Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR369G0407 Trochodendron aralioides HOM05D005747 ORTHO05D007159 3.5e-55 218.0 107 100.0
TAR633G0139 Trochodendron aralioides HOM05D005747 ORTHO05D007159 4.6e-47 191.0 107 86.9
arahy.Tifrunner.gnm1.ann1.548B55 Arachis hypogaea HOM05D005747 ORTHO05D007159 3.3e-45 184.9 105 85.7
arahy.Tifrunner.gnm1.ann1.GC88CS Arachis hypogaea HOM05D005747 ORTHO05D007159 4.3e-45 184.5 105 84.8
arahy.Tifrunner.gnm1.ann1.47U1LD Arachis hypogaea HOM05D005747 ORTHO05D007159 7.3e-45 183.7 105 84.8
arahy.Tifrunner.gnm1.ann1.W5J3RK Arachis hypogaea HOM05D005747 ORTHO05D007159 1.2e-44 183.0 105 84.8
PGR004G0006 Punica granatum HOM05D005747 ORTHO05D007159 2.1e-44 182.2 105 81.0
Duzib093G2107 Durio zibethinus HOM05D005747 ORTHO05D007159 4.7e-44 181.0 105 82.9
Haze_20552 Corylus avellana HOM05D005747 ORTHO05D007159 6.2e-44 180.6 105 84.8
PSO063G6473 Papaver somniferum HOM05D005747 ORTHO05D007159 6.2e-44 180.6 107 78.5
PSO339G2391 Papaver somniferum HOM05D005747 ORTHO05D007159 6.2e-44 180.6 107 78.5
QL07p043606 Quercus lobata HOM05D005747 ORTHO05D007159 6.2e-44 180.6 105 82.9
Eucgr.A01688 Eucalyptus grandis HOM05D005747 ORTHO05D007159 8.1e-44 180.3 105 81.0
Thecc.05G065200 Theobroma cacao HOM05D005747 ORTHO05D007159 1.4e-43 179.5 105 81.9
Manes.08G009800 Manihot esculenta HOM05D005747 ORTHO05D007159 2.4e-43 178.7 105 80.0
Duzib128G1360 Durio zibethinus HOM05D005747 ORTHO05D007159 3.1e-43 178.3 105 81.0
Gohir.A09G147500 Gossypium hirsutum HOM05D005747 ORTHO05D007159 5.2e-43 177.6 105 81.0
Cfa020071 Carpinus fangiana HOM05D005747 ORTHO05D007159 1.2e-42 176.4 105 81.0
THA.LOC104826911 Tarenaya hassleriana HOM05D005747 ORTHO05D007159 1.2e-42 176.4 105 79.0
GSVIVG01025728001 Vitis vinifera HOM05D005747 ORTHO05D007159 2.0e-42 175.6 105 78.1
Atru.chr8.1820 Acer truncatum HOM05D005747 ORTHO05D007159 2.6e-42 175.3 105 79.0
Gohir.D09G143100 Gossypium hirsutum HOM05D005747 ORTHO05D007159 2.6e-42 175.3 105 80.0
Gorai.006G164600 Gossypium raimondii HOM05D005747 ORTHO05D007159 2.6e-42 175.3 105 80.0
Glyma.10G057000 Glycine max HOM05D005747 ORTHO05D007159 3.4e-42 174.9 105 78.1
Hma1.2p1_0205F.1_g087080 Hydrangea macrophylla HOM05D005747 ORTHO05D007159 3.4e-42 174.9 104 79.8
Lj5g0010104 Lotus japonicus HOM05D005747 ORTHO05D007159 3.4e-42 174.9 104 79.8
TWI74G1168 Tripterygium wilfordii HOM05D005747 ORTHO05D007159 3.4e-42 174.9 105 81.0
Haze_20124 Corylus avellana HOM05D005747 ORTHO05D007159 4.4e-42 174.5 105 81.0
Nn7g38309 Nelumbo nucifera HOM05D005747 ORTHO05D007159 7.6e-42 173.7 105 82.9
Actinidia28901 Actinidia chinensis HOM05D005747 ORTHO05D007159 9.9e-42 173.3 105 78.1
Actinidia08777 Actinidia chinensis HOM05D005747 ORTHO05D007159 1.3e-41 172.9 105 78.1
vmacro07288 Vaccinium macrocarpon HOM05D005747 ORTHO05D007159 1.3e-41 172.9 105 80.0
Aqoxy1G01163 Aquilegia oxysepala HOM05D005747 ORTHO05D007159 1.7e-41 172.6 107 74.8
Glyma.13G143500 Glycine max HOM05D005747 ORTHO05D007159 1.7e-41 172.6 105 77.1
Prupe.6G232700 Prunus persica HOM05D005747 ORTHO05D007159 2.2e-41 172.2 105 76.2
TWI77G0618 Tripterygium wilfordii HOM05D005747 ORTHO05D007159 2.2e-41 172.2 105 81.9
Ciclev10013173m.g Citrus clementina HOM05D005747 ORTHO05D007159 8.4e-41 170.2 105 76.2
RcHm_v2.0_Chr3g0470141 Rosa chinensis HOM05D005747 ORTHO05D007159 8.4e-41 170.2 107 76.6
Psat0s2933g0080 Pisum sativum HOM05D005747 ORTHO05D007159 1.1e-40 169.9 105 75.2
MD04G1094200 Malus domestica HOM05D005747 ORTHO05D007159 1.4e-40 169.5 105 75.2
Phvul.001G178800 Phaseolus vulgaris HOM05D005747 ORTHO05D007159 1.4e-40 169.5 105 75.2
Migut.L01698 Erythranthe guttata HOM05D005747 ORTHO05D007159 1.9e-40 169.1 105 75.2
Lalb_Chr20g0112621 Lupinus albus HOM05D005747 ORTHO05D007159 1.9e-40 169.1 105 74.3
CSS0033757 Camellia sinensis var. sinensis HOM05D005747 ORTHO05D007159 3.2e-40 168.3 105 75.2
FAN05G2010 Fragaria x ananassa HOM05D005747 ORTHO05D007159 3.2e-40 168.3 107 75.7
Psat6g073040 Pisum sativum HOM05D005747 ORTHO05D007159 3.2e-40 168.3 105 77.1
EL10Ac1g00026 Beta vulgaris HOM05D005747 ORTHO05D007159 4.1e-40 167.9 105 75.2
Peaxi162Scf00701g00029 Petunia axillaris HOM05D005747 ORTHO05D007159 4.1e-40 167.9 105 74.3
FvH4_6g16280 Fragaria vesca HOM05D005747 ORTHO05D007159 5.4e-40 167.5 107 74.8
FAN14G5754 Fragaria x ananassa HOM05D005747 ORTHO05D007159 5.4e-40 167.5 107 74.8
Medtr7g101880 Medicago truncatula HOM05D005747 ORTHO05D007159 5.4e-40 167.5 99 78.8
Rhsim03G0092400 Rhododendron simsii HOM05D005747 ORTHO05D007159 5.4e-40 167.5 105 78.1
FAN02G1695 Fragaria x ananassa HOM05D005747 ORTHO05D007159 7.1e-40 167.2 107 73.8
Solyc09g008140.3 Solanum lycopersicum HOM05D005747 ORTHO05D007159 7.1e-40 167.2 105 72.4
Sopen09g002940 Solanum pennellii HOM05D005747 ORTHO05D007159 7.1e-40 167.2 105 72.4
Dinv37311 Davidia involucrata HOM05D005747 ORTHO05D007159 1.2e-39 166.4 105 78.1
CARHR210000 Cardamine hirsuta HOM05D005747 ORTHO05D007159 1.6e-39 166.0 103 74.8
Thhalv10015093m.g Eutrema salsugineum HOM05D005747 ORTHO05D007159 2.1e-39 165.6 103 75.7
MD12G1113800 Malus domestica HOM05D005747 ORTHO05D007159 2.1e-39 165.6 105 73.3
Manes.09G066900 Manihot esculenta HOM05D005747 ORTHO05D007159 2.1e-39 165.6 104 76.9
Glyma.19G183500 Glycine max HOM05D005747 ORTHO05D007159 2.7e-39 165.2 105 73.3
FAN09G1333 Fragaria x ananassa HOM05D005747 ORTHO05D007159 4.6e-39 164.5 107 73.8
Potri.006G125300 Populus trichocarpa HOM05D005747 ORTHO05D007159 4.6e-39 164.5 107 74.8
AL6G12680 Arabidopsis lyrata HOM05D005747 ORTHO05D007159 6.0e-39 164.1 103 72.8
CANSAT80G0760 Cannabis sativa HOM05D005747 ORTHO05D007159 6.0e-39 164.1 105 75.2
CAN.G900.40 Capsicum annuum HOM05D005747 ORTHO05D007159 7.8e-39 163.7 105 71.4
CSS0022084 Camellia sinensis var. sinensis HOM05D005747 ORTHO05D007159 1.0e-38 163.3 105 74.3
CSS0033637 Camellia sinensis var. sinensis HOM05D005747 ORTHO05D007159 1.3e-38 162.9 105 74.3
MELO3C009353.2 Cucumis melo HOM05D005747 ORTHO05D007159 1.3e-38 162.9 105 71.4
TPR.G9369 Trifolium pratense HOM05D005747 ORTHO05D007159 1.3e-38 162.9 105 75.2
Carub.0006s0216 Capsella rubella HOM05D005747 ORTHO05D007159 1.7e-38 162.5 103 71.8
MSTRG.19175 Avicennia marina HOM05D005747 ORTHO05D007159 2.3e-38 162.2 104 72.1
ClCG10G020160 Citrullus lanatus HOM05D005747 ORTHO05D007159 2.3e-38 162.2 105 70.5
CsaV3_3G035950 Cucumis sativus L. HOM05D005747 ORTHO05D007159 2.3e-38 162.2 105 71.4
Lalb_Chr02g0155891 Lupinus albus HOM05D005747 ORTHO05D007159 2.3e-38 162.2 104 72.1
Phvul.007G149300 Phaseolus vulgaris HOM05D005747 ORTHO05D007159 5.1e-38 161.0 104 74.0
AT5G03345 Arabidopsis thaliana HOM05D005747 ORTHO05D007159 6.6e-38 160.6 103 70.9
C02p00970 Brassica napus HOM05D001005 ORTHO05D000836 1.5e-37 159.5 103 72.8
VMungo1383G0680 Vigna mungo HOM05D005747 ORTHO05D007159 1.5e-37 159.5 105 71.4
Aa31LG3G2310 Aethionema arabicum HOM05D005747 ORTHO05D007159 4.3e-37 157.9 105 67.6
BcaC03g13014 Brassica carinata HOM05D005747 ORTHO05D007159 4.3e-37 157.9 103 71.8
Ca_11494_v3 Cicer arietinum L. HOM05D005747 ORTHO05D007159 4.3e-37 157.9 105 72.4
TPR.G25697 Trifolium pratense HOM05D005747 ORTHO05D007159 4.3e-37 157.9 99 76.8
Medtr1g063370 Medicago truncatula HOM05D005747 ORTHO05D007159 5.6e-37 157.5 105 72.4
SGA_v2.0_scaffold75G24844 Striga asiatica HOM05D005747 ORTHO05D007159 7.3e-37 157.1 97 76.3
Ah.05g172440 Amaranthus hybridus HOM05D005747 ORTHO05D007159 9.6e-37 156.8 105 72.4
Sp6g39390 Schrenkiella parvula HOM05D005747 ORTHO05D007159 1.6e-36 156.0 103 70.9
Sed0019850 Sechium edule HOM05D005747 ORTHO05D007159 1.6e-36 156.0 105 69.5
Cc06_g04180 Coffea canephora HOM05D005747 ORTHO05D007159 3.6e-36 154.8 105 70.5
SalBow5G0179 Salvia bowleyana HOM05D005747 ORTHO05D007159 4.7e-36 154.5 105 67.6
SalBow5G1412 Salvia bowleyana HOM05D005747 ORTHO05D007159 4.7e-36 154.5 105 67.6
Potri.016G091900 Populus trichocarpa HOM05D005747 ORTHO05D007159 8.1e-36 153.7 107 71.0
Zm00001eb028740 Zea mays HOM05D005747 ORTHO05D007159 8.1e-36 153.7 105 68.6
Os12g0566400 Oryza sativa ssp. japonica HOM05D005747 ORTHO05D007159 4.0e-35 151.4 105 67.6
Sc02g0001670 Simmondsia chinensis HOM05D005747 ORTHO05D007159 6.9e-35 150.6 105 68.6
unitig_578.g16384 Utricularia gibba HOM05D005747 ORTHO05D007159 9.0e-35 150.2 97 69.1
PGSC0003DMG400003860 Solanum tuberosum HOM05D005747 ORTHO05D007159 1.2e-34 149.8 133 57.1
Zm00001eb136890 Zea mays HOM05D005747 ORTHO05D007159 1.2e-34 149.8 104 67.3
Gorai.006G061900 Gossypium raimondii HOM05D005747 ORTHO05D007159 3.4e-34 148.3 107 72.0
Lsat_1_v5_gn_6_25181 Lactuca sativa HOM05D005747 ORTHO05D007159 2.9e-33 145.2 100 68.0
ECA233G4120 Erigeron canadensis HOM05D005747 ORTHO05D007159 3.8e-33 144.8 100 67.0
HPP92_009808 Vanilla planifolia HOM05D005747 ORTHO05D007159 3.2e-32 141.7 92 71.7
HanXRQChr13g0401071 Helianthus annuus HOM05D005747 ORTHO05D007159 4.2e-32 141.4 105 61.9
Nitab4.5_0000578g0140 Nicotiana tabacum HOM05D005747 ORTHO05D007159 5.4e-32 141.0 105 64.8
Nitab4.5_0002632g0020 Nicotiana tabacum HOM05D005747 ORTHO05D007159 9.3e-32 140.2 105 63.8
CDE06G0870 Ceratophyllum demersum HOM05D005747 ORTHO05D007159 1.6e-31 139.4 94 69.1
Glyma.03G182900 Glycine max HOM05D005747 ORTHO05D007159 2.1e-31 139.0 134 55.2
HanXRQChr02g0051611 Helianthus annuus HOM05D005747 ORTHO05D007159 9.6e-29 130.2 104 58.7
Hma1.2p1_0205F.1_g087090 Hydrangea macrophylla HOM05D005747 ORTHO05D007159 8.1e-28 127.1 98 65.3
SMO137G0056 Selaginella moellendorffii HOM05D005747 ORTHO05D007159 1.4e-27 126.3 92 65.2
Hund20347 Selenicereus undatus HOM05D005747 ORTHO05D007159 1.8e-27 125.9 77 77.9
Mapoly0011s0153 Marchantia polymorpha HOM05D005747 ORTHO05D007159 3.1e-27 125.2 103 57.3
Lj2A1109T71 Lonicera japonica HOM05D005747 ORTHO05D007159 7.6e-26 120.6 91 64.8
SEGI_15519 Sequoiadendron giganteum HOM05D005747 ORTHO05D007159 7.6e-26 120.6 93 60.2
Pp3c5_16080 Physcomitrium patens HOM05D005747 ORTHO05D007159 2.2e-25 119.0 97 57.7
Oeu053677.1 Olea europaea HOM05D005747 ORTHO05D007159 4.9e-25 117.9 78 71.8
Pp3c6_8930 Physcomitrium patens HOM05D005747 ORTHO05D007159 1.1e-24 116.7 95 55.8
CSS0043170 Camellia sinensis var. sinensis HOM05D005747 ORTHO05D007159 4.2e-24 114.8 70 80.0
CSS0041044 Camellia sinensis var. sinensis HOM05D005747 ORTHO05D007159 3.5e-23 111.7 70 78.6
AagrBONN_evm.TU.Sc2ySwM_362.1648 Anthoceros agrestis HOM05D005747 ORTHO05D007159 6.0e-23 110.9 83 59.0
CiPaw.09G219400 Carya illinoinensis HOM05D005747 ORTHO05D007159 7.9e-23 110.5 97 62.9
Sabra16G0097500 Salix brachista HOM05D005747 ORTHO05D007159 6.7e-22 107.5 78 67.9
DCAR_020822 Daucus carota HOM05D005747 ORTHO05D007159 8.7e-22 107.1 76 65.8
Oeu045224.1 Olea europaea HOM05D005747 ORTHO05D007159 5.6e-21 104.4 86 60.5
Sed0003931 Sechium edule HOM05D005747 ORTHO05D007159 2.1e-20 102.4 66 66.7
AUR62023620 Chenopodium quinoa HOM05D005747 ORTHO05D007159 2.8e-20 102.1 113 51.3
AUR62004704 Chenopodium quinoa HOM05D005747 ORTHO05D007159 1.8e-19 99.4 105 51.4
ATR0104G002 Amborella trichopoda HOM05D005747 ORTHO05D007159 9.0e-19 97.1 79 59.5
Lalb_Chr02g0156001 Lupinus albus HOM05D005747 ORTHO05D007159 1.0e-14 83.6 82 58.5
Dinv35784 Davidia involucrata HOM05D005747 ORTHO05D007159 1.3e-14 83.2 50 82.0
COL.COLO4_26972 Corchorus olitorius HOM05D005747 ORTHO05D007159 1.9e-13 79.3 46 76.1
Lalb_Chr25g0289001 Lupinus albus HOM05D005747 ORTHO05D007159 2.4e-11 72.4 52 69.2
MCO03G507 Micromonas commoda HOM05D005747 ORTHO05D007159 4.0e-11 71.6 86 39.5
Os11g0568633 Oryza sativa ssp. japonica HOM05D005747 ORTHO05D007159 4.9e-09 64.7 42 66.7
unitig_8.g4716 Utricularia gibba HOM05D000027 ORTHO05D002055 3.0e-06 55.5 100 36.0


User provided reference genes

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