Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR369G0401 Trochodendron aralioides HOM05D003642 ORTHO05D004460 2.8e-120 435.3 214 100.0
TAR623G1689 Trochodendron aralioides HOM05D003642 ORTHO05D004460 4.1e-71 271.9 201 70.1
Nn2g14115 Nelumbo nucifera HOM05D003642 ORTHO05D004460 2.2e-64 249.6 213 58.7
Prupe.6G127500 Prunus persica HOM05D003642 ORTHO05D004460 2.7e-51 206.1 186 56.5
MD03G1142400 Malus domestica HOM05D003642 ORTHO05D004460 1.2e-49 200.7 198 54.0
Dinv29465 Davidia involucrata HOM05D003642 ORTHO05D004460 1.1e-47 194.1 176 59.1
Cpa.g.sc32.97 Carica papaya HOM05D003642 ORTHO05D004460 1.7e-45 186.8 176 55.1
TWI31G0358 Tripterygium wilfordii HOM05D003642 ORTHO05D004460 1.7e-45 186.8 210 50.0
FvH4_3g24660 Fragaria vesca HOM05D003642 ORTHO05D004460 3.8e-45 185.7 184 52.2
FAN11G1888 Fragaria x ananassa HOM05D003642 ORTHO05D004460 8.6e-45 184.5 184 51.6
FAN21G1092 Fragaria x ananassa HOM05D003642 ORTHO05D004460 8.6e-45 184.5 184 51.6
RcHm_v2.0_Chr5g0044221 Rosa chinensis HOM05D003642 ORTHO05D004460 8.6e-45 184.5 182 53.3
MD11G1162900 Malus domestica HOM05D003642 ORTHO05D004460 1.5e-44 183.7 198 51.5
CiPaw.13G137400 Carya illinoinensis HOM05D003642 ORTHO05D004460 2.5e-44 183.0 181 55.2
FAN16G3636 Fragaria x ananassa HOM05D003642 ORTHO05D004460 3.3e-44 182.6 186 51.6
FAN25G1659 Fragaria x ananassa HOM05D003642 ORTHO05D004460 4.3e-44 182.2 184 51.1
COL.COLO4_19910 Corchorus olitorius HOM05D003642 ORTHO05D004460 7.3e-44 181.4 184 53.3
Potri.004G184200 Populus trichocarpa HOM05D003642 ORTHO05D004460 7.3e-44 181.4 162 56.8
GSVIVG01036150001 Vitis vinifera HOM05D003642 ORTHO05D004460 7.3e-44 181.4 161 60.2
Manes.11G160800 Manihot esculenta HOM05D003642 ORTHO05D004460 1.2e-43 180.6 162 58.0
Duzib170G0814 Durio zibethinus HOM05D003642 ORTHO05D004460 3.6e-43 179.1 180 52.2
Sc12g0004420 Simmondsia chinensis HOM05D003642 ORTHO05D004460 3.6e-43 179.1 201 48.3
Aqoxy2G01228 Aquilegia oxysepala HOM05D003642 ORTHO05D004460 4.7e-43 178.7 202 51.5
Hma1.2p1_0305F.1_g119710 Hydrangea macrophylla HOM05D003642 ORTHO05D004460 8.0e-43 177.9 213 53.1
Manes.04G004900 Manihot esculenta HOM05D003642 ORTHO05D004460 1.4e-42 177.2 165 54.5
MBI17_g01557_MAGBIO Magnolia biondii HOM05D003642 ORTHO05D004460 2.3e-42 176.4 198 50.0
Thecc.09G285800 Theobroma cacao HOM05D003642 ORTHO05D004460 2.3e-42 176.4 184 51.6
Sabra04G0123900 Salix brachista HOM05D003642 ORTHO05D004460 1.2e-41 174.1 162 54.9
Hma1.2p1_0305F.1_g119720 Hydrangea macrophylla HOM05D003642 ORTHO05D004460 1.3e-40 170.6 164 59.1
Hma1.2p1_0578F.1_g182375 Hydrangea macrophylla HOM05D003642 ORTHO05D004460 1.3e-40 170.6 164 59.1
Gohir.D07G113300 Gossypium hirsutum HOM05D003642 ORTHO05D004460 3.7e-40 169.1 168 52.4
Gorai.001G121600 Gossypium raimondii HOM05D003642 ORTHO05D004460 6.4e-40 168.3 168 52.4
Cfa010037 Carpinus fangiana HOM05D003642 ORTHO05D004460 1.4e-39 167.2 183 49.7
CSS0018533 Camellia sinensis var. sinensis HOM05D003642 ORTHO05D004460 4.1e-39 165.6 159 56.0
CANSAT54G0701 Cannabis sativa HOM05D003642 ORTHO05D004460 9.2e-39 164.5 189 48.7
Actinidia24206 Actinidia chinensis HOM05D003642 ORTHO05D004460 2.7e-38 162.9 176 48.9
Actinidia07238 Actinidia chinensis HOM05D003642 ORTHO05D004460 2.3e-37 159.8 176 49.4
TAR369G0447 Trochodendron aralioides HOM05D003642 ORTHO05D004460 5.0e-37 158.7 158 60.1
Haze_23398 Corylus avellana HOM05D003642 ORTHO05D004460 8.6e-37 157.9 167 51.5
Glyma.11G184200 Glycine max HOM05D003642 ORTHO05D004460 1.9e-36 156.8 177 48.6
AUR62039222 Chenopodium quinoa HOM05D003642 ORTHO05D004460 3.3e-36 156.0 171 47.4
Ciclev10028611m.g Citrus clementina HOM05D003642 ORTHO05D004460 3.3e-36 156.0 166 51.2
Ah.08g215830 Amaranthus hybridus HOM05D003642 ORTHO05D004460 2.8e-35 152.9 173 44.5
Lj2C980T3 Lonicera japonica HOM05D003642 ORTHO05D004460 8.0e-35 151.4 160 51.9
Lj3g0020685 Lotus japonicus HOM05D003642 ORTHO05D004460 1.0e-34 151.0 187 46.0
EL10Ac7g15808 Beta vulgaris HOM05D003642 ORTHO05D004460 3.1e-34 149.4 166 46.4
Gorai.009G086400 Gossypium raimondii HOM05D003642 ORTHO05D004460 8.9e-34 147.9 183 44.8
Phvul.011G093000 Phaseolus vulgaris HOM05D003642 ORTHO05D004460 8.9e-34 147.9 177 46.9
Glyma.12G088200 Glycine max HOM05D003642 ORTHO05D004460 1.2e-33 147.5 179 45.3
Gohir.A05G081500 Gossypium hirsutum HOM05D003642 ORTHO05D004460 1.2e-33 147.5 183 44.3
Potri.009G144000 Populus trichocarpa HOM05D003642 ORTHO05D004460 2.0e-33 146.7 162 51.9
QL01p012516 Quercus lobata HOM05D003642 ORTHO05D004460 2.0e-33 146.7 161 50.9
VMungo1127G0822 Vigna mungo HOM05D003642 ORTHO05D004460 2.0e-33 146.7 176 46.6
Ca_19399_v3 Cicer arietinum L. HOM05D003642 ORTHO05D004460 3.4e-33 146.0 197 42.6
Gohir.D05G084500 Gossypium hirsutum HOM05D003642 ORTHO05D004460 3.4e-33 146.0 183 44.3
Atru.chr3.3290 Acer truncatum HOM05D003642 ORTHO05D004460 4.4e-33 145.6 162 50.0
Eucgr.B03872 Eucalyptus grandis HOM05D003642 ORTHO05D004460 4.4e-33 145.6 179 43.0
Psat7g189000 Pisum sativum HOM05D003642 ORTHO05D004460 5.8e-33 145.2 160 46.2
ATR0820G225 Amborella trichopoda HOM05D003642 ORTHO05D004460 9.8e-33 144.4 157 47.8
MBI01_g03598_MAGBIO Magnolia biondii HOM05D003642 ORTHO05D004460 1.3e-32 144.1 153 52.3
Sabra09G0111700 Salix brachista HOM05D003642 ORTHO05D004460 3.7e-32 142.5 162 50.0
vmacro03309 Vaccinium macrocarpon HOM05D003642 ORTHO05D004460 3.7e-32 142.5 155 49.0
MSTRG.18752 Avicennia marina HOM05D003642 ORTHO05D004460 4.9e-32 142.1 159 50.3
Sed0019020 Sechium edule HOM05D003642 ORTHO05D004460 4.9e-32 142.1 161 48.4
Oeu002383.1 Olea europaea HOM05D003642 ORTHO05D004460 1.4e-31 140.6 159 47.2
Migut.D02354 Erythranthe guttata HOM05D003642 ORTHO05D004460 1.9e-31 140.2 159 48.4
PGR102G1012 Punica granatum HOM05D003642 ORTHO05D004460 1.9e-31 140.2 160 49.4
Sabra09G0114400 Salix brachista HOM05D003642 ORTHO05D004460 1.9e-31 140.2 162 49.4
ClCG02G022190 Citrullus lanatus HOM05D003642 ORTHO05D004460 3.2e-31 139.4 160 45.6
Lalb_Chr03g0028031 Lupinus albus HOM05D003642 ORTHO05D004460 4.1e-31 139.0 161 44.1
Rhsim13G0110400 Rhododendron simsii HOM05D003642 ORTHO05D004460 9.2e-31 137.9 173 47.4
CiPaw.14G101500 Carya illinoinensis HOM05D003642 ORTHO05D004460 2.0e-30 136.7 165 47.9
CSS0027733 Camellia sinensis var. sinensis HOM05D003642 ORTHO05D004460 3.5e-30 136.0 160 45.0
CSS0037628 Camellia sinensis var. sinensis HOM05D003642 ORTHO05D004460 3.5e-30 136.0 160 45.0
vmacro03308 Vaccinium macrocarpon HOM05D003642 ORTHO05D004460 7.8e-30 134.8 150 46.7
Rhsim13G0110200 Rhododendron simsii HOM05D003642 ORTHO05D004460 3.0e-29 132.9 158 45.6
Medtr4g053520 Medicago truncatula HOM05D003642 ORTHO05D004460 3.9e-29 132.5 159 44.0
PGSC0003DMG400007143 Solanum tuberosum HOM05D003642 ORTHO05D004460 8.6e-29 131.3 160 43.8
MELO3C021417.2 Cucumis melo HOM05D003642 ORTHO05D004460 1.9e-28 130.2 160 43.1
Duzib150G1635 Durio zibethinus HOM05D003642 ORTHO05D004460 4.3e-28 129.0 104 55.8
Sopen06g030830 Solanum pennellii HOM05D003642 ORTHO05D004460 5.6e-28 128.6 160 42.5
PSO384G4986 Papaver somniferum HOM05D003642 ORTHO05D004460 7.3e-28 128.3 159 44.0
vmacro03307 Vaccinium macrocarpon HOM05D003642 ORTHO05D004460 9.5e-28 127.9 161 43.5
CsaV3_6G015050 Cucumis sativus L. HOM05D003642 ORTHO05D004460 1.2e-27 127.5 160 42.5
Solyc06g074370.3 Solanum lycopersicum HOM05D003642 ORTHO05D004460 1.2e-27 127.5 160 41.9
Lj1A233T8 Lonicera japonica HOM05D003642 ORTHO05D004460 4.7e-27 125.6 159 45.9
Lj1A242T18 Lonicera japonica HOM05D003642 ORTHO05D004460 4.7e-27 125.6 159 45.9
Cc01_g09370 Coffea canephora HOM05D003642 ORTHO05D004460 6.2e-27 125.2 164 48.2
Gorai.004G009500 Gossypium raimondii HOM05D003642 ORTHO05D004460 1.4e-26 124.0 164 41.5
Nitab4.5_0002002g0040 Nicotiana tabacum HOM05D003642 ORTHO05D004460 2.3e-26 123.2 146 44.5
Nitab4.5_0005324g0040 Nicotiana tabacum HOM05D003642 ORTHO05D004460 2.3e-26 123.2 146 44.5
Gohir.A08G004800 Gossypium hirsutum HOM05D003642 ORTHO05D004460 4.0e-26 122.5 164 40.9
SGA_v2.0_scaffold22G09875 Striga asiatica HOM05D003642 ORTHO05D004460 4.0e-26 122.5 159 44.7
AUR62009777 Chenopodium quinoa HOM05D003642 ORTHO05D004460 8.9e-26 121.3 145 44.1
HanXRQChr01g0024131 Helianthus annuus HOM05D003642 ORTHO05D004460 3.4e-25 119.4 155 43.9
THA.LOC104800538 Tarenaya hassleriana HOM05D003642 ORTHO05D004460 3.4e-25 119.4 169 42.0
Peaxi162Scf00091g00013 Petunia axillaris HOM05D003642 ORTHO05D004460 1.7e-24 117.1 157 42.7
CAN.G919.22 Capsicum annuum HOM05D003642 ORTHO05D004460 8.3e-24 114.8 161 41.0
CDE02G0744 Ceratophyllum demersum HOM05D003642 ORTHO05D004460 1.1e-23 114.4 159 41.5
CDE06G1048 Ceratophyllum demersum HOM05D003642 ORTHO05D004460 7.1e-23 111.7 130 43.1
Atru.chr3.3293 Acer truncatum HOM05D003642 ORTHO05D004460 9.2e-23 111.3 136 49.3
DCAR_012184 Daucus carota HOM05D003642 ORTHO05D004460 2.1e-22 110.2 155 40.6
CDE08G0849 Ceratophyllum demersum HOM05D003642 ORTHO05D004460 6.0e-22 108.6 131 42.7
CARHR008130 Cardamine hirsuta HOM05D003642 ORTHO05D004460 7.8e-22 108.2 181 37.6
Sp1g06910 Schrenkiella parvula HOM05D003642 ORTHO05D004460 2.3e-21 106.7 160 41.9
AT1G08280 Arabidopsis thaliana HOM05D003642 ORTHO05D004460 3.0e-21 106.3 167 40.7
Thhalv10007826m.g Eutrema salsugineum HOM05D003642 ORTHO05D004460 5.1e-21 105.5 160 40.6
SGA_v2.0_scaffold147G36369 Striga asiatica HOM05D003642 ORTHO05D004460 6.6e-21 105.1 174 40.2
Lsat_1_v5_gn_1_61681 Lactuca sativa HOM05D003642 ORTHO05D004460 4.3e-20 102.4 154 38.3
unitig_0.g1479 Utricularia gibba HOM05D003642 ORTHO05D004460 4.3e-20 102.4 160 39.4
AL1G18680 Arabidopsis lyrata HOM05D003642 ORTHO05D004460 5.6e-20 102.1 163 39.9
Oeu053747.5 Olea europaea HOM05D003460 ORTHO05D004277 1.6e-19 100.5 126 46.0
Eucgr.B03871 Eucalyptus grandis HOM05D003642 ORTHO05D004460 4.7e-19 99.0 164 37.8
PSO210G3660 Papaver somniferum HOM05D003642 ORTHO05D004460 1.8e-18 97.1 163 38.0
Lsat_1_v5_gn_6_40461 Lactuca sativa HOM05D003642 ORTHO05D004460 4.0e-18 95.9 151 37.7
THA.LOC104826418 Tarenaya hassleriana HOM05D003642 ORTHO05D004460 2.6e-17 93.2 163 38.0
ECA248G0168 Erigeron canadensis HOM05D003642 ORTHO05D002466 3.4e-17 92.8 122 41.0
HPP92_025134 Vanilla planifolia HOM05D003642 ORTHO05D004460 5.8e-17 92.0 154 39.6
HPP92_026090 Vanilla planifolia HOM05D003642 ORTHO05D004460 5.8e-17 92.0 154 39.6
HanXRQChr11g0346801 Helianthus annuus HOM05D003642 ORTHO05D004460 3.8e-16 89.4 152 36.2
BraA06t23738Z Brassica rapa HOM05D003642 ORTHO05D004460 5.4e-15 85.5 177 36.2
Gorai.004G170400 Gossypium raimondii HOM05D003642 ORTHO05D047870 9.2e-15 84.7 157 39.5
TPR.G17216 Trifolium pratense HOM05D003642 ORTHO05D004460 1.2e-14 84.3 194 31.4
A06p05300 Brassica napus HOM05D003642 ORTHO05D004460 2.7e-14 83.2 174 39.7
TWI75G1212 Tripterygium wilfordii HOM05D003642 ORTHO05D004460 4.6e-14 82.4 159 36.5
BcaB07g34071 Brassica carinata HOM05D003642 ORTHO05D004460 6.0e-14 82.0 173 34.7
Gohir.A08G142550 Gossypium hirsutum HOM05D003642 ORTHO05D004460 1.0e-13 81.3 133 39.1
C05p06380 Brassica napus HOM05D003642 ORTHO05D004460 1.3e-13 80.9 173 34.7
BolC5t29393H Brassica oleracea HOM05D003642 ORTHO05D004460 1.3e-13 80.9 173 34.7
Glyma.12G088000 Glycine max HOM05D003642 ORTHO05D004460 3.9e-13 79.3 155 32.3
SEGI_33073 Sequoiadendron giganteum HOM05D003642 ORTHO05D004460 2.5e-12 76.6 187 32.6
Glyma.12G088100 Glycine max HOM05D003642 ORTHO05D004460 2.8e-11 73.2 158 30.4
Gohir.A07G109500 Gossypium hirsutum HOM05D003642 ORTHO05D004460 6.2e-11 72.0 53 50.9
Gohir.D08G015066 Gossypium hirsutum HOM05D003642 ORTHO05D004460 6.2e-11 72.0 97 43.3
ECA233G1545 Erigeron canadensis HOM05D003642 ORTHO05D004460 4.0e-10 69.3 157 32.5
Psat5g158880 Pisum sativum HOM05D003642 ORTHO05D004460 8.9e-10 68.2 97 39.2
Mapoly0001s0264 Marchantia polymorpha HOM05D003642 ORTHO05D004460 3.8e-08 62.8 123 33.3
BcaB07g34070 Brassica carinata HOM05D003642 ORTHO05D004460 1.1e-07 61.2 126 35.7
Zm00001eb147290 Zea mays HOM05D003642 ORTHO05D004460 2.4e-07 60.1 168 27.4
Zm00001eb366950 Zea mays HOM05D003642 ORTHO05D004460 4.6e-06 55.8 168 28.6


User provided reference genes

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