Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR369G0267 Trochodendron aralioides HOM05D004355 ORTHO05D005228 1.6e-258 895.6 457 100.0
TAR633G2000 Trochodendron aralioides HOM05D004355 ORTHO05D005228 5.8e-200 701.0 464 78.2
TAR636G0816 Trochodendron aralioides HOM05D004355 ORTHO05D005228 4.3e-195 684.9 464 75.9
Nn2g13729 Nelumbo nucifera HOM05D004355 ORTHO05D005228 8.5e-175 617.5 464 68.1
CANSAT80G0576 Cannabis sativa HOM05D004355 ORTHO05D005228 1.0e-156 557.4 470 62.6
TWI77G0715 Tripterygium wilfordii HOM05D004355 ORTHO05D005228 5.7e-155 551.6 473 61.7
Manes.08G008600 Manihot esculenta HOM05D004355 ORTHO05D005228 6.3e-154 548.1 476 62.0
PSO339G4715 Papaver somniferum HOM05D004355 ORTHO05D005228 9.1e-153 544.3 482 60.4
TWI74G0762 Tripterygium wilfordii HOM05D004355 ORTHO05D005228 1.7e-151 540.0 478 60.9
Atru.chr8.1850 Acer truncatum HOM05D004355 ORTHO05D005228 8.5e-151 537.7 464 61.2
Haze_20575 Corylus avellana HOM05D004355 ORTHO05D005228 2.5e-150 536.2 470 61.5
Cfa017577 Carpinus fangiana HOM05D004355 ORTHO05D005228 6.1e-149 531.6 470 60.9
Dinv35767 Davidia involucrata HOM05D004355 ORTHO05D003235 6.1e-149 531.6 468 62.0
Lj1g0007988 Lotus japonicus HOM05D004355 ORTHO05D005228 6.3e-146 521.5 462 60.2
Manes.09G063900 Manihot esculenta HOM05D004355 ORTHO05D005228 6.3e-146 521.5 473 59.4
CiPaw.10G132700 Carya illinoinensis HOM05D004355 ORTHO05D005228 8.2e-146 521.2 468 59.0
Hma1.2p1_1099F.1_g256870 Hydrangea macrophylla HOM05D004355 ORTHO05D005228 4.5e-144 515.4 459 59.7
QL07p044062 Quercus lobata HOM05D004355 ORTHO05D005228 4.5e-144 515.4 481 57.6
Potri.006G126600 Populus trichocarpa HOM05D004355 ORTHO05D005228 6.5e-143 511.5 463 58.3
Glyma.03G182000 Glycine max HOM05D004355 ORTHO05D005228 2.5e-142 509.6 465 58.7
MELO3C009345.2 Cucumis melo HOM05D004355 ORTHO05D005228 4.2e-142 508.8 471 58.6
Sed0019590 Sechium edule HOM05D004355 ORTHO05D005228 5.5e-142 508.4 470 59.4
CsaV3_3G035850 Cucumis sativus L. HOM05D004355 ORTHO05D005228 7.2e-142 508.1 471 58.6
Potri.016G091400 Populus trichocarpa HOM05D004355 ORTHO05D005228 1.2e-141 507.3 462 58.2
Lalb_Chr01g0018741 Lupinus albus HOM05D004355 ORTHO05D005228 1.6e-141 506.9 475 58.5
Phvul.001G178100 Phaseolus vulgaris HOM05D004355 ORTHO05D005228 1.6e-141 506.9 468 58.5
Glyma.19G182500 Glycine max HOM05D004355 ORTHO05D005228 2.7e-141 506.1 464 58.2
Sabra06G0099700 Salix brachista HOM05D004355 ORTHO05D005228 2.3e-140 503.1 465 57.6
Prupe.6G235000 Prunus persica HOM05D004355 ORTHO05D005228 3.0e-140 502.7 463 59.8
VMungo1383G3555 Vigna mungo HOM05D004355 ORTHO05D005228 5.2e-140 501.9 463 58.3
MD04G1095900 Malus domestica HOM05D004355 ORTHO05D005228 3.4e-139 499.2 458 58.7
ClCG10G020240 Citrullus lanatus HOM05D004355 ORTHO05D005228 8.3e-138 494.6 458 59.2
Sc02g0001740 Simmondsia chinensis HOM05D004355 ORTHO05D005228 1.4e-137 493.8 460 56.3
Aqoxy1G01202 Aquilegia oxysepala HOM05D004355 ORTHO05D005228 3.1e-137 492.7 467 59.5
Ca_08851_v3 Cicer arietinum L. HOM05D004355 ORTHO05D005228 2.7e-136 489.6 478 53.3
Thecc.05G062900 Theobroma cacao HOM05D004355 ORTHO05D005228 4.5e-136 488.8 451 58.5
Ciclev10011674m.g Citrus clementina HOM05D004355 ORTHO05D005228 2.9e-135 486.1 457 57.3
CSS0012498 Camellia sinensis var. sinensis HOM05D004355 ORTHO05D005228 8.6e-135 484.6 465 57.2
TPR.G9373 Trifolium pratense HOM05D004355 ORTHO05D005228 2.5e-134 483.0 484 53.1
CSS0041806 Camellia sinensis var. sinensis HOM05D004355 ORTHO05D005228 1.2e-133 480.7 472 55.5
CSS0033330 Camellia sinensis var. sinensis HOM05D004355 ORTHO05D005228 2.1e-133 479.9 474 55.3
Cpa.g.sc92.114 Carica papaya HOM05D004355 ORTHO05D005228 2.8e-133 479.6 471 56.5
Duzib128G1889 Durio zibethinus HOM05D004355 ORTHO05D005228 2.8e-133 479.6 451 57.2
Lalb_Chr25g0289061 Lupinus albus HOM05D004355 ORTHO05D005228 2.8e-133 479.6 464 57.1
Gohir.A09G148600 Gossypium hirsutum HOM05D004355 ORTHO05D005228 3.6e-133 479.2 453 57.0
Gorai.006G165700 Gossypium raimondii HOM05D004355 ORTHO05D005228 3.6e-133 479.2 453 57.2
Gohir.D09G144400 Gossypium hirsutum HOM05D004355 ORTHO05D005228 6.1e-133 478.4 453 57.2
Duzib106G0643 Durio zibethinus HOM05D004355 ORTHO05D005228 1.0e-132 477.6 451 57.4
FAN05G2251 Fragaria x ananassa HOM05D004355 ORTHO05D005228 1.0e-132 477.6 449 58.8
AUR62039881 Chenopodium quinoa HOM05D004355 ORTHO05D005228 1.4e-132 477.2 451 56.3
FvH4_6g16100 Fragaria vesca HOM05D004355 ORTHO05D005228 1.8e-132 476.9 458 58.3
COL.COLO4_26990 Corchorus olitorius HOM05D004355 ORTHO05D005228 3.0e-132 476.1 451 57.4
FAN02G3539 Fragaria x ananassa HOM05D004355 ORTHO05D005228 3.0e-132 476.1 455 58.0
Duzib093G1016 Durio zibethinus HOM05D004355 ORTHO05D005228 9.8e-131 471.1 451 56.3
DCAR_009301 Daucus carota HOM05D004355 ORTHO05D005228 8.3e-130 468.0 454 53.3
Gohir.D04G112100 Gossypium hirsutum HOM05D004355 ORTHO05D005228 2.4e-129 466.5 449 54.8
PGR004G0459 Punica granatum HOM05D004355 ORTHO05D005228 2.4e-129 466.5 464 56.5
Psat3g043400 Pisum sativum HOM05D004355 ORTHO05D005228 4.1e-129 465.7 470 52.8
Gohir.A04G073200 Gossypium hirsutum HOM05D004355 ORTHO05D005228 5.4e-129 465.3 449 54.6
Gorai.009G416200 Gossypium raimondii HOM05D004355 ORTHO05D005228 5.4e-129 465.3 449 54.8
Medtr7g101730 Medicago truncatula HOM05D004355 ORTHO05D005228 7.8e-128 461.5 485 51.5
THA.LOC104806491 Tarenaya hassleriana HOM05D004355 ORTHO05D005228 6.6e-127 458.4 465 54.0
Gohir.D01G128600 Gossypium hirsutum HOM05D004355 ORTHO05D005228 8.6e-127 458.0 452 56.2
Gohir.A01G139600 Gossypium hirsutum HOM05D004355 ORTHO05D005228 3.3e-126 456.1 454 56.4
MELO3C014220.2 Cucumis melo HOM05D004355 ORTHO05D005228 1.4e-124 450.7 464 52.6
Aa31LG5G22300 Aethionema arabicum HOM05D004355 ORTHO05D005228 3.0e-124 449.5 463 53.1
CsaV3_6G039740 Cucumis sativus L. HOM05D004355 ORTHO05D005228 5.7e-123 445.3 462 52.6
AL4G33360 Arabidopsis lyrata HOM05D004355 ORTHO05D005228 1.3e-122 444.1 461 52.9
Ah.08g211740 Amaranthus hybridus HOM05D004355 ORTHO05D005228 2.2e-122 443.4 464 51.5
THA.LOC104823460 Tarenaya hassleriana HOM05D004355 ORTHO05D005228 2.2e-122 443.4 465 52.9
ClCG04G009160 Citrullus lanatus HOM05D004355 ORTHO05D005228 4.9e-122 442.2 464 51.7
BolC4t22685H Brassica oleracea HOM05D004355 ORTHO05D005228 1.2e-120 437.6 458 53.1
BcaC02g11829 Brassica carinata HOM05D004355 ORTHO05D005228 3.5e-120 436.0 463 52.3
BraA05t19847Z Brassica rapa HOM05D004355 ORTHO05D005228 1.0e-119 434.5 456 52.4
C04p10920 Brassica napus HOM05D004355 ORTHO05D005228 1.7e-119 433.7 463 52.1
A05p08800 Brassica napus HOM05D004355 ORTHO05D005228 1.5e-118 430.6 452 51.5
PGSC0003DMG400035240 Solanum tuberosum HOM05D004355 ORTHO05D005228 1.2e-117 427.6 452 50.0
Sabra16G0096600 Salix brachista HOM05D004355 ORTHO05D005228 1.6e-117 427.2 603 42.6
Nitab4.5_0002963g0100 Nicotiana tabacum HOM05D004355 ORTHO05D005228 2.6e-115 419.9 446 50.2
vmacro08776 Vaccinium macrocarpon HOM05D004355 ORTHO05D005228 1.7e-114 417.2 517 47.4
Sp4g19340 Schrenkiella parvula HOM05D004355 ORTHO05D005228 2.2e-114 416.8 466 52.1
EL10Ac7g16576 Beta vulgaris HOM05D004355 ORTHO05D005228 9.2e-113 411.4 441 52.2
Sopen09g002770 Solanum pennellii HOM05D004355 ORTHO05D005228 1.6e-112 410.6 437 50.1
Solyc09g007950.3 Solanum lycopersicum HOM05D004355 ORTHO05D005228 3.5e-112 409.5 437 50.1
Cc06_g04030 Coffea canephora HOM05D004355 ORTHO05D005228 2.3e-111 406.8 454 48.2
Migut.L01688 Erythranthe guttata HOM05D004355 ORTHO05D005228 3.0e-111 406.4 459 48.1
vmacro20020 Vaccinium macrocarpon HOM05D004355 ORTHO05D005228 9.5e-110 401.4 467 50.3
Dinv37299 Davidia involucrata HOM05D004355 ORTHO05D005228 1.2e-109 401.0 338 62.1
Rhsim05G0179400 Rhododendron simsii HOM05D004355 ORTHO05D005228 2.1e-109 400.2 459 50.3
Gorai.002G162400 Gossypium raimondii HOM05D004355 ORTHO05D005228 4.7e-109 399.1 399 56.1
HanXRQChr11g0350251 Helianthus annuus HOM05D004355 ORTHO05D005228 1.1e-108 397.9 437 50.3
PGR004G2422 Punica granatum HOM05D004355 ORTHO05D005228 1.5e-107 394.0 453 51.0
SalBow5G3882 Salvia bowleyana HOM05D004355 ORTHO05D005228 2.0e-107 393.7 446 47.3
SalBow5G3919 Salvia bowleyana HOM05D004355 ORTHO05D005228 2.6e-107 393.3 446 47.3
MSTRG.26701 Avicennia marina HOM05D004355 ORTHO05D005228 1.7e-106 390.6 450 47.1
Sed0012541 Sechium edule HOM05D004355 ORTHO05D005228 2.4e-105 386.7 455 50.5
AT2G37035 Arabidopsis thaliana HOM05D004355 ORTHO05D005228 5.4e-105 385.6 462 48.7
Actinidia19660 Actinidia chinensis HOM05D004355 ORTHO05D005228 2.7e-104 383.3 453 49.0
Nitab4.5_0000101g0300 Nicotiana tabacum HOM05D004355 ORTHO05D005228 2.7e-104 383.3 419 49.4
CARHR131530 Cardamine hirsuta HOM05D004355 ORTHO05D005228 7.8e-104 381.7 460 48.0
Carub.0004s1891 Capsella rubella HOM05D004355 ORTHO05D005228 2.3e-103 380.2 468 47.9
ECA248G2910 Erigeron canadensis HOM05D004355 ORTHO05D005228 2.3e-103 380.2 439 49.4
SGA_v2.0_scaffold75G24855 Striga asiatica HOM05D004355 ORTHO05D005228 6.6e-103 378.6 453 47.0
Rhsim04G0145100 Rhododendron simsii HOM05D004355 ORTHO05D005228 7.3e-102 375.2 579 42.0
Eucgr.A01137 Eucalyptus grandis HOM05D004355 ORTHO05D005228 6.8e-100 368.6 268 66.8
AUR62040465 Chenopodium quinoa HOM05D004355 ORTHO05D005228 1.1e-97 361.3 341 55.4
HanXRQChr13g0399881 Helianthus annuus HOM05D004355 ORTHO05D005228 2.4e-97 360.1 457 46.6
unitig_746.g26764 Utricularia gibba HOM05D004355 ORTHO05D005228 4.6e-96 355.9 450 44.9
unitig_899.g15220 Utricularia gibba HOM05D002910 ORTHO05D003235 1.9e-94 350.5 451 44.6
ECA233G2716 Erigeron canadensis HOM05D004355 ORTHO05D005228 5.6e-94 349.0 426 44.6
RcHm_v2.0_Chr3g0469941 Rosa chinensis HOM05D004355 ORTHO05D005228 5.6e-94 349.0 258 66.3
FAN14G0897 Fragaria x ananassa HOM05D004355 ORTHO05D005228 4.7e-93 345.9 259 65.3
FAN14G5907 Fragaria x ananassa HOM05D004355 ORTHO05D005228 4.7e-93 345.9 259 65.3
MD12G1115900 Malus domestica HOM05D004355 ORTHO05D005228 8.4e-90 335.1 463 44.9
GSVIVG01025706001 Vitis vinifera HOM05D004355 ORTHO05D005228 2.1e-88 330.5 267 64.0
Peaxi162Scf00123g01123 Petunia axillaris HOM05D004355 ORTHO05D005228 1.5e-86 324.3 456 42.8
Lsat_1_v5_gn_1_53141 Lactuca sativa HOM05D004355 ORTHO05D005228 2.5e-86 323.6 368 49.2
Lsat_1_v5_gn_6_31260 Lactuca sativa HOM05D004355 ORTHO05D005228 3.3e-86 323.2 438 42.5
FAN09G2012 Fragaria x ananassa HOM05D004355 ORTHO05D005228 3.6e-85 319.7 350 54.3
Migut.J00528 Erythranthe guttata HOM05D004355 ORTHO05D005228 4.5e-83 312.8 452 40.9
Nn2g11520 Nelumbo nucifera HOM05D004355 ORTHO05D005228 2.3e-79 300.4 235 67.2
Lj2P114T36 Lonicera japonica HOM05D004355 ORTHO05D005228 2.8e-77 293.5 263 58.2
CiPaw.09G174200 Carya illinoinensis HOM05D004355 ORTHO05D005228 1.4e-76 291.2 440 43.4
Lsat_1_v5_gn_6_31300 Lactuca sativa HOM05D004355 ORTHO05D005228 1.9e-70 270.8 448 37.1
Lsat_1_v5_gn_6_31200 Lactuca sativa HOM05D004355 ORTHO05D005228 3.4e-59 233.4 453 34.7
CDE06G0791 Ceratophyllum demersum HOM05D004355 ORTHO05D005228 4.2e-57 226.5 316 44.0
Lsat_1_v5_gn_6_70860 Lactuca sativa HOM05D004355 ORTHO05D005228 1.2e-56 224.9 412 34.7
CDE04G2254 Ceratophyllum demersum HOM05D004355 ORTHO05D005228 2.2e-53 214.2 307 44.0
Os10g0478400 Oryza sativa ssp. japonica HOM05D004355 ORTHO05D005228 6.9e-52 209.1 466 34.3
ATR0048G009 Amborella trichopoda HOM05D004355 ORTHO05D005228 1.1e-49 201.8 463 30.2
Zm00001eb221710 Zea mays HOM05D004355 ORTHO05D005228 1.4e-47 194.9 460 32.2
Zm00001eb045770 Zea mays HOM05D004355 ORTHO05D005228 6.3e-45 186.0 469 31.6
Actinidia31337 Actinidia chinensis HOM05D004355 ORTHO05D005228 4.7e-40 169.9 130 61.5
PSO801G0805 Papaver somniferum HOM05D004355 ORTHO05D005228 8.0e-40 169.1 228 48.2
Dinv34489 Davidia involucrata HOM05D004355 ORTHO05D005228 1.3e-37 161.8 218 45.0
ECA233G2161 Erigeron canadensis HOM05D004355 ORTHO05D005228 2.2e-37 161.0 449 30.5
ECA233G2931 Erigeron canadensis HOM05D004355 ORTHO05D005228 2.8e-37 160.6 212 38.2
Dinv23629 Davidia involucrata HOM05D004355 ORTHO05D005228 8.2e-37 159.1 218 45.0
VMungo0540G2091 Vigna mungo HOM05D004355 ORTHO05D005228 2.9e-34 150.6 117 64.1
FAN09G2758 Fragaria x ananassa HOM05D004355 ORTHO05D005228 4.4e-30 136.7 106 60.4
SEGI_02022 Sequoiadendron giganteum HOM05D004355 ORTHO05D005228 4.8e-29 133.3 197 36.0
ECA233G3839 Erigeron canadensis HOM05D004355 ORTHO05D005228 2.0e-27 127.9 236 32.6
FAN03G0487 Fragaria x ananassa HOM05D004355 ORTHO05D005228 1.1e-25 122.1 184 46.7
BcaB02g09308 Brassica carinata HOM05D004355 ORTHO05D005228 7.2e-25 119.4 152 46.1
SEGI_31737 Sequoiadendron giganteum HOM05D004355 ORTHO05D005228 1.2e-24 118.6 303 29.0
FAN05G3868 Fragaria x ananassa HOM05D004355 ORTHO05D005228 6.1e-24 116.3 156 49.4
Oeu045216.1 Olea europaea HOM05D004355 ORTHO05D005228 5.2e-23 113.2 440 25.5
Sc02g0001720 Simmondsia chinensis HOM05D004355 ORTHO05D005228 4.4e-22 110.2 99 55.6
FAN26G1787 Fragaria x ananassa HOM05D004355 ORTHO05D005228 4.8e-21 106.7 158 46.8
AL693U10010 Arabidopsis lyrata HOM05D004355 ORTHO05D005228 1.1e-20 105.5 129 50.4
Dinv15971 Davidia involucrata HOM05D004355 ORTHO05D005228 1.9e-17 94.7 119 46.2
Dinv18225 Davidia involucrata HOM05D004355 ORTHO05D005228 1.9e-17 94.7 119 46.2
HPP92_015190 Vanilla planifolia HOM05D004355 ORTHO05D005228 4.4e-14 83.6 109 42.2
Dinv07786 Davidia involucrata HOM05D004355 ORTHO05D005228 9.8e-14 82.4 79 53.2
FAN06G3154 Fragaria x ananassa HOM05D004355 ORTHO05D005228 4.1e-12 77.0 66 65.2
FAN06G2627 Fragaria x ananassa HOM05D004355 ORTHO05D005228 1.2e-11 75.5 68 63.2
FAN18G3656 Fragaria x ananassa HOM05D004355 ORTHO05D005228 1.2e-11 75.5 82 52.4
Oeu045215.1 Olea europaea HOM05D004355 ORTHO05D005228 4.5e-11 73.6 241 26.6
FAN05G5296 Fragaria x ananassa HOM05D004355 ORTHO05D005228 5.9e-11 73.2 68 60.3
Oeu045217.1 Olea europaea HOM05D004355 ORTHO05D005228 5.0e-10 70.1 238 28.6
Sabra12G0033900 Salix brachista HOM05D000239 ORTHO05D000484 5.2e-07 60.1 179 26.8


User provided reference genes

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