Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR369G0312 Trochodendron aralioides HOM05D006279 ORTHO05D008055 5.7e-74 280.8 139 100.0
TAR623G0329 Trochodendron aralioides HOM05D006279 ORTHO05D008055 2.2e-41 172.6 104 79.8
Dinv44192 Davidia involucrata HOM05D006279 ORTHO05D008055 2.9e-33 145.6 106 67.0
QL10p041722 Quercus lobata HOM05D006279 ORTHO05D008055 1.1e-32 143.7 106 67.0
Peaxi162Scf00033g00134 Petunia axillaris HOM05D006279 ORTHO05D008055 8.6e-30 134.0 112 64.3
CSS0005410 Camellia sinensis var. sinensis HOM05D006279 ORTHO05D008055 1.5e-29 133.3 105 62.9
CSS0021017 Camellia sinensis var. sinensis HOM05D006279 ORTHO05D008055 3.3e-29 132.1 105 61.9
Nn2g15145 Nelumbo nucifera HOM05D006279 ORTHO05D008055 9.5e-29 130.6 104 66.3
Potri.005G066900 Populus trichocarpa HOM05D006279 ORTHO05D008055 1.6e-28 129.8 106 62.3
Sabra05G0055000 Salix brachista HOM05D006279 ORTHO05D008055 1.6e-28 129.8 106 61.3
TWI79G1313 Tripterygium wilfordii HOM05D006279 ORTHO05D008055 1.6e-28 129.8 105 62.9
Atru.chr1.2785 Acer truncatum HOM05D006279 ORTHO05D008055 2.1e-28 129.4 104 62.5
Eucgr.I00130 Eucalyptus grandis HOM05D006279 ORTHO05D008055 4.7e-28 128.3 94 67.0
Peaxi162Scf00386g00058 Petunia axillaris HOM05D006279 ORTHO05D008055 6.2e-28 127.9 115 60.9
Nitab4.5_0000829g0220 Nicotiana tabacum HOM05D006279 ORTHO05D008055 8.1e-28 127.5 115 60.9
Actinidia20026 Actinidia chinensis HOM05D006279 ORTHO05D008055 1.4e-27 126.7 104 60.6
Haze_02674 Corylus avellana HOM05D006279 ORTHO05D008055 1.4e-27 126.7 104 60.6
Cfa011174 Carpinus fangiana HOM05D006279 ORTHO05D008055 2.3e-27 125.9 104 58.7
Hma1.2p1_0847F.1_g227850 Hydrangea macrophylla HOM05D006279 ORTHO05D008055 2.3e-27 125.9 99 61.6
Nitab4.5_0000644g0080 Nicotiana tabacum HOM05D006279 ORTHO05D008055 3.1e-27 125.6 115 59.1
PGSC0003DMG400022672 Solanum tuberosum HOM05D006279 ORTHO05D008055 3.1e-27 125.6 114 58.8
Cc09_g10080 Coffea canephora HOM05D006279 ORTHO05D008055 5.2e-27 124.8 117 56.4
Cpa.g.sc2692.1 Carica papaya HOM05D006279 ORTHO05D008055 6.8e-27 124.4 106 60.4
Haze_02661 Corylus avellana HOM05D006279 ORTHO05D008055 6.8e-27 124.4 104 58.7
Solyc06g054590.3 Solanum lycopersicum HOM05D006279 ORTHO05D008055 6.8e-27 124.4 114 57.0
Sopen06g019660 Solanum pennellii HOM05D006279 ORTHO05D008055 6.8e-27 124.4 114 57.0
Potri.007G102600 Populus trichocarpa HOM05D006279 ORTHO05D008055 8.9e-27 124.0 104 57.7
CiPaw.14G026200 Carya illinoinensis HOM05D006279 ORTHO05D008055 1.2e-26 123.6 98 63.3
PGSC0003DMG400030782 Solanum tuberosum HOM05D006279 ORTHO05D008055 4.4e-26 121.7 87 65.5
Actinidia30262 Actinidia chinensis HOM05D006279 ORTHO05D008055 7.6e-26 120.9 105 53.3
CAN.G1592.9 Capsicum annuum HOM05D006279 ORTHO05D008055 7.6e-26 120.9 114 57.9
Glyma.08G354200 Glycine max HOM05D006279 ORTHO05D008055 7.6e-26 120.9 100 55.0
Nitab4.5_0001688g0060 Nicotiana tabacum HOM05D006279 ORTHO05D008055 7.6e-26 120.9 115 59.1
Nitab4.5_0010800g0010 Nicotiana tabacum HOM05D006279 ORTHO05D008055 7.6e-26 120.9 105 58.1
Oeu006489.1 Olea europaea HOM05D006279 ORTHO05D008055 7.6e-26 120.9 109 58.7
vmacro12040 Vaccinium macrocarpon HOM05D006279 ORTHO05D008055 2.2e-25 119.4 105 57.1
vmacro13565 Vaccinium macrocarpon HOM05D006279 ORTHO05D008055 2.9e-25 119.0 92 63.0
PGR119G2211 Punica granatum HOM05D006279 ORTHO05D008055 4.9e-25 118.2 121 50.4
Sabra07G0084300 Salix brachista HOM05D006279 ORTHO05D008055 4.9e-25 118.2 105 56.2
MBI06_g37673_MAGBIO Magnolia biondii HOM05D006279 ORTHO05D008055 6.4e-25 117.9 90 60.0
Gohir.A05G286900 Gossypium hirsutum HOM05D006279 ORTHO05D008055 1.9e-24 116.3 106 57.5
MSTRG.20541 Avicennia marina HOM05D006279 ORTHO05D008055 2.4e-24 115.9 104 55.8
Migut.B01200 Erythranthe guttata HOM05D006279 ORTHO05D008055 2.4e-24 115.9 84 64.3
MBI06_g46723_MAGBIO Magnolia biondii HOM05D006279 ORTHO05D008055 2.4e-24 115.9 87 60.9
Ciclev10003637m.g Citrus clementina HOM05D006279 ORTHO05D008055 3.2e-24 115.5 108 56.5
Phvul.008G125700 Phaseolus vulgaris HOM05D006279 ORTHO05D008055 3.2e-24 115.5 100 58.0
Thecc.08G189700 Theobroma cacao HOM05D006279 ORTHO05D008055 3.2e-24 115.5 106 53.8
Gohir.D05G287900 Gossypium hirsutum HOM05D006279 ORTHO05D008055 4.1e-24 115.2 106 56.6
Gorai.009G302900 Gossypium raimondii HOM05D006279 ORTHO05D008055 4.1e-24 115.2 106 56.6
MD09G1082400 Malus domestica HOM05D006279 ORTHO05D008055 5.4e-24 114.8 108 60.2
VMungo1383G1366 Vigna mungo HOM05D006279 ORTHO05D008055 5.4e-24 114.8 100 57.0
BraA10t44844Z Brassica rapa HOM05D006279 ORTHO05D008055 7.1e-24 114.4 107 55.1
CANSAT64G0511 Cannabis sativa HOM05D006279 ORTHO05D008055 7.1e-24 114.4 87 64.4
Lj1g0019467 Lotus japonicus HOM05D006279 ORTHO05D008055 7.1e-24 114.4 98 57.1
Manes.01G181300 Manihot esculenta HOM05D006279 ORTHO05D008055 1.2e-23 113.6 103 56.3
Thhalv10015068m.g Eutrema salsugineum HOM05D006279 ORTHO05D008055 1.6e-23 113.2 109 55.0
MD10G1003300 Malus domestica HOM05D006279 ORTHO05D008055 2.1e-23 112.8 105 60.0
Aqoxy2G01154 Aquilegia oxysepala HOM05D006279 ORTHO05D008055 2.7e-23 112.5 107 57.0
BraA02t04974Z Brassica rapa HOM05D006279 ORTHO05D008055 2.7e-23 112.5 109 54.1
THA.LOC104818424 Tarenaya hassleriana HOM05D006279 ORTHO05D008055 2.7e-23 112.5 104 51.9
AT5G09270 Arabidopsis thaliana HOM05D006279 ORTHO05D008055 3.5e-23 112.1 108 56.5
BolC9t59565H Brassica oleracea HOM05D004285 ORTHO05D005176 3.5e-23 112.1 102 55.9
CARHR204140 Cardamine hirsuta HOM05D006279 ORTHO05D008055 3.5e-23 112.1 107 57.0
Duzib177G0075 Durio zibethinus HOM05D006279 ORTHO05D008055 3.5e-23 112.1 106 53.8
Sc09g0002260 Simmondsia chinensis HOM05D006279 ORTHO05D008055 3.5e-23 112.1 100 56.0
COL.COLO4_11288 Corchorus olitorius HOM05D006279 ORTHO05D008055 4.6e-23 111.7 103 55.3
Glyma.18G170600 Glycine max HOM05D006279 ORTHO05D008055 4.6e-23 111.7 91 57.1
Carub.0006s0782 Capsella rubella HOM05D006279 ORTHO05D008055 6.0e-23 111.3 100 55.0
Prupe.3G241300 Prunus persica HOM05D006279 ORTHO05D008055 6.0e-23 111.3 107 54.2
arahy.Tifrunner.gnm1.ann1.YQI87S Arachis hypogaea HOM05D006279 ORTHO05D008055 1.0e-22 110.5 82 62.2
CANSAT78G0480 Cannabis sativa HOM05D006279 ORTHO05D008055 1.0e-22 110.5 92 57.6
AL6G19660 Arabidopsis lyrata HOM05D006279 ORTHO05D008055 1.7e-22 109.8 108 53.7
Ca_13203_v3 Cicer arietinum L. HOM05D006279 ORTHO05D008055 1.7e-22 109.8 99 53.5
ClCG02G000360 Citrullus lanatus HOM05D006279 ORTHO05D008055 1.7e-22 109.8 100 57.0
arahy.Tifrunner.gnm1.ann1.96G0FW Arachis hypogaea HOM05D006279 ORTHO05D008055 2.3e-22 109.4 105 53.3
Eucgr.L03476 Eucalyptus grandis HOM05D006279 ORTHO05D008055 2.3e-22 109.4 77 66.2
BcaB05g21561 Brassica carinata HOM05D006279 ORTHO05D008055 3.0e-22 109.0 101 53.5
CsaV3_2G019480 Cucumis sativus L. HOM05D006279 ORTHO05D008055 3.0e-22 109.0 101 56.4
FvH4_6g45500 Fragaria vesca HOM05D006279 ORTHO05D008055 3.0e-22 109.0 105 57.1
RcHm_v2.0_Chr2g0163441 Rosa chinensis HOM05D006279 ORTHO05D008055 3.0e-22 109.0 105 57.1
BcaB08g37221 Brassica carinata HOM05D006279 ORTHO05D008055 3.9e-22 108.6 108 52.8
A10p27950 Brassica napus HOM05D004285 ORTHO05D005176 3.9e-22 108.6 104 52.9
Lalb_Chr01g0022321 Lupinus albus HOM05D006279 ORTHO05D008055 3.9e-22 108.6 102 54.9
C09p68090 Brassica napus HOM05D004285 ORTHO05D005176 5.1e-22 108.2 102 52.9
C09p68110 Brassica napus HOM05D006279 ORTHO05D008055 5.1e-22 108.2 102 52.9
C09p68150 Brassica napus HOM05D006279 ORTHO05D008055 5.1e-22 108.2 102 52.9
FAN14G0828 Fragaria x ananassa HOM05D006279 ORTHO05D008055 5.1e-22 108.2 103 58.3
TPR.G17035 Trifolium pratense HOM05D006279 ORTHO05D008055 5.1e-22 108.2 89 57.3
Sp6g34040 Schrenkiella parvula HOM05D006279 ORTHO05D008055 6.6e-22 107.8 104 52.9
FAN09G2945 Fragaria x ananassa HOM05D006279 ORTHO05D008055 8.6e-22 107.5 93 59.1
FAN05G3461 Fragaria x ananassa HOM05D006279 ORTHO05D008055 1.1e-21 107.1 105 56.2
Psat6g191840 Pisum sativum HOM05D006279 ORTHO05D008055 1.1e-21 107.1 102 52.0
CAN.G256.17 Capsicum annuum HOM05D006279 ORTHO05D008055 1.9e-21 106.3 97 55.7
C09p68050 Brassica napus HOM05D006279 ORTHO05D008055 3.3e-21 105.5 100 53.0
BolC2t06340H Brassica oleracea HOM05D006279 ORTHO05D008055 3.3e-21 105.5 90 55.6
Ah.06g190980 Amaranthus hybridus HOM05D006279 ORTHO05D008055 4.3e-21 105.1 97 56.7
EL10Ac4g09617 Beta vulgaris HOM05D006279 ORTHO05D008055 4.3e-21 105.1 94 54.3
BcaC03g13247 Brassica carinata HOM05D006279 ORTHO05D008055 4.3e-21 105.1 98 55.1
C02p03790 Brassica napus HOM05D006279 ORTHO05D008055 4.3e-21 105.1 98 55.1
MELO3C023226.2 Cucumis melo HOM05D006279 ORTHO05D008055 4.3e-21 105.1 82 62.2
GSVIVG01023542001 Vitis vinifera HOM05D006279 ORTHO05D008055 1.2e-20 103.6 97 54.6
SHI36067 Sapria himalayana HOM05D006279 ORTHO05D008055 1.6e-20 103.2 91 58.2
Aa31LG3G17730 Aethionema arabicum HOM05D006279 ORTHO05D008055 2.1e-20 102.8 105 49.5
ATR0824G232 Amborella trichopoda HOM05D006279 ORTHO05D008055 2.1e-20 102.8 95 54.7
Rhsim10G0172600 Rhododendron simsii HOM05D006279 ORTHO05D008055 2.8e-20 102.4 78 64.1
Eucgr.I00134 Eucalyptus grandis HOM05D006279 ORTHO05D008055 6.2e-20 101.3 76 61.8
Psat4g003200 Pisum sativum HOM05D006279 ORTHO05D008055 6.2e-20 101.3 102 52.0
arahy.Tifrunner.gnm1.ann1.BRZ89T Arachis hypogaea HOM05D006279 ORTHO05D008055 1.1e-19 100.5 84 56.0
AUR62000510 Chenopodium quinoa HOM05D006279 ORTHO05D008055 1.4e-19 100.1 95 55.8
AUR62006855 Chenopodium quinoa HOM05D006279 ORTHO05D008055 1.4e-19 100.1 108 52.8
DCAR_026025 Daucus carota HOM05D006279 ORTHO05D008055 1.4e-19 100.1 85 57.6
Sed0009157 Sechium edule HOM05D006279 ORTHO05D008055 3.1e-19 99.0 101 51.5
Eucgr.I00143 Eucalyptus grandis HOM05D006279 ORTHO05D008055 6.8e-19 97.8 76 59.2
HanXRQChr10g0308251 Helianthus annuus HOM05D006279 ORTHO05D008055 8.9e-19 97.4 102 49.0
COL.COLO4_13057 Corchorus olitorius HOM05D006279 ORTHO05D008055 2.0e-18 96.3 108 50.9
Atru.chr9.833 Acer truncatum HOM05D000003 ORTHO05D000126 2.6e-18 95.9 72 63.9
Medtr1g098510 Medicago truncatula HOM05D006279 ORTHO05D008055 2.6e-18 95.9 108 49.1
HPP92_013811 Vanilla planifolia HOM05D006279 ORTHO05D008055 7.6e-18 94.4 93 54.8
Lsat_1_v5_gn_5_86080 Lactuca sativa HOM05D006279 ORTHO05D008055 1.7e-17 93.2 103 49.5
Os01g0861000 Oryza sativa ssp. japonica HOM05D006279 ORTHO05D008055 8.4e-17 90.9 61 70.5
Sopen01g029410 Solanum pennellii HOM05D006279 ORTHO05D008055 2.5e-13 79.3 68 54.4
arahy.Tifrunner.gnm1.ann1.BUL9CE Arachis hypogaea HOM05D006279 ORTHO05D008055 1.3e-12 77.0 59 57.6
SEGI_20234 Sequoiadendron giganteum HOM05D006279 ORTHO05D008055 4.8e-12 75.1 64 51.6
COL.COLO4_36340 Corchorus olitorius HOM05D006279 ORTHO05D008055 6.9e-11 71.2 70 47.1
Pp3c8_7150 Physcomitrium patens HOM05D006279 ORTHO05D008055 1.4e-08 63.5 69 42.0
Hma1.2p1_4173F.1_g338420 Hydrangea macrophylla HOM05D006279 ORTHO05D008055 4.2e-08 62.0 47 59.6
Mapoly0027s0076 Marchantia polymorpha HOM05D006279 ORTHO05D008055 1.6e-07 60.1 60 41.7


User provided reference genes

Program Settings