Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR369G0249 Trochodendron aralioides HOM05D000278 ORTHO05D414249 2.5e-74 282.0 136 100.0
TAR381G1107 Trochodendron aralioides HOM05D000278 ORTHO05D004794 5.0e-22 108.2 75 76.0
Thecc.01G126500 Theobroma cacao HOM05D000278 ORTHO05D004794 6.5e-22 107.8 75 76.0
Dinv32114 Davidia involucrata HOM05D000278 ORTHO05D004794 1.4e-21 106.7 71 78.9
Gohir.A11G230300 Gossypium hirsutum HOM05D000278 ORTHO05D004794 1.4e-21 106.7 75 76.0
Gohir.D11G229500 Gossypium hirsutum HOM05D000278 ORTHO05D004794 1.4e-21 106.7 75 76.0
Gorai.003G068300 Gossypium raimondii HOM05D000278 ORTHO05D004794 1.4e-21 106.7 75 76.0
Duzib147G1120 Durio zibethinus HOM05D000278 ORTHO05D004794 2.5e-21 105.9 75 74.7
Duzib187G1092 Durio zibethinus HOM05D000278 ORTHO05D004794 2.5e-21 105.9 75 74.7
Duzib264G0906 Durio zibethinus HOM05D000278 ORTHO05D004794 2.5e-21 105.9 75 74.7
Manes.11G109600 Manihot esculenta HOM05D000278 ORTHO05D004794 2.5e-21 105.9 75 74.7
COL.COLO4_14011 Corchorus olitorius HOM05D000278 ORTHO05D004794 3.2e-21 105.5 75 73.3
Potri.004G195300 Populus trichocarpa HOM05D000278 ORTHO05D004794 3.2e-21 105.5 71 76.1
Zm00001eb207780 Zea mays HOM05D000278 ORTHO05D004794 3.2e-21 105.5 71 76.1
arahy.Tifrunner.gnm1.ann1.H62ZJF Arachis hypogaea HOM05D000278 ORTHO05D004794 5.5e-21 104.8 71 76.1
VMungo0647G0629 Vigna mungo HOM05D000278 ORTHO05D004794 5.5e-21 104.8 71 76.1
GSVIVG01002278001 Vitis vinifera HOM05D000278 ORTHO05D004794 5.5e-21 104.8 71 76.1
Sabra04G0132500 Salix brachista HOM05D000278 ORTHO05D004794 7.2e-21 104.4 71 74.6
Aa31LG5G8530 Aethionema arabicum HOM05D000278 ORTHO05D004794 9.4e-21 104.0 71 74.6
MSTRG.11745 Avicennia marina HOM05D000278 ORTHO05D004794 9.4e-21 104.0 71 74.6
BcaB04g18663 Brassica carinata HOM05D000278 ORTHO05D004794 9.4e-21 104.0 71 74.6
Thhalv10020422m.g Eutrema salsugineum HOM05D000278 ORTHO05D004794 9.4e-21 104.0 71 74.6
Nn6g31931 Nelumbo nucifera HOM05D000278 ORTHO05D004794 9.4e-21 104.0 71 76.1
Nitab4.5_0003976g0060 Nicotiana tabacum HOM05D000278 ORTHO05D004794 9.4e-21 104.0 71 74.6
TWI31G0144 Tripterygium wilfordii HOM05D000278 ORTHO05D004794 9.4e-21 104.0 71 76.1
TAR625G0442 Trochodendron aralioides HOM05D000278 ORTHO05D004794 9.4e-21 104.0 75 72.0
ClCG03G014240 Citrullus lanatus HOM05D000278 ORTHO05D004794 1.2e-20 103.6 71 76.1
Haze_23638 Corylus avellana HOM05D000278 ORTHO05D004794 1.2e-20 103.6 71 76.1
Hma1.2p1_1466F.1_g285420 Hydrangea macrophylla HOM05D000278 ORTHO05D004794 1.2e-20 103.6 71 74.6
Sabra09G0123000 Salix brachista HOM05D000278 ORTHO05D004794 1.2e-20 103.6 71 76.1
Solyc06g065520.3 Solanum lycopersicum HOM05D000278 ORTHO05D004794 1.2e-20 103.6 71 74.6
Sopen06g024160 Solanum pennellii HOM05D000278 ORTHO05D004794 1.2e-20 103.6 71 74.6
PGSC0003DMG400026124 Solanum tuberosum HOM05D000278 ORTHO05D004794 1.2e-20 103.6 71 74.6
SGA_v2.0_scaffold4G02195 Striga asiatica HOM05D000278 ORTHO05D004794 1.2e-20 103.6 71 76.1
TWI75G0864 Tripterygium wilfordii HOM05D000278 ORTHO05D004794 1.2e-20 103.6 71 74.6
AL3G23390 Arabidopsis lyrata HOM05D000278 ORTHO05D004794 1.6e-20 103.2 71 74.6
AT3G11830 Arabidopsis thaliana HOM05D000278 ORTHO05D004794 1.6e-20 103.2 71 74.6
Cc11_g01300 Coffea canephora HOM05D000278 ORTHO05D004794 1.6e-20 103.2 71 74.6
unitig_26.g9787 Utricularia gibba HOM05D000278 ORTHO05D004794 1.6e-20 103.2 71 73.2
unitig_749.g13821 Utricularia gibba HOM05D000278 ORTHO05D004794 1.6e-20 103.2 71 73.2
CAN.G199.51 Capsicum annuum HOM05D000278 ORTHO05D004794 2.1e-20 102.8 68 76.5
DCAR_023796 Daucus carota HOM05D000278 ORTHO05D004794 2.1e-20 102.8 71 73.2
DCAR_027486 Daucus carota HOM05D000278 ORTHO05D004794 2.1e-20 102.8 71 73.2
Peaxi162Scf00275g00008 Petunia axillaris HOM05D000278 ORTHO05D004794 2.1e-20 102.8 73 71.2
CsaV3_1G041990 Cucumis sativus L. HOM05D000278 ORTHO05D004794 2.7e-20 102.4 71 74.6
Gohir.A12G001300 Gossypium hirsutum HOM05D000278 ORTHO05D004794 2.7e-20 102.4 71 74.6
Gorai.008G000400 Gossypium raimondii HOM05D000278 ORTHO05D004794 2.7e-20 102.4 71 74.6
MBI08_g21308_MAGBIO Magnolia biondii HOM05D000278 ORTHO05D004794 2.7e-20 102.4 75 73.3
Potri.009G157400 Populus trichocarpa HOM05D000278 ORTHO05D004794 2.7e-20 102.4 71 74.6
HPP92_007029 Vanilla planifolia HOM05D000278 ORTHO05D004794 2.7e-20 102.4 71 73.2
Aa31LG3G5320 Aethionema arabicum HOM05D000278 ORTHO05D004794 3.6e-20 102.1 71 74.6
Aqoxy6G02051 Aquilegia oxysepala HOM05D000278 ORTHO05D004794 3.6e-20 102.1 71 73.2
BcaB04g21115 Brassica carinata HOM05D000278 ORTHO05D004794 3.6e-20 102.1 71 73.2
BcaB06g25572 Brassica carinata HOM05D000278 ORTHO05D004794 3.6e-20 102.1 71 73.2
BcaC01g04077 Brassica carinata HOM05D000278 ORTHO05D004794 3.6e-20 102.1 71 73.2
BcaC05g29321 Brassica carinata HOM05D000278 ORTHO05D004794 3.6e-20 102.1 71 73.2
BcaC09g48192 Brassica carinata HOM05D000278 ORTHO05D004794 3.6e-20 102.1 71 73.2
A05p37520 Brassica napus HOM05D000278 ORTHO05D004794 3.6e-20 102.1 71 73.2
C05p56080 Brassica napus HOM05D000278 ORTHO05D004794 3.6e-20 102.1 71 73.2
BolC5t34275H Brassica oleracea HOM05D000278 ORTHO05D004794 3.6e-20 102.1 71 73.2
BraA01t04158Z Brassica rapa HOM05D000278 ORTHO05D004794 3.6e-20 102.1 71 73.2
BraA05t22550Z Brassica rapa HOM05D000278 ORTHO05D004794 3.6e-20 102.1 71 73.2
SGA_v2.0_scaffold169G38626 Striga asiatica HOM05D000278 ORTHO05D004794 3.6e-20 102.1 71 76.1
THA.LOC104816967 Tarenaya hassleriana HOM05D000278 ORTHO05D004794 3.6e-20 102.1 71 76.1
THA.LOC104826479 Tarenaya hassleriana HOM05D000278 ORTHO05D004794 3.6e-20 102.1 71 76.1
Medtr5g087560 Medicago truncatula HOM05D000278 ORTHO05D004794 4.6e-20 101.7 71 73.2
Nitab4.5_0005873g0040 Nicotiana tabacum HOM05D000278 ORTHO05D004794 4.6e-20 101.7 71 71.8
A03p37310 Brassica napus HOM05D000278 ORTHO05D004794 6.1e-20 101.3 71 71.8
BraA03t12891Z Brassica rapa HOM05D000278 ORTHO05D004794 6.1e-20 101.3 71 71.8
Carub.0003s1118 Capsella rubella HOM05D000278 ORTHO05D004794 6.1e-20 101.3 71 73.2
CARHR086380 Cardamine hirsuta HOM05D000278 ORTHO05D004794 6.1e-20 101.3 71 71.8
Dinv32841 Davidia involucrata HOM05D000278 ORTHO05D004794 6.1e-20 101.3 71 73.2
Eucgr.J00618 Eucalyptus grandis HOM05D000278 ORTHO05D004794 6.1e-20 101.3 71 74.6
Gohir.D12G001100 Gossypium hirsutum HOM05D000278 ORTHO05D004794 6.1e-20 101.3 71 74.6
LjContig00564g0022207 Lotus japonicus HOM05D000278 ORTHO05D004794 6.1e-20 101.3 71 71.8
PGR119G0569 Punica granatum HOM05D000278 ORTHO05D004794 6.1e-20 101.3 71 74.6
QL01p020501 Quercus lobata HOM05D000278 ORTHO05D004794 6.1e-20 101.3 71 71.8
Actinidia06356 Actinidia chinensis HOM05D000278 ORTHO05D004794 7.9e-20 100.9 71 76.1
Actinidia22468 Actinidia chinensis HOM05D000278 ORTHO05D004794 7.9e-20 100.9 71 76.1
Cpa.g.sc103.86 Carica papaya HOM05D000278 ORTHO05D004794 7.9e-20 100.9 71 73.2
HanXRQChr15g0468701 Helianthus annuus HOM05D000278 ORTHO05D004794 7.9e-20 100.9 71 71.8
Lj2A907T33 Lonicera japonica HOM05D000278 ORTHO05D004794 7.9e-20 100.9 71 71.8
Psat0s921g0240 Pisum sativum HOM05D000278 ORTHO05D004794 7.9e-20 100.9 71 73.2
SalBow8G4259 Salvia bowleyana HOM05D000278 ORTHO05D004794 7.9e-20 100.9 71 73.2
SalBow8G4293 Salvia bowleyana HOM05D000278 ORTHO05D004794 7.9e-20 100.9 71 73.2
ECA238G3358 Erigeron canadensis HOM05D000278 ORTHO05D004794 1.0e-19 100.5 71 70.4
Lsat_1_v5_gn_5_64940 Lactuca sativa HOM05D000278 ORTHO05D004794 1.0e-19 100.5 71 71.8
Phvul.008G208800 Phaseolus vulgaris HOM05D000278 ORTHO05D004794 1.0e-19 100.5 71 73.2
Hund02336 Selenicereus undatus HOM05D000278 ORTHO05D004794 1.0e-19 100.5 71 71.8
C03p45300 Brassica napus HOM05D000278 ORTHO05D004794 1.4e-19 100.1 71 71.8
BolC1t05287H Brassica oleracea HOM05D000278 ORTHO05D004794 1.4e-19 100.1 71 71.8
BolC3t16793H Brassica oleracea HOM05D000278 ORTHO05D004794 1.4e-19 100.1 71 71.8
Migut.E01490 Erythranthe guttata HOM05D000278 ORTHO05D004794 1.4e-19 100.1 71 73.2
Lalb_Chr10g0105841 Lupinus albus HOM05D000278 ORTHO05D004794 1.4e-19 100.1 71 76.1
Peaxi162Scf00038g02039 Petunia axillaris HOM05D000278 ORTHO05D004794 1.4e-19 100.1 71 71.8
Prupe.6G154400 Prunus persica HOM05D000278 ORTHO05D004794 1.4e-19 100.1 71 71.8
TPR.G11653 Trifolium pratense HOM05D000278 ORTHO05D004794 1.4e-19 100.1 71 71.8
HanXRQChr12g0378161 Helianthus annuus HOM05D000278 ORTHO05D004794 1.8e-19 99.8 71 71.8
MD03G1164100 Malus domestica HOM05D000278 ORTHO05D004794 1.8e-19 99.8 71 70.4
Ah.04g164010 Amaranthus hybridus HOM05D000278 ORTHO05D004794 2.3e-19 99.4 71 70.4
ATR0661G304 Amborella trichopoda HOM05D000278 ORTHO05D004794 2.3e-19 99.4 71 73.2
CiPaw.14G092200 Carya illinoinensis HOM05D000278 ORTHO05D004794 2.3e-19 99.4 71 70.4
Migut.A00285 Erythranthe guttata HOM05D000278 ORTHO05D004794 2.3e-19 99.4 71 71.8
PSO541G3784 Papaver somniferum HOM05D000278 ORTHO05D004794 2.3e-19 99.4 71 71.8
PSO675G7679 Papaver somniferum HOM05D000278 ORTHO05D004794 2.3e-19 99.4 71 71.8
Sed0019588 Sechium edule HOM05D000278 ORTHO05D004794 2.3e-19 99.4 71 71.8
ATR0099G017 Amborella trichopoda HOM05D000278 ORTHO05D004794 3.0e-19 99.0 92 57.6
CSS0017916 Camellia sinensis var. sinensis HOM05D000278 ORTHO05D004794 3.0e-19 99.0 71 73.2
Glyma.14G043400 Glycine max HOM05D000278 ORTHO05D004794 3.0e-19 99.0 71 70.4
Lalb_Chr04g0249751 Lupinus albus HOM05D000278 ORTHO05D004794 3.0e-19 99.0 71 73.2
Sc03g0004270 Simmondsia chinensis HOM05D000278 ORTHO05D004794 3.0e-19 99.0 71 70.4
vmacro08485 Vaccinium macrocarpon HOM05D000278 ORTHO05D004794 3.0e-19 99.0 71 73.2
Glyma.02G273200 Glycine max HOM05D000278 ORTHO05D004794 6.7e-19 97.8 71 69.0
CSS0003568 Camellia sinensis var. sinensis HOM05D000278 ORTHO05D004794 8.8e-19 97.4 68 75.0
Sed0013756 Sechium edule HOM05D000278 ORTHO05D004794 8.8e-19 97.4 71 70.4
MELO3C015615.2 Cucumis melo HOM05D000278 ORTHO05D004794 1.1e-18 97.1 67 74.6
CANSAT35G1978 Cannabis sativa HOM05D000278 ORTHO05D004794 1.5e-18 96.7 71 69.0
Rhsim05G0064500 Rhododendron simsii HOM05D000278 ORTHO05D004794 2.5e-18 95.9 71 69.0
CDE06G0515 Ceratophyllum demersum HOM05D000278 ORTHO05D004794 3.3e-18 95.5 72 65.3
AUR62013959 Chenopodium quinoa HOM05D000278 ORTHO05D004794 3.3e-18 95.5 71 67.6
AUR62019654 Chenopodium quinoa HOM05D000278 ORTHO05D004794 3.3e-18 95.5 71 67.6
SHI25343 Sapria himalayana HOM05D000278 ORTHO05D004794 4.3e-18 95.1 70 70.0
RcHm_v2.0_Chr5g0049871 Rosa chinensis HOM05D000278 ORTHO05D004794 5.7e-18 94.7 71 67.6
RcHm_v2.0_Chr2g0128841 Rosa chinensis HOM05D000278 ORTHO05D004794 7.4e-18 94.4 71 67.6
Ciclev10014771m.g Citrus clementina HOM05D000278 ORTHO05D004794 1.7e-17 93.2 72 69.4
EL10Ac4g08419 Beta vulgaris HOM05D000278 ORTHO05D004794 2.2e-17 92.8 71 67.6
CDE02G3738 Ceratophyllum demersum HOM05D000278 ORTHO05D004794 2.2e-17 92.8 71 63.4
FvH4_3g27240 Fragaria vesca HOM05D000278 ORTHO05D004794 3.7e-17 92.0 71 67.6
FAN11G3227 Fragaria x ananassa HOM05D000278 ORTHO05D004794 3.7e-17 92.0 71 67.6
FAN16G1090 Fragaria x ananassa HOM05D000278 ORTHO05D004794 3.7e-17 92.0 71 67.6
FAN25G3467 Fragaria x ananassa HOM05D000278 ORTHO05D004794 3.7e-17 92.0 71 67.6
ATR0638G001 Amborella trichopoda HOM05D000278 ORTHO05D004794 6.3e-17 91.3 68 69.1
AagrBONN_evm.TU.Sc2ySwM_117.2607 Anthoceros agrestis HOM05D000278 ORTHO05D004794 1.1e-16 90.5 71 63.4
Mapoly0156s0015 Marchantia polymorpha HOM05D000278 ORTHO05D004794 2.4e-16 89.4 71 62.0
Pp3c9_14010 Physcomitrium patens HOM05D000278 ORTHO05D004794 2.4e-16 89.4 70 61.4
ATR0099G056 Amborella trichopoda HOM05D000278 ORTHO05D004794 4.1e-16 88.6 64 70.3
ATR1195G001 Amborella trichopoda HOM05D000278 ORTHO05D004794 4.1e-16 88.6 64 70.3
ATR0099G041 Amborella trichopoda HOM05D000278 ORTHO05D004794 7.7e-15 84.3 68 63.2
Pp3c15_8230 Physcomitrium patens HOM05D000278 ORTHO05D004794 1.0e-14 84.0 70 57.1
Atru.chr3.2917 Acer truncatum HOM05D000278 ORTHO05D004794 2.2e-14 82.8 56 76.8
SMO347G0357 Selaginella moellendorffii HOM05D000278 ORTHO05D004794 2.2e-14 82.8 71 57.7
ATR0099G014 Amborella trichopoda HOM05D000278 ORTHO05D004794 2.5e-13 79.3 58 69.0
FAN16G3564 Fragaria x ananassa HOM05D000278 ORTHO05D004794 3.2e-13 79.0 58 70.7
ATR0408G001 Amborella trichopoda HOM05D000278 ORTHO05D004794 5.5e-13 78.2 58 65.5
CBR_g42151 Chara braunii HOM05D000278 ORTHO05D004794 3.6e-12 75.5 71 49.3
TAR628G0924 Trochodendron aralioides HOM05D000278 ORTHO05D004794 1.5e-10 70.1 75 57.3
MCO06G165 Micromonas commoda HOM05D000278 ORTHO05D004794 2.0e-10 69.7 58 56.9
Cre01.g026550 Chlamydomonas reinhardtii HOM05D000278 ORTHO05D004794 1.7e-09 66.6 72 47.2
PRCOL_00005497 Prasinoderma coloniale HOM05D000278 ORTHO05D004794 2.8e-09 65.9 72 52.8
A03p01780 Brassica napus HOM05D000278 ORTHO05D004794 1.3e-06 57.0 41 68.3
BraA04t18261Z Brassica rapa HOM05D000278 ORTHO05D004794 1.3e-06 57.0 41 68.3
HPP92_007072 Vanilla planifolia HOM05D000278 ORTHO05D004794 1.3e-06 57.0 93 39.8


User provided reference genes

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