Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR369G0454 Trochodendron aralioides HOM05D004300 ORTHO05D005171 2.2e-177 625.5 319 100.0
TAR623G1572 Trochodendron aralioides HOM05D004300 ORTHO05D005171 1.5e-133 479.9 322 80.4
GSVIVG01025511001 Vitis vinifera HOM05D004300 ORTHO05D005171 2.7e-119 432.6 319 72.1
MBI19_g24076_MAGBIO Magnolia biondii HOM05D004300 ORTHO05D005171 1.5e-109 400.2 320 65.3
QL01p007808 Quercus lobata HOM05D004300 ORTHO05D005171 1.6e-108 396.7 319 67.1
Dinv31991 Davidia involucrata HOM05D004300 ORTHO05D005171 1.4e-107 393.7 297 69.0
Actinidia16226 Actinidia chinensis HOM05D004300 ORTHO05D005171 5.3e-107 391.7 319 64.3
TWI34G2030 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 7.6e-106 387.9 322 64.0
PSO339G2659 Papaver somniferum HOM05D004300 ORTHO05D005171 1.3e-105 387.1 321 63.2
Nn7g35788 Nelumbo nucifera HOM05D004300 ORTHO05D005171 1.7e-105 386.7 320 64.7
Potri.001G000900 Populus trichocarpa HOM05D004300 ORTHO05D005171 1.4e-104 383.6 322 64.9
Gohir.D08G020600 Gossypium hirsutum HOM05D004300 ORTHO05D005171 3.2e-104 382.5 319 63.3
PSO384G2337 Papaver somniferum HOM05D004300 ORTHO05D005171 3.2e-104 382.5 321 62.6
FAN21G2148 Fragaria x ananassa HOM05D004300 ORTHO05D005171 9.3e-104 380.9 329 62.0
FAN25G0045 Fragaria x ananassa HOM05D004300 ORTHO05D005171 9.3e-104 380.9 320 63.1
Gorai.004G019900 Gossypium raimondii HOM05D004300 ORTHO05D005171 9.3e-104 380.9 319 63.3
Gohir.A08G014000 Gossypium hirsutum HOM05D004300 ORTHO05D005171 1.2e-103 380.6 312 63.5
TWI32G0643 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 1.6e-103 380.2 322 63.7
MD11G1000600 Malus domestica HOM05D004300 ORTHO05D005171 2.7e-103 379.4 316 62.7
Lj1A554T14 Lonicera japonica HOM05D004300 ORTHO05D005171 7.9e-103 377.9 281 67.3
Manes.03G085800 Manihot esculenta HOM05D004300 ORTHO05D005171 3.0e-102 375.9 319 63.6
Ca_30870_v3 Cicer arietinum L. HOM05D004300 ORTHO05D005171 6.7e-102 374.8 316 62.7
Manes.15G111100 Manihot esculenta HOM05D004300 ORTHO05D005171 8.7e-102 374.4 327 63.3
Nn2g15910 Nelumbo nucifera HOM05D004300 ORTHO05D005171 2.5e-101 372.9 290 69.3
Thecc.09G206000 Theobroma cacao HOM05D004300 ORTHO05D005171 2.5e-101 372.9 323 64.4
Glyma.12G020500 Glycine max HOM05D004300 ORTHO05D005171 2.1e-100 369.8 315 60.3
Duzib168G1574 Durio zibethinus HOM05D004300 ORTHO05D005171 2.8e-100 369.4 322 61.2
Rhsim09G0130300 Rhododendron simsii HOM05D004300 ORTHO05D005171 2.8e-100 369.4 321 62.3
CiPaw.13G179700 Carya illinoinensis HOM05D004300 ORTHO05D005171 1.1e-99 367.5 286 66.8
Haze_22917 Corylus avellana HOM05D004300 ORTHO05D005171 1.2e-98 364.0 293 66.2
Cpa.g.sc119.11 Carica papaya HOM05D004300 ORTHO05D005171 2.0e-98 363.2 305 64.9
Cfa009526 Carpinus fangiana HOM05D004300 ORTHO05D005171 2.0e-98 363.2 293 65.9
Medtr1g055160 Medicago truncatula HOM05D004300 ORTHO05D005171 2.6e-98 362.8 316 61.1
Cc03_g11060 Coffea canephora HOM05D004300 ORTHO05D005171 4.5e-98 362.1 320 62.5
FvH4_3g45990 Fragaria vesca HOM05D004300 ORTHO05D005171 1.7e-97 360.1 320 60.3
ECA234G4359 Erigeron canadensis HOM05D004300 ORTHO05D005171 2.2e-97 359.8 319 58.6
FAN11G3171 Fragaria x ananassa HOM05D004300 ORTHO05D005171 8.4e-97 357.8 320 60.0
Ciclev10015980m.g Citrus clementina HOM05D004300 ORTHO05D005171 1.1e-96 357.5 316 60.8
ATR0068G043 Amborella trichopoda HOM05D004300 ORTHO05D005171 1.9e-96 356.7 313 60.7
Psat7g172560 Pisum sativum HOM05D004300 ORTHO05D005171 1.9e-96 356.7 314 60.5
Nitab4.5_0000075g0150 Nicotiana tabacum HOM05D004300 ORTHO05D005171 3.2e-96 355.9 320 59.4
Medtr4g076880 Medicago truncatula HOM05D004300 ORTHO05D005171 4.2e-96 355.5 320 59.7
TWI36G1534 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 4.2e-96 355.5 322 60.2
FAN16G3749 Fragaria x ananassa HOM05D004300 ORTHO05D005171 7.1e-96 354.8 329 58.4
HanXRQChr03g0088211 Helianthus annuus HOM05D004300 ORTHO05D005171 7.1e-96 354.8 320 59.1
Phvul.011G023200 Phaseolus vulgaris HOM05D004300 ORTHO05D005171 7.1e-96 354.8 319 58.9
VMungo1127G0835 Vigna mungo HOM05D004300 ORTHO05D005171 1.2e-95 354.0 319 57.7
DCAR_019963 Daucus carota HOM05D004300 ORTHO05D005171 4.6e-95 352.1 314 58.6
Migut.D02580 Erythranthe guttata HOM05D004300 ORTHO05D005171 7.9e-95 351.3 321 58.6
SalBow2G2450 Salvia bowleyana HOM05D004300 ORTHO05D005171 1.8e-94 350.1 319 59.2
Eucgr.J01724 Eucalyptus grandis HOM05D004300 ORTHO05D005171 2.3e-94 349.7 326 60.4
CSS0042366 Camellia sinensis var. sinensis HOM05D004300 ORTHO05D005171 3.9e-94 349.0 271 67.2
Glyma.11G094000 Glycine max HOM05D004300 ORTHO05D005171 3.9e-94 349.0 319 57.4
Sopen01g018940 Solanum pennellii HOM05D004300 ORTHO05D005171 5.7e-93 345.1 318 56.9
Peaxi162Scf00186g01713 Petunia axillaris HOM05D004300 ORTHO05D005171 9.6e-93 344.4 301 60.8
EL10Ac2g04496 Beta vulgaris HOM05D004300 ORTHO05D005171 1.3e-92 344.0 314 58.6
Prupe.6G000900 Prunus persica HOM05D004300 ORTHO05D005171 1.6e-92 343.6 325 59.4
Solyc01g049890.3 Solanum lycopersicum HOM05D004300 ORTHO05D005171 2.1e-92 343.2 318 56.9
MSTRG.20930 Avicennia marina HOM05D004300 ORTHO05D005171 8.2e-92 341.3 322 57.1
AT3G13410 Arabidopsis thaliana HOM05D004300 ORTHO05D005171 9.0e-91 337.8 315 56.8
CARHR088020 Cardamine hirsuta HOM05D004300 ORTHO05D005171 1.2e-90 337.4 317 54.9
AL1G63580 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 1.5e-90 337.0 313 56.2
arahy.Tifrunner.gnm1.ann1.S4YUBI Arachis hypogaea HOM05D004300 ORTHO05D005171 1.5e-90 337.0 323 56.0
BcaC05g29181 Brassica carinata HOM05D004300 ORTHO05D005171 4.5e-90 335.5 320 55.3
C05p54490 Brassica napus HOM05D004300 ORTHO05D005171 4.5e-90 335.5 320 55.3
BolC5t34116H Brassica oleracea HOM05D004300 ORTHO05D005171 4.5e-90 335.5 320 55.3
Sed0000768 Sechium edule HOM05D004300 ORTHO05D005171 1.3e-89 334.0 317 56.5
RcHm_v2.0_Chr5g0084101 Rosa chinensis HOM05D004300 ORTHO05D005171 1.7e-89 333.6 322 56.5
Sp1g41170 Schrenkiella parvula HOM05D004300 ORTHO05D005171 1.7e-89 333.6 315 56.2
Aa31LG10G690 Aethionema arabicum HOM05D004300 ORTHO05D005171 2.9e-89 332.8 317 55.2
CARHR045240 Cardamine hirsuta HOM05D004300 ORTHO05D005171 2.9e-89 332.8 317 55.8
Ah.10g037910 Amaranthus hybridus HOM05D004300 ORTHO05D005171 3.8e-89 332.4 315 56.5
Thhalv10021153m.g Eutrema salsugineum HOM05D004300 ORTHO05D005171 3.8e-89 332.4 317 55.5
CAN.G40.2 Capsicum annuum HOM05D004300 ORTHO05D005171 5.0e-89 332.0 320 56.6
COL.COLO4_35065 Corchorus olitorius HOM05D004300 ORTHO05D005171 6.5e-89 331.6 284 63.4
Lj3g0008656 Lotus japonicus HOM05D004300 ORTHO05D005171 8.4e-89 331.3 316 56.3
AL3G25280 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 1.4e-88 330.5 315 55.6
Sc14g0004840 Simmondsia chinensis HOM05D004300 ORTHO05D005171 1.4e-88 330.5 319 56.4
Sp3g11600 Schrenkiella parvula HOM05D004300 ORTHO05D005171 3.2e-88 329.3 320 53.4
Sabra01G0000800 Salix brachista HOM05D004300 ORTHO05D005171 4.2e-88 328.9 370 54.3
THA.LOC104822689 Tarenaya hassleriana HOM05D004300 ORTHO05D005171 4.2e-88 328.9 316 57.0
AUR62023250 Chenopodium quinoa HOM05D004300 ORTHO05D005171 1.6e-87 327.0 317 56.8
Aa31LG8G620 Aethionema arabicum HOM05D004300 ORTHO05D005171 4.6e-87 325.5 317 53.6
A05p36120 Brassica napus HOM05D004300 ORTHO05D005171 4.6e-87 325.5 320 53.8
BraA05t22418Z Brassica rapa HOM05D004300 ORTHO05D005171 4.6e-87 325.5 320 53.8
BraA01t04057Z Brassica rapa HOM05D004300 ORTHO05D005171 2.3e-86 323.2 321 53.9
CANSAT54G1622 Cannabis sativa HOM05D004300 ORTHO05D005171 3.9e-86 322.4 317 54.9
BcaC09g48307 Brassica carinata HOM05D004300 ORTHO05D005171 5.1e-86 322.0 321 53.6
A03p38190 Brassica napus HOM05D004300 ORTHO05D005171 5.1e-86 322.0 321 53.3
C01p51680 Brassica napus HOM05D004300 ORTHO05D005171 5.1e-86 322.0 321 53.6
BolC1t05112H Brassica oleracea HOM05D004300 ORTHO05D005171 5.1e-86 322.0 321 53.6
BraA03t12972Z Brassica rapa HOM05D004300 ORTHO05D005171 5.1e-86 322.0 321 53.3
A01p40190 Brassica napus HOM05D004300 ORTHO05D005171 6.7e-86 321.6 321 53.3
BcaC01g03994 Brassica carinata HOM05D004300 ORTHO05D005171 1.5e-85 320.5 321 53.3
BolC3t16904H Brassica oleracea HOM05D004300 ORTHO05D005171 1.5e-85 320.5 321 53.3
Sabra02G0167600 Salix brachista HOM05D004300 ORTHO05D005171 1.9e-85 320.1 342 57.6
BcaB04g18758 Brassica carinata HOM05D004300 ORTHO05D005171 2.5e-85 319.7 321 53.3
SGA_v2.0_scaffold6G03345 Striga asiatica HOM05D004300 ORTHO05D005171 2.5e-85 319.7 321 54.5
MSTRG.18890 Avicennia marina HOM05D004300 ORTHO05D005171 3.3e-85 319.3 321 54.2
C03p46350 Brassica napus HOM05D004300 ORTHO05D005171 4.3e-85 318.9 321 53.6
CDE11G0372 Ceratophyllum demersum HOM05D004300 ORTHO05D005171 4.3e-85 318.9 318 54.7
MELO3C019973.2 Cucumis melo HOM05D004300 ORTHO05D005171 2.2e-84 316.6 321 54.5
Lalb_Chr01g0001071 Lupinus albus HOM05D004300 ORTHO05D005171 4.8e-84 315.5 322 53.1
SGA_v2.0_scaffold3G01707 Striga asiatica HOM05D004300 ORTHO05D005171 6.3e-84 315.1 321 54.2
Carub.0003s1278 Capsella rubella HOM05D004300 ORTHO05D005171 8.2e-84 314.7 316 53.8
Sed0018013 Sechium edule HOM05D004300 ORTHO05D005171 8.2e-84 314.7 323 55.1
Carub.0001s4406 Capsella rubella HOM05D004300 ORTHO05D005171 1.4e-83 313.9 314 54.1
THA.LOC104816065 Tarenaya hassleriana HOM05D004300 ORTHO05D005171 1.8e-83 313.5 316 54.1
CANSAT35G0440 Cannabis sativa HOM05D004300 ORTHO05D005171 3.1e-83 312.8 322 52.5
Lalb_Chr19g0139761 Lupinus albus HOM05D004300 ORTHO05D005171 4.1e-83 312.4 317 53.3
BcaB04g21013 Brassica carinata HOM05D004300 ORTHO05D005171 5.3e-83 312.0 314 52.9
ClCG10G005160 Citrullus lanatus HOM05D004300 ORTHO05D005171 1.5e-82 310.5 321 54.2
CsaV3_6G004960 Cucumis sativus L. HOM05D004300 ORTHO05D005171 2.6e-82 309.7 321 54.5
ClCG08G007290 Citrullus lanatus HOM05D004300 ORTHO05D005171 4.5e-82 308.9 322 54.0
Ca_18976_v3 Cicer arietinum L. HOM05D004300 ORTHO05D005171 1.0e-81 307.8 285 58.2
CDE02G0988 Ceratophyllum demersum HOM05D004300 ORTHO05D005171 1.3e-81 307.4 318 53.5
arahy.Tifrunner.gnm1.ann1.C8XIPM Arachis hypogaea HOM05D004300 ORTHO05D005171 3.8e-81 305.8 323 51.7
Atru.chr3.2054 Acer truncatum HOM05D004300 ORTHO05D005171 6.5e-81 305.1 285 58.6
Lsat_1_v5_gn_4_42220 Lactuca sativa HOM05D004300 ORTHO05D005171 6.5e-81 305.1 318 52.2
PGR119G1781 Punica granatum HOM05D004300 ORTHO05D005171 1.1e-80 304.3 318 52.5
vmacro04045 Vaccinium macrocarpon HOM05D004300 ORTHO05D005171 3.2e-80 302.8 418 44.3
PGSC0003DMG400021083 Solanum tuberosum HOM05D004300 ORTHO05D005171 4.2e-80 302.4 258 59.7
Ah.16g101370 Amaranthus hybridus HOM05D003924 ORTHO05D005216 1.6e-79 300.4 315 51.4
Hund16197 Selenicereus undatus HOM05D004300 ORTHO05D005171 3.6e-79 299.3 259 57.1
PGSC0003DMG400031504 Solanum tuberosum HOM05D004300 ORTHO05D005171 3.6e-79 299.3 258 59.3
Potri.003G223601 Populus trichocarpa HOM05D004300 ORTHO05D005171 4.6e-79 298.9 262 62.6
HPP92_021175 Vanilla planifolia HOM05D004300 ORTHO05D005171 1.4e-78 297.4 322 51.6
Sabra03G0048200 Salix brachista HOM05D004300 ORTHO05D005171 1.1e-75 287.7 402 47.8
Zm00001eb093640 Zea mays HOM05D004300 ORTHO05D005171 3.1e-75 286.2 322 49.1
Zm00001eb195780 Zea mays HOM05D004300 ORTHO05D005171 3.4e-74 282.7 327 50.2
Os12g0123900 Oryza sativa ssp. japonica HOM05D004300 ORTHO05D005171 2.9e-73 279.6 321 49.2
Os11g0127700 Oryza sativa ssp. japonica HOM05D004300 ORTHO05D005171 1.6e-71 273.9 321 48.0
unitig_22.g5956 Utricularia gibba HOM05D004300 ORTHO05D005171 3.0e-70 269.6 327 49.2
TPR.G3681 Trifolium pratense HOM05D004300 ORTHO05D005171 5.7e-61 238.8 320 45.9
Duzib150G1501 Durio zibethinus HOM05D004300 ORTHO05D005171 4.1e-59 232.6 331 43.5
MD03G1001400 Malus domestica HOM05D004300 ORTHO05D005171 2.1e-55 220.3 225 52.4
SEGI_28087 Sequoiadendron giganteum HOM05D004300 ORTHO05D005171 2.2e-49 200.3 245 42.0
Thhalv10011977m.g Eutrema salsugineum HOM05D004300 ORTHO05D005171 5.5e-48 195.7 213 52.1
Nitab4.5_0000890g0150 Nicotiana tabacum HOM05D004300 ORTHO05D005171 2.8e-44 183.3 164 58.5
RcHm_v2.0_Chr4g0398051 Rosa chinensis HOM05D004300 ORTHO05D005171 1.1e-43 181.4 156 59.0
RcHm_v2.0_Chr7g0192441 Rosa chinensis HOM05D004300 ORTHO05D005171 1.3e-41 174.5 162 58.0
Mapoly0001s0434 Marchantia polymorpha HOM05D004300 ORTHO05D005171 1.4e-35 154.5 321 34.0
AUR62023204 Chenopodium quinoa HOM05D004300 ORTHO05D005171 3.0e-33 146.7 193 47.2
Pp3c14_9560 Physcomitrium patens HOM05D004300 ORTHO05D005171 1.9e-32 144.1 319 29.2
Pp3c1_26860 Physcomitrium patens HOM05D004300 ORTHO05D005171 3.3e-32 143.3 321 28.3
AL1G23250 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 6.8e-30 135.6 136 52.2
AL5G32130 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 2.0e-29 134.0 136 51.5
Potri.008G223987 Populus trichocarpa HOM05D004300 ORTHO05D005171 2.9e-28 130.2 114 57.9
Potri.012G124888 Populus trichocarpa HOM05D004300 ORTHO05D005171 4.3e-24 116.3 87 65.5
SMO134G0100 Selaginella moellendorffii HOM05D004300 ORTHO05D005171 2.8e-23 113.6 330 30.0
AT1G55546 Arabidopsis thaliana HOM05D004300 ORTHO05D005171 3.4e-21 106.7 108 55.6
FAN02G4318 Fragaria x ananassa HOM05D004300 ORTHO05D005171 4.1e-19 99.8 90 58.9
FAN17G1476 Fragaria x ananassa HOM05D004300 ORTHO05D005171 4.1e-19 99.8 90 58.9
FAN20G0894 Fragaria x ananassa HOM05D004300 ORTHO05D005171 4.6e-18 96.3 99 53.5
Zm00001eb363780 Zea mays HOM05D004300 ORTHO05D005171 6.0e-18 95.9 79 54.4
Zm00001eb043250 Zea mays HOM05D004300 ORTHO05D005171 7.8e-18 95.5 74 58.1
Zm00001eb387380 Zea mays HOM05D004300 ORTHO05D005171 7.8e-18 95.5 87 54.0
Actinidia00920 Actinidia chinensis HOM05D004300 ORTHO05D038087 1.3e-17 94.7 138 45.7
Zm00001eb080660 Zea mays HOM05D004300 ORTHO05D005171 5.6e-16 89.4 93 48.4
RcHm_v2.0_Chr7g0231521 Rosa chinensis HOM05D005603 ORTHO05D006944 2.8e-15 87.0 79 53.2
Zm00001eb132370 Zea mays HOM05D004300 ORTHO05D005171 5.8e-13 79.3 100 41.0
Medtr1g055145 Medicago truncatula HOM05D004300 ORTHO05D005171 6.0e-10 69.3 78 46.2


User provided reference genes

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