Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR369G0297 Trochodendron aralioides HOM05D000081 ORTHO05D008417 8.0e-97 357.1 177 100.0
TAR633G0876 Trochodendron aralioides HOM05D000081 ORTHO05D008417 2.2e-46 189.5 141 66.7
TAR623G0585 Trochodendron aralioides HOM05D000081 ORTHO05D008417 1.4e-45 186.8 142 70.4
Dinv37159 Davidia involucrata HOM05D000081 ORTHO05D008417 6.6e-43 177.9 144 64.6
Nn2g11153 Nelumbo nucifera HOM05D000081 ORTHO05D008417 1.3e-41 173.7 140 66.4
Nn2g13394 Nelumbo nucifera HOM05D000081 ORTHO05D008417 3.1e-40 169.1 142 64.1
GSVIVG01034148001 Vitis vinifera HOM05D000081 ORTHO05D008417 2.2e-38 162.9 143 62.2
Haze_20816 Corylus avellana HOM05D000081 ORTHO05D008417 4.9e-38 161.8 143 60.8
RcHm_v2.0_Chr3g0466341 Rosa chinensis HOM05D000081 ORTHO05D008417 1.1e-37 160.6 142 60.6
Thecc.05G037200 Theobroma cacao HOM05D000081 ORTHO05D008417 2.4e-37 159.5 136 61.8
FvH4_6g13470 Fragaria vesca HOM05D000081 ORTHO05D008417 2.1e-36 156.4 142 59.2
FAN14G2222 Fragaria x ananassa HOM05D000081 ORTHO05D008417 2.1e-36 156.4 142 59.2
MD04G1131000 Malus domestica HOM05D000081 ORTHO05D008417 2.1e-36 156.4 143 58.7
FAN05G3265 Fragaria x ananassa HOM05D000081 ORTHO05D008417 2.7e-36 156.0 142 59.2
Cfa017357 Carpinus fangiana HOM05D000081 ORTHO05D008417 3.5e-36 155.6 144 59.7
FAN09G1616 Fragaria x ananassa HOM05D000081 ORTHO05D008417 4.6e-36 155.2 142 58.5
MD12G1144100 Malus domestica HOM05D000081 ORTHO05D008417 7.9e-36 154.5 143 58.7
QL07p048759 Quercus lobata HOM05D000081 ORTHO05D008417 7.9e-36 154.5 143 57.3
Sabra06G0066400 Salix brachista HOM05D000081 ORTHO05D008417 1.7e-35 153.3 136 59.6
MBI05_g46007_MAGBIO Magnolia biondii HOM05D000081 ORTHO05D008417 2.3e-35 152.9 141 58.2
Prupe.6G257500 Prunus persica HOM05D000081 ORTHO05D008417 6.6e-35 151.4 139 58.3
FAN02G1604 Fragaria x ananassa HOM05D000081 ORTHO05D008417 1.5e-34 150.2 142 57.7
Actinidia05321 Actinidia chinensis HOM05D000081 ORTHO05D008417 3.3e-34 149.1 137 57.7
Manes.08G084300 Manihot esculenta HOM05D000081 ORTHO05D008417 3.3e-34 149.1 149 59.7
Duzib106G0090 Durio zibethinus HOM05D000081 ORTHO05D008417 4.3e-34 148.7 139 58.3
VMungo1383G0693 Vigna mungo HOM05D000081 ORTHO05D008417 4.3e-34 148.7 145 58.6
Phvul.008G119400 Phaseolus vulgaris HOM05D000081 ORTHO05D008417 5.6e-34 148.3 145 57.2
Rhsim04G0158500 Rhododendron simsii HOM05D000081 ORTHO05D008417 5.6e-34 148.3 137 59.1
Duzib128G0900 Durio zibethinus HOM05D000081 ORTHO05D008417 9.6e-34 147.5 138 60.1
Potri.006G087000 Populus trichocarpa HOM05D000081 ORTHO05D008417 1.3e-33 147.1 146 56.8
COL.COLO4_14779 Corchorus olitorius HOM05D000181 ORTHO05D003134 2.8e-33 146.0 142 56.3
ATR0559G094 Amborella trichopoda HOM05D000081 ORTHO05D008417 3.6e-33 145.6 137 54.7
Hma1.2p1_0936F.1_g238870 Hydrangea macrophylla HOM05D000081 ORTHO05D008417 6.2e-33 144.8 147 57.8
Gorai.012G104800 Gossypium raimondii HOM05D000081 ORTHO05D008417 1.5e-31 140.2 139 53.2
Medtr7g062220 Medicago truncatula HOM05D000081 ORTHO05D008417 1.5e-31 140.2 141 53.9
Gohir.D04G121900 Gossypium hirsutum HOM05D000081 ORTHO05D008417 2.0e-31 139.8 139 53.2
Atru.chr8.1995 Acer truncatum HOM05D000081 ORTHO05D008417 4.5e-31 138.7 143 54.5
Aqoxy2G02261 Aquilegia oxysepala HOM05D000081 ORTHO05D008417 9.9e-31 137.5 142 54.2
Psat3g139280 Pisum sativum HOM05D000081 ORTHO05D008417 2.2e-30 136.3 144 53.5
Potri.016G099900 Populus trichocarpa HOM05D000081 ORTHO05D008417 2.2e-30 136.3 146 52.1
Ciclev10013616m.g Citrus clementina HOM05D000081 ORTHO05D008417 2.9e-30 136.0 149 52.3
Gohir.A04G083200 Gossypium hirsutum HOM05D000081 ORTHO05D008417 3.8e-30 135.6 139 52.5
PSO063G0390 Papaver somniferum HOM05D000081 ORTHO05D008417 6.4e-30 134.8 162 50.6
CiPaw.09G194700 Carya illinoinensis HOM05D000081 ORTHO05D008417 1.4e-29 133.7 151 51.0
vmacro08644 Vaccinium macrocarpon HOM05D000081 ORTHO05D008417 1.4e-29 133.7 146 54.1
arahy.Tifrunner.gnm1.ann1.CJ9CGG Arachis hypogaea HOM05D000081 ORTHO05D008417 1.9e-29 133.3 137 54.7
Lalb_Chr01g0022561 Lupinus albus HOM05D000081 ORTHO05D008417 2.4e-29 132.9 152 51.3
PSO339G6317 Papaver somniferum HOM05D000081 ORTHO05D008417 4.2e-29 132.1 160 49.4
TPR.G40440 Trifolium pratense HOM05D000081 ORTHO05D008417 7.1e-29 131.3 136 55.1
Lj1g0016246 Lotus japonicus HOM05D000081 ORTHO05D008417 4.6e-28 128.6 144 52.1
CSS0026457 Camellia sinensis var. sinensis HOM05D000081 ORTHO05D008417 7.9e-28 127.9 144 52.8
Lsat_1_v5_gn_9_33061 Lactuca sativa HOM05D000081 ORTHO05D008417 1.0e-27 127.5 139 50.4
Cc06_g02490 Coffea canephora HOM05D000081 ORTHO05D008417 1.3e-27 127.1 135 50.4
CiPaw.10G146700 Carya illinoinensis HOM05D000081 ORTHO05D008417 3.0e-27 125.9 142 51.4
TWI74G1640 Tripterygium wilfordii HOM05D000081 ORTHO05D008417 3.0e-27 125.9 152 48.7
arahy.Tifrunner.gnm1.ann1.UJY589 Arachis hypogaea HOM05D000081 ORTHO05D008417 2.5e-26 122.9 99 62.6
THA.LOC104827022 Tarenaya hassleriana HOM05D000081 ORTHO05D008417 3.3e-26 122.5 149 50.3
Eucgr.K03115 Eucalyptus grandis HOM05D000081 ORTHO05D008417 5.6e-26 121.7 130 50.8
Nitab4.5_0008284g0010 Nicotiana tabacum HOM05D000081 ORTHO05D008417 7.4e-26 121.3 151 46.4
Haze_20730 Corylus avellana HOM05D000081 ORTHO05D008417 1.3e-25 120.6 141 51.1
PGR004G2790 Punica granatum HOM05D000081 ORTHO05D008417 1.6e-25 120.2 133 50.4
Glyma.18G183100 Glycine max HOM05D000081 ORTHO05D008417 3.7e-25 119.0 99 61.6
Glyma.07G133700 Glycine max HOM05D000081 ORTHO05D008417 6.2e-25 118.2 91 65.9
HanXRQChr16g0499001 Helianthus annuus HOM05D000081 ORTHO05D008417 6.2e-25 118.2 138 48.6
Gorai.006G171700 Gossypium raimondii HOM05D000081 ORTHO05D008417 8.1e-25 117.9 137 53.3
Gohir.D09G150400 Gossypium hirsutum HOM05D000081 ORTHO05D008417 1.8e-24 116.7 137 52.6
Gohir.A09G154900 Gossypium hirsutum HOM05D000081 ORTHO05D008417 3.1e-24 115.9 134 52.2
Nitab4.5_0000705g0150 Nicotiana tabacum HOM05D000081 ORTHO05D008417 9.0e-24 114.4 152 45.4
MBI05_g29696_MAGBIO Magnolia biondii HOM05D000081 ORTHO05D008417 6.5e-22 108.2 106 56.6
MELO3C003140.2 Cucumis melo HOM05D000081 ORTHO05D008417 1.9e-21 106.7 119 49.6
Migut.J00318 Erythranthe guttata HOM05D000081 ORTHO05D008417 1.9e-21 106.7 150 46.0
CANSAT11G0955 Cannabis sativa HOM05D000081 ORTHO05D008417 2.5e-21 106.3 165 43.6
SGA_v2.0_scaffold126G33773 Striga asiatica HOM05D000081 ORTHO05D008417 2.5e-21 106.3 148 48.0
Peaxi162Scf00165g00815 Petunia axillaris HOM05D000081 ORTHO05D008417 4.2e-21 105.5 150 46.0
CAN.G1293.3 Capsicum annuum HOM05D000081 ORTHO05D008417 9.3e-21 104.4 152 43.4
ECA247G0532 Erigeron canadensis HOM05D000081 ORTHO05D008417 9.3e-21 104.4 141 41.8
MSTRG.5653 Avicennia marina HOM05D000081 ORTHO05D008417 1.2e-20 104.0 131 47.3
CsaV3_4G025110 Cucumis sativus L. HOM05D000081 ORTHO05D008417 2.1e-20 103.2 130 48.5
Oeu001862.1 Olea europaea HOM05D000181 ORTHO05D003134 2.1e-20 103.2 141 46.1
Cpa.g.sc169.18 Carica papaya HOM05D000081 ORTHO05D008417 4.6e-20 102.1 130 46.9
Ah.12g059930 Amaranthus hybridus HOM05D000081 ORTHO05D008417 1.8e-19 100.1 89 57.3
EL10As1g23086 Beta vulgaris HOM05D000081 ORTHO05D008417 1.8e-19 100.1 85 58.8
AT5G43290 Arabidopsis thaliana HOM05D000081 ORTHO05D008417 2.3e-19 99.8 144 41.7
AL8G17120 Arabidopsis lyrata HOM05D000081 ORTHO05D008417 3.0e-19 99.4 142 40.8
AL97U10020 Arabidopsis lyrata HOM05D000081 ORTHO05D008417 3.0e-19 99.4 142 40.8
Solyc09g010960.3 Solanum lycopersicum HOM05D000081 ORTHO05D008417 8.7e-19 97.8 142 43.0
Sopen09g005680 Solanum pennellii HOM05D000081 ORTHO05D008417 8.7e-19 97.8 142 43.0
DCAR_028753 Daucus carota HOM05D000081 ORTHO05D008417 1.1e-18 97.4 140 43.6
CARHR180440 Cardamine hirsuta HOM05D000081 ORTHO05D008417 1.9e-18 96.7 138 40.6
Thhalv10003250m.g Eutrema salsugineum HOM05D000081 ORTHO05D008417 3.3e-18 95.9 138 44.9
Sp2g08100 Schrenkiella parvula HOM05D000081 ORTHO05D008417 3.3e-18 95.9 141 40.4
Zm00001eb139800 Zea mays HOM05D000081 ORTHO05D008417 3.3e-18 95.9 104 51.9
Os01g0972800 Oryza sativa ssp. japonica HOM05D000081 ORTHO05D008417 7.4e-18 94.7 183 37.7
AL8G17150 Arabidopsis lyrata HOM05D000081 ORTHO05D008417 1.6e-17 93.6 142 38.7
TAR636G1554 Trochodendron aralioides HOM05D000095 ORTHO05D000393 2.1e-17 93.2 47 87.2
AL8G17140 Arabidopsis lyrata HOM05D000081 ORTHO05D008417 2.8e-17 92.8 142 38.7
AL97U10010 Arabidopsis lyrata HOM05D000081 ORTHO05D008417 2.8e-17 92.8 142 38.7
HPP92_012598 Vanilla planifolia HOM05D000081 ORTHO05D008417 6.2e-17 91.7 141 39.7
Os01g0842801 Oryza sativa ssp. japonica HOM05D000081 ORTHO05D008417 3.4e-15 85.9 96 50.0
TPR.G1686 Trifolium pratense HOM05D000081 ORTHO05D008417 5.8e-15 85.1 52 73.1
BcaC04g21933 Brassica carinata HOM05D000081 ORTHO05D008417 7.6e-15 84.7 140 38.6
C09p25680 Brassica napus HOM05D000081 ORTHO05D008417 7.6e-15 84.7 140 38.6
BolC9t55471H Brassica oleracea HOM05D000081 ORTHO05D008417 7.6e-15 84.7 140 38.6
BcaNung06845 Brassica carinata HOM05D000081 ORTHO05D008417 1.0e-14 84.3 87 48.3
TAR627G0100 Trochodendron aralioides HOM05D000022 ORTHO05D000071 1.3e-14 84.0 39 97.4
A09p20260 Brassica napus HOM05D000081 ORTHO05D008417 1.7e-14 83.6 141 35.5
Zm00001eb367920 Zea mays HOM05D000081 ORTHO05D008417 3.8e-14 82.4 167 36.5
Oeu038420.1 Olea europaea HOM05D000081 ORTHO05D008417 6.5e-14 81.6 98 50.0
Sc20g0005020 Simmondsia chinensis HOM05D000081 ORTHO05D008417 8.4e-14 81.3 118 43.2
HPP92_006624 Vanilla planifolia HOM05D000081 ORTHO05D008417 8.4e-14 81.3 126 42.1
Aa31LG9G13390 Aethionema arabicum HOM05D000081 ORTHO05D008417 3.5e-12 75.9 139 38.1
ClCG04G008080 Citrullus lanatus HOM05D000081 ORTHO05D008417 4.6e-12 75.5 94 50.0
Zm00001eb148260 Zea mays HOM05D000081 ORTHO05D008417 6.1e-12 75.1 100 43.0
BcaC04g21934 Brassica carinata HOM05D000081 ORTHO05D008417 7.9e-12 74.7 62 53.2
Carub.0008s0537 Capsella rubella HOM05D000081 ORTHO05D008417 1.8e-11 73.6 56 57.1
PSO478G4389 Papaver somniferum HOM05D000081 ORTHO05D008417 5.1e-11 72.0 127 40.2
Sed0001321 Sechium edule HOM05D000081 ORTHO05D008417 6.7e-11 71.6 108 42.6
SEGI_28147 Sequoiadendron giganteum HOM05D000081 ORTHO05D008417 8.7e-11 71.2 152 35.5
SEGI_17068 Sequoiadendron giganteum HOM05D000081 ORTHO05D008417 2.2e-09 66.6 168 32.1
SEGI_11981 Sequoiadendron giganteum HOM05D000081 ORTHO05D008417 8.2e-09 64.7 161 34.2
SEGI_14586 Sequoiadendron giganteum HOM05D000081 ORTHO05D008417 8.2e-09 64.7 161 34.2
Lj4g0001781 Lotus japonicus HOM05D000081 ORTHO05D007129 2.9e-06 56.2 65 44.6
THA.LOC104819904 Tarenaya hassleriana HOM05D000081 ORTHO05D007129 3.8e-06 55.8 84 35.7
BcaNung02732 Brassica carinata HOM05D000081 ORTHO05D007129 5.0e-06 55.5 107 36.4
BcaB03g12667 Brassica carinata HOM05D000081 ORTHO05D007129 8.5e-06 54.7 80 38.8


User provided reference genes

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