Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR369G0503 Trochodendron aralioides HOM05D004332 ORTHO05D005116 1.6e-88 329.3 156 100.0
TAR636G3330 Trochodendron aralioides HOM05D004332 ORTHO05D005116 7.4e-30 134.4 71 87.3
TAR633G2148 Trochodendron aralioides HOM05D004332 ORTHO05D005116 2.8e-29 132.5 71 84.5
CiPaw.13G092600 Carya illinoinensis HOM05D004332 ORTHO05D005116 4.5e-27 125.2 73 76.7
Nn2g11136 Nelumbo nucifera HOM05D004332 ORTHO05D005116 4.5e-27 125.2 73 78.1
Haze_24115 Corylus avellana HOM05D004332 ORTHO05D005116 1.0e-26 124.0 73 79.5
CiPaw.14G067900 Carya illinoinensis HOM05D004332 ORTHO05D005116 1.3e-26 123.6 73 75.3
Manes.02G131400 Manihot esculenta HOM05D004332 ORTHO05D005116 2.9e-26 122.5 75 78.7
Manes.01G172400 Manihot esculenta HOM05D004332 ORTHO05D005116 3.8e-26 122.1 75 77.3
MBI05_g28381_MAGBIO Magnolia biondii HOM05D004332 ORTHO05D005116 5.0e-26 121.7 74 77.0
TWI31G0816 Tripterygium wilfordii HOM05D004332 ORTHO05D005116 5.0e-26 121.7 74 77.0
Duzib150G0187 Durio zibethinus HOM05D004332 ORTHO05D005116 8.5e-26 120.9 72 79.2
MD03G1090100 Malus domestica HOM05D004332 ORTHO05D005116 8.5e-26 120.9 77 72.7
CANSAT54G0234 Cannabis sativa HOM05D004332 ORTHO05D005116 1.1e-25 120.6 73 75.3
Rhsim13G0081500 Rhododendron simsii HOM05D004332 ORTHO05D005116 1.1e-25 120.6 74 77.0
COL.COLO4_18528 Corchorus olitorius HOM05D004332 ORTHO05D005116 1.4e-25 120.2 75 77.3
Gohir.A05G094800 Gossypium hirsutum HOM05D004332 ORTHO05D005116 1.4e-25 120.2 75 76.0
Gohir.D05G095080 Gossypium hirsutum HOM05D004332 ORTHO05D005116 1.4e-25 120.2 75 76.0
Gohir.D05G095200 Gossypium hirsutum HOM05D004332 ORTHO05D005116 1.4e-25 120.2 75 76.0
Rhsim01G0229500 Rhododendron simsii HOM05D004332 ORTHO05D005116 1.4e-25 120.2 74 77.0
GSVIVG01024938001 Vitis vinifera HOM05D004332 ORTHO05D005116 1.4e-25 120.2 75 74.7
Dinv04179 Davidia involucrata HOM05D004332 ORTHO05D005116 1.9e-25 119.8 76 75.0
MD11G1099700 Malus domestica HOM05D004332 ORTHO05D005116 2.5e-25 119.4 79 70.9
Prupe.6G074300 Prunus persica HOM05D004332 ORTHO05D005116 2.5e-25 119.4 78 70.5
Actinidia34413 Actinidia chinensis HOM05D004332 ORTHO05D005116 3.2e-25 119.0 76 75.0
CSS0027892 Camellia sinensis var. sinensis HOM05D004332 ORTHO05D005116 4.2e-25 118.6 78 73.1
Dinv17021 Davidia involucrata HOM05D004332 ORTHO05D005116 4.2e-25 118.6 76 73.7
Dinv42969 Davidia involucrata HOM05D004332 ORTHO05D005116 4.2e-25 118.6 76 73.7
Dinv43130 Davidia involucrata HOM05D004332 ORTHO05D005116 4.2e-25 118.6 76 73.7
Gohir.D03G124100 Gossypium hirsutum HOM05D004332 ORTHO05D005116 4.2e-25 118.6 75 74.7
Actinidia37195 Actinidia chinensis HOM05D004332 ORTHO05D005116 5.5e-25 118.2 73 75.3
CSS0035025 Camellia sinensis var. sinensis HOM05D004332 ORTHO05D005116 5.5e-25 118.2 76 73.7
TWI75G0441 Tripterygium wilfordii HOM05D004332 ORTHO05D005116 7.2e-25 117.9 74 74.3
vmacro14542 Vaccinium macrocarpon HOM05D004332 ORTHO05D005116 9.4e-25 117.5 74 74.3
Gohir.A03G043200 Gossypium hirsutum HOM05D004332 ORTHO05D005116 1.6e-24 116.7 75 74.7
Thecc.09G319900 Theobroma cacao HOM05D004332 ORTHO05D005116 1.6e-24 116.7 75 73.3
ATR0559G209 Amborella trichopoda HOM05D004332 ORTHO05D005116 2.1e-24 116.3 74 78.4
Cc01_g13020 Coffea canephora HOM05D004332 ORTHO05D005116 2.1e-24 116.3 74 71.6
Duzib168G2052 Durio zibethinus HOM05D004332 ORTHO05D005116 2.1e-24 116.3 75 74.7
HanXRQChr08g0237001 Helianthus annuus HOM05D004332 ORTHO05D005116 2.1e-24 116.3 74 71.6
Glyma.11G138900 Glycine max HOM05D004332 ORTHO05D005116 2.7e-24 115.9 73 72.6
Gorai.009G098500 Gossypium raimondii HOM05D004332 ORTHO05D005116 2.7e-24 115.9 75 74.7
QL01p031517 Quercus lobata HOM05D004332 ORTHO05D005116 2.7e-24 115.9 74 71.6
arahy.Tifrunner.gnm1.ann1.KAW7XL Arachis hypogaea HOM05D004332 ORTHO05D005116 3.6e-24 115.5 73 71.2
arahy.Tifrunner.gnm1.ann1.WMUR0J Arachis hypogaea HOM05D004332 ORTHO05D005116 3.6e-24 115.5 73 71.2
Glyma.12G062500 Glycine max HOM05D004332 ORTHO05D005116 3.6e-24 115.5 73 71.2
SEGI_12680 Sequoiadendron giganteum HOM05D004332 ORTHO05D005116 4.7e-24 115.2 67 76.1
Gorai.003G130800 Gossypium raimondii HOM05D004332 ORTHO05D005116 6.1e-24 114.8 76 73.7
Lsat_1_v5_gn_9_23661 Lactuca sativa HOM05D004332 ORTHO05D005116 7.9e-24 114.4 74 71.6
Ciclev10029562m.g Citrus clementina HOM05D004332 ORTHO05D005116 1.0e-23 114.0 79 68.4
SEGI_11468 Sequoiadendron giganteum HOM05D004332 ORTHO05D005116 1.4e-23 113.6 67 74.6
Sed0019241 Sechium edule HOM05D004332 ORTHO05D005116 3.0e-23 112.5 73 64.4
AT2G29020 Arabidopsis thaliana HOM05D004332 ORTHO05D005116 3.9e-23 112.1 79 68.4
CDE04G0625 Ceratophyllum demersum HOM05D004332 ORTHO05D005116 3.9e-23 112.1 72 65.3
Eucgr.J02045 Eucalyptus grandis HOM05D004332 ORTHO05D005116 3.9e-23 112.1 78 69.2
Hund04945 Selenicereus undatus HOM05D004332 ORTHO05D005116 3.9e-23 112.1 71 67.6
vmacro03061 Vaccinium macrocarpon HOM05D004332 ORTHO05D005116 3.9e-23 112.1 72 73.6
CDE07G0755 Ceratophyllum demersum HOM05D004332 ORTHO05D005116 5.1e-23 111.7 72 66.7
AUR62009559 Chenopodium quinoa HOM05D004332 ORTHO05D005116 5.1e-23 111.7 71 64.8
Gohir.A07G099000 Gossypium hirsutum HOM05D004332 ORTHO05D005116 5.1e-23 111.7 74 73.0
Hma1.2p1_0615F.1_g189860 Hydrangea macrophylla HOM05D004332 ORTHO05D005116 6.7e-23 111.3 73 75.3
Sc12g0001450 Simmondsia chinensis HOM05D004332 ORTHO05D005116 6.7e-23 111.3 71 69.0
SGA_v2.0_scaffold132G34538 Striga asiatica HOM05D004332 ORTHO05D005116 6.7e-23 111.3 76 67.1
Potri.001G241500 Populus trichocarpa HOM05D004332 ORTHO05D005116 8.8e-23 110.9 78 70.5
THA.LOC104814879 Tarenaya hassleriana HOM05D004332 ORTHO05D005116 1.1e-22 110.5 74 68.9
arahy.Tifrunner.gnm1.ann1.TT4C38 Arachis hypogaea HOM05D004332 ORTHO05D005116 1.5e-22 110.2 73 67.1
ClCG03G001410 Citrullus lanatus HOM05D004332 ORTHO05D005116 1.5e-22 110.2 73 65.8
Phvul.011G063600 Phaseolus vulgaris HOM05D004332 ORTHO05D005116 1.5e-22 110.2 71 67.6
Migut.N00901 Erythranthe guttata HOM05D004332 ORTHO05D005116 2.0e-22 109.8 76 67.1
Gohir.D07G103500 Gossypium hirsutum HOM05D004332 ORTHO05D005116 2.0e-22 109.8 73 71.2
Gorai.001G111400 Gossypium raimondii HOM05D004332 ORTHO05D005116 2.0e-22 109.8 73 71.2
Lj3g0024178 Lotus japonicus HOM05D004332 ORTHO05D005116 2.0e-22 109.8 71 66.2
Lalb_Chr19g0137881 Lupinus albus HOM05D004332 ORTHO05D005116 2.0e-22 109.8 73 68.5
CsaV3_1G034360 Cucumis sativus L. HOM05D004332 ORTHO05D005116 2.6e-22 109.4 72 65.3
Thhalv10017410m.g Eutrema salsugineum HOM05D004332 ORTHO05D005116 3.3e-22 109.0 78 66.7
Oeu017398.1 Olea europaea HOM05D004332 ORTHO05D005116 3.3e-22 109.0 77 66.2
Sabra09G0022800 Salix brachista HOM05D004332 ORTHO05D005116 3.3e-22 109.0 76 68.4
Aa31LG5G7210 Aethionema arabicum HOM05D004332 ORTHO05D005116 4.4e-22 108.6 78 65.4
arahy.Tifrunner.gnm1.ann1.A22IES Arachis hypogaea HOM05D004332 ORTHO05D005116 4.4e-22 108.6 73 65.8
EL10Ac7g16034 Beta vulgaris HOM05D004332 ORTHO05D005116 4.4e-22 108.6 71 67.6
Carub.0008s2008 Capsella rubella HOM05D004332 ORTHO05D005116 4.4e-22 108.6 77 66.2
Lalb_Chr03g0026581 Lupinus albus HOM05D004332 ORTHO05D005116 4.4e-22 108.6 73 65.8
unitig_6.g29275 Utricularia gibba HOM05D004332 ORTHO05D005116 4.4e-22 108.6 75 65.3
unitig_747.g21434 Utricularia gibba HOM05D004332 ORTHO05D005116 4.4e-22 108.6 75 65.3
Ah.08g219640 Amaranthus hybridus HOM05D004332 ORTHO05D005116 5.7e-22 108.2 71 63.4
A04p21990 Brassica napus HOM05D004332 ORTHO05D005116 5.7e-22 108.2 78 66.7
BraA04t17767Z Brassica rapa HOM05D004332 ORTHO05D005116 5.7e-22 108.2 78 66.7
PSO339G1935 Papaver somniferum HOM05D004332 ORTHO05D005116 5.7e-22 108.2 67 74.6
Potri.009G032100 Populus trichocarpa HOM05D004332 ORTHO05D005116 5.7e-22 108.2 76 68.4
SalBow2G0012 Salvia bowleyana HOM05D004332 ORTHO05D005116 5.7e-22 108.2 79 62.0
AL146U10030 Arabidopsis lyrata HOM05D004332 ORTHO05D005116 7.4e-22 107.8 78 65.4
AUR62001771 Chenopodium quinoa HOM05D004332 ORTHO05D005116 7.4e-22 107.8 71 62.0
PSO151G0214 Papaver somniferum HOM05D004332 ORTHO05D005116 7.4e-22 107.8 67 74.6
THA.LOC104800671 Tarenaya hassleriana HOM05D004332 ORTHO05D005116 7.4e-22 107.8 77 64.9
BcaB02g10224 Brassica carinata HOM05D004332 ORTHO05D005116 9.7e-22 107.5 79 65.8
TPR.G34281 Trifolium pratense HOM05D004332 ORTHO05D005116 1.3e-21 107.1 73 67.1
AL4G23580 Arabidopsis lyrata HOM05D004332 ORTHO05D005116 1.7e-21 106.7 77 66.2
ECA247G3838 Erigeron canadensis HOM05D004332 ORTHO05D005116 1.7e-21 106.7 72 66.7
FvH4_3g36490 Fragaria vesca HOM05D004332 ORTHO05D005116 1.7e-21 106.7 75 65.3
FAN11G3576 Fragaria x ananassa HOM05D004332 ORTHO05D005116 1.7e-21 106.7 75 65.3
Sp6g21090 Schrenkiella parvula HOM05D004332 ORTHO05D005116 1.7e-21 106.7 73 67.1
DCAR_018915 Daucus carota HOM05D004332 ORTHO05D005116 2.2e-21 106.3 70 62.9
FAN16G1081 Fragaria x ananassa HOM05D004332 ORTHO05D005116 2.2e-21 106.3 75 68.0
FAN21G1178 Fragaria x ananassa HOM05D004332 ORTHO05D005116 2.2e-21 106.3 97 53.6
Oeu064111.2 Olea europaea HOM05D004332 ORTHO05D005116 2.2e-21 106.3 74 64.9
Sed0025770 Sechium edule HOM05D004332 ORTHO05D005116 2.2e-21 106.3 73 61.6
AL8G35880 Arabidopsis lyrata HOM05D004332 ORTHO05D005116 2.8e-21 105.9 75 65.3
BcaC02g08120 Brassica carinata HOM05D004332 ORTHO05D005116 2.8e-21 105.9 78 64.1
C04p58150 Brassica napus HOM05D004332 ORTHO05D005116 2.8e-21 105.9 78 64.1
BolC4t27343H Brassica oleracea HOM05D004332 ORTHO05D005116 2.8e-21 105.9 78 64.1
CARHR122250 Cardamine hirsuta HOM05D004332 ORTHO05D005116 2.8e-21 105.9 78 62.8
Lsat_1_v5_gn_8_73521 Lactuca sativa HOM05D004332 ORTHO05D005116 2.8e-21 105.9 71 66.2
BcaB06g28270 Brassica carinata HOM05D004332 ORTHO05D005116 3.7e-21 105.5 78 64.1
FAN25G2250 Fragaria x ananassa HOM05D004332 ORTHO05D005116 3.7e-21 105.5 75 64.0
VMungo1127G1024 Vigna mungo HOM05D004332 ORTHO05D005116 3.7e-21 105.5 72 66.7
MELO3C020622.2 Cucumis melo HOM05D004332 ORTHO05D005116 4.8e-21 105.1 73 61.6
MELO3C025906.2 Cucumis melo HOM05D004332 ORTHO05D005116 4.8e-21 105.1 75 64.0
Thhalv10015001m.g Eutrema salsugineum HOM05D004332 ORTHO05D005116 4.8e-21 105.1 77 66.2
Medtr2g097270 Medicago truncatula HOM05D004332 ORTHO05D005116 4.8e-21 105.1 73 68.5
Sp4g11830 Schrenkiella parvula HOM05D004332 ORTHO05D005116 4.8e-21 105.1 78 64.1
CsaV3_6G016760 Cucumis sativus L. HOM05D004332 ORTHO05D005116 6.3e-21 104.8 75 64.0
RcHm_v2.0_Chr5g0065351 Rosa chinensis HOM05D004332 ORTHO05D005116 6.3e-21 104.8 73 64.4
THA.LOC104810775 Tarenaya hassleriana HOM05D004332 ORTHO05D005116 6.3e-21 104.8 74 67.6
Aqoxy1G00923 Aquilegia oxysepala HOM05D004332 ORTHO05D005116 8.2e-21 104.4 57 78.9
BcaC02g11036 Brassica carinata HOM05D004332 ORTHO05D005116 8.2e-21 104.4 79 64.6
C04p21940 Brassica napus HOM05D004332 ORTHO05D005116 8.2e-21 104.4 79 64.6
BolC4t23714H Brassica oleracea HOM05D004332 ORTHO05D005116 8.2e-21 104.4 79 64.6
HanXRQChr07g0197291 Helianthus annuus HOM05D004332 ORTHO05D005116 8.2e-21 104.4 92 57.6
Oeu002423.1 Olea europaea HOM05D004332 ORTHO05D005116 8.2e-21 104.4 76 64.5
Aa31sc23G410 Aethionema arabicum HOM05D004332 ORTHO05D005116 1.1e-20 104.0 77 63.6
AT5G59410 Arabidopsis thaliana HOM05D004332 ORTHO05D005116 1.1e-20 104.0 76 64.5
PGR102G2585 Punica granatum HOM05D004332 ORTHO05D005116 1.1e-20 104.0 74 70.3
Atru.chr3.3947 Acer truncatum HOM05D004332 ORTHO05D005116 1.4e-20 103.6 62 77.4
Psat5g286720 Pisum sativum HOM05D004332 ORTHO05D005116 1.4e-20 103.6 71 66.2
A07p19440 Brassica napus HOM05D004332 ORTHO05D005116 1.8e-20 103.2 79 63.3
BraA07t29650Z Brassica rapa HOM05D004332 ORTHO05D005116 1.8e-20 103.2 79 63.3
CARHR285780 Cardamine hirsuta HOM05D004332 ORTHO05D005116 2.4e-20 102.8 77 61.0
THA.LOC104826319 Tarenaya hassleriana HOM05D004332 ORTHO05D005116 4.1e-20 102.1 78 64.1
Sabra16G0146000 Salix brachista HOM05D004332 ORTHO05D005116 7.0e-20 101.3 87 63.2
Carub.0004s1001 Capsella rubella HOM05D004332 ORTHO05D005116 9.1e-20 100.9 78 61.5
Sc21g0005870 Simmondsia chinensis HOM05D004332 ORTHO05D005116 1.5e-19 100.1 72 66.7
Sed0013921 Sechium edule HOM05D004332 ORTHO05D005116 2.6e-19 99.4 75 60.0
ClCG02G020050 Citrullus lanatus HOM05D004332 ORTHO05D005116 3.5e-19 99.0 74 60.8
Nitab4.5_0000463g0140 Nicotiana tabacum HOM05D004332 ORTHO05D005116 2.9e-18 95.9 75 58.7
Nitab4.5_0001326g0120 Nicotiana tabacum HOM05D004332 ORTHO05D005116 3.8e-18 95.5 75 58.7
PGSC0003DMG400030417 Solanum tuberosum HOM05D004332 ORTHO05D005116 5.0e-18 95.1 70 58.6
Solyc06g076260.3 Solanum lycopersicum HOM05D004332 ORTHO05D005116 1.1e-17 94.0 70 57.1
CAN.G394.64 Capsicum annuum HOM05D004332 ORTHO05D005116 1.4e-17 93.6 60 65.0
Os05g0110600 Oryza sativa ssp. japonica HOM05D004332 ORTHO05D005116 4.7e-16 88.6 61 62.3
Pp3c16_16760 Physcomitrium patens HOM05D004332 ORTHO05D005116 6.1e-16 88.2 68 55.9
Mapoly0045s0062 Marchantia polymorpha HOM05D004332 ORTHO05D005116 8.8e-15 84.3 66 53.0
SMO304G0081 Selaginella moellendorffii HOM05D004332 ORTHO05D005116 2.0e-14 83.2 75 46.7
Zm00001eb266910 Zea mays HOM05D004332 ORTHO05D005116 2.2e-13 79.7 76 50.0
HPP92_028206 Vanilla planifolia HOM05D004332 ORTHO05D005116 4.8e-13 78.6 58 63.8
Pp3c6_17300 Physcomitrium patens HOM05D004332 ORTHO05D005116 6.3e-13 78.2 68 48.5
Nn2g13368 Nelumbo nucifera HOM05D004332 ORTHO05D005116 3.1e-12 75.9 36 88.9
AagrBONN_evm.TU.Sc2ySwM_228.3328 Anthoceros agrestis HOM05D004332 ORTHO05D005116 4.1e-12 75.5 69 49.3
Eucgr.H02119 Eucalyptus grandis HOM05D004332 ORTHO05D005116 1.0e-07 60.8 52 57.7


User provided reference genes

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