595 ORTHO05D003064 4.2e-07 58.5 101 33.7
Atru.chr6.2484 Acer truncatum HOM05D002595 ORTHO05D003064 5.5e-07 58.2 106 34.9
PGR102G0514 Punica granatum HOM05D002595 ORTHO05D003064 5.5e-07 58.2 103 37.9
SalBow1G1494 Salvia bowleyana HOM05D002595 ORTHO05D003064 5.5e-07 58.2 100 34.0
Ah.04g163490 Amaranthus hybridus HOM05D002595 ORTHO05D003064 7.2e-07 57.8 116 33.6
Gohir.D10G085300 Gossypium hirsutum HOM05D002595 ORTHO05D003064 7.2e-07 57.8 102 33.3
Gorai.011G093200 Gossypium raimondii HOM05D002595 ORTHO05D003064 7.2e-07 57.8 102 33.3
Lj2g0021680 Lotus japonicus HOM05D002595 ORTHO05D003064 7.2e-07 57.8 100 37.0
Duzib187G1481 Durio zibethinus HOM05D002595 ORTHO05D003064 9.4e-07 57.4 102 33.3
HanXRQChr09g0255611 Helianthus annuus HOM05D002595 ORTHO05D003064 9.4e-07 57.4 100 34.0
BcaC03g17454 Brassica carinata HOM05D002595 ORTHO05D003064 1.2e-06 57.0 35 57.1
C02p54040 Brassica napus HOM05D002595 ORTHO05D003064 1.2e-06 57.0 35 57.1
BolC2t11467H Brassica oleracea HOM05D002595 ORTHO05D003064 1.2e-06 57.0 35 57.1
Cfa007282 Carpinus fangiana HOM05D002595 ORTHO05D003064 1.2e-06 57.0 103 36.9
CSS0000027 Camellia sinensis var. sinensis HOM05D002595 ORTHO05D003064 1.6e-06 56.6 35 74.3
Haze_14811 Corylus avellana HOM05D002595 ORTHO05D003064 1.6e-06 56.6 103 36.9
Ah.06g187220 Amaranthus hybridus HOM05D002595 ORTHO05D003064 2.1e-06 56.2 116 32.8
BcaB01g06382 Brassica carinata HOM05D002595 ORTHO05D003064 2.1e-06 56.2 36 61.1
BcaB08g36973 Brassica carinata HOM05D002595 ORTHO05D003064 2.1e-06 56.2 102 33.3
Glyma.19G078200 Glycine max HOM05D002595 ORTHO05D003064 2.1e-06 56.2 100 36.0
HPP92_002700 Vanilla planifolia HOM05D002595 ORTHO05D003064 2.1e-06 56.2 111 33.3
Hma1.2p1_0079F.1_g041550 Hydrangea macrophylla HOM05D002595 ORTHO05D003064 2.7e-06 55.8 97 34.0
Lj3A1064T99 Lonicera japonica HOM05D002595 ORTHO05D003064 2.7e-06 55.8 101 37.6
Manes.15G009100 Manihot esculenta HOM05D000160 ORTHO05D006841 2.7e-06 55.8 44 59.1
Phvul.004G057500 Phaseolus vulgaris HOM05D002595 ORTHO05D003064 2.7e-06 55.8 100 34.0
CARHR199020 Cardamine hirsuta HOM05D002595 ORTHO05D003064 3.6e-06 55.5 101 31.7
Sc16g0003710 Simmondsia chinensis HOM05D002595 ORTHO05D003064 3.6e-06 55.5 107 32.7
Actinidia15136 Actinidia chinensis HOM05D002595 ORTHO05D003064 4.7e-06 55.1 35 71.4
HPP92_003569 Vanilla planifolia HOM05D002595 ORTHO05D003064 4.7e-06 55.1 111 33.3
Cc03_g01350 Coffea canephora HOM05D000160 ORTHO05D006841 6.1e-06 54.7 50 48.0
Dinv29710 Davidia involucrata HOM05D000160 ORTHO05D006841 6.1e-06 54.7 44 61.4
TPR.G22775 Trifolium pratense HOM05D000160 ORTHO05D006841 8.0e-06 54.3 41 63.4
vmacro15207 Vaccinium macrocarpon HOM05D000160 ORTHO05D006841 8.0e-06 54.3 44 59.1


User provided reference genes

Program Settings