Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR369G0232 Trochodendron aralioides HOM05D006815 ORTHO05D008536 3.6e-205 718.0 356 100.0
Dinv24040 Davidia involucrata HOM05D006815 ORTHO05D008536 2.7e-88 329.7 214 75.2
Nn2g15741 Nelumbo nucifera HOM05D006815 ORTHO05D008536 1.7e-85 320.5 220 73.2
Actinidia22067 Actinidia chinensis HOM05D006815 ORTHO05D008536 2.4e-84 316.6 210 71.9
TWI53G1298 Tripterygium wilfordii HOM05D006815 ORTHO05D008536 7.7e-83 311.6 212 68.9
MELO3C009608.2 Cucumis melo HOM05D006815 ORTHO05D008536 5.0e-82 308.9 212 69.3
Atru.chr8.1155 Acer truncatum HOM05D006815 ORTHO05D008536 8.5e-82 308.1 214 70.1
Cpa.g.sc9.26 Carica papaya HOM05D006815 ORTHO05D008536 9.4e-81 304.7 209 71.3
CsaV3_3G038620 Cucumis sativus L. HOM05D006815 ORTHO05D008536 9.4e-81 304.7 208 69.2
Haze_20020 Corylus avellana HOM05D006815 ORTHO05D008536 1.2e-80 304.3 209 69.4
Haze_20023 Corylus avellana HOM05D006815 ORTHO05D008536 1.2e-80 304.3 209 69.4
CiPaw.09G028400 Carya illinoinensis HOM05D006815 ORTHO05D008536 1.6e-80 303.9 209 69.4
Duzib106G1458 Durio zibethinus HOM05D006815 ORTHO05D008536 2.1e-80 303.5 208 72.1
Peaxi162Scf00463g00417 Petunia axillaris HOM05D006815 ORTHO05D008536 2.1e-80 303.5 213 68.1
Cc06_g15510 Coffea canephora HOM05D006815 ORTHO05D008536 2.7e-80 303.1 213 66.2
Thecc.05G174900 Theobroma cacao HOM05D006815 ORTHO05D008536 2.7e-80 303.1 208 70.7
Sed0026757 Sechium edule HOM05D006815 ORTHO05D008536 6.1e-80 302.0 206 69.4
Cfa020143 Carpinus fangiana HOM05D006815 ORTHO05D008536 1.4e-79 300.8 209 68.9
Ciclev10012299m.g Citrus clementina HOM05D006815 ORTHO05D008536 2.3e-79 300.1 216 70.4
GSVIVG01033467001 Vitis vinifera HOM05D006815 ORTHO05D008536 5.2e-79 298.9 197 74.6
QL07p024496 Quercus lobata HOM05D006815 ORTHO05D008536 1.5e-78 297.4 214 69.6
RcHm_v2.0_Chr3g0479231 Rosa chinensis HOM05D006815 ORTHO05D008536 3.4e-78 296.2 225 68.0
COL.COLO4_29358 Corchorus olitorius HOM05D006815 ORTHO05D008536 4.4e-78 295.8 203 70.4
Gohir.D01G124800 Gossypium hirsutum HOM05D006815 ORTHO05D008536 4.4e-78 295.8 202 70.8
Sabra06G0149300 Salix brachista HOM05D006815 ORTHO05D008536 7.5e-78 295.0 207 69.1
Gohir.A01G137200 Gossypium hirsutum HOM05D006815 ORTHO05D008536 1.7e-77 293.9 202 70.8
Potri.006G194600 Populus trichocarpa HOM05D006815 ORTHO05D008536 1.7e-77 293.9 207 69.1
ClCG10G017680 Citrullus lanatus HOM05D006815 ORTHO05D008536 2.2e-77 293.5 207 67.6
Gorai.002G155400 Gossypium raimondii HOM05D006815 ORTHO05D008536 2.2e-77 293.5 202 70.3
Rhsim03G0035800 Rhododendron simsii HOM05D006815 ORTHO05D008536 2.8e-77 293.1 205 70.2
AUR62015334 Chenopodium quinoa HOM05D006815 ORTHO05D008536 8.3e-77 291.6 210 67.6
PSO541G3114 Papaver somniferum HOM05D006815 ORTHO05D008536 8.3e-77 291.6 226 63.3
PSO675G7684 Papaver somniferum HOM05D006815 ORTHO05D008536 8.3e-77 291.6 226 63.3
Eucgr.A02470 Eucalyptus grandis HOM05D006815 ORTHO05D008536 1.1e-76 291.2 202 69.8
Manes.08G042600 Manihot esculenta HOM05D006815 ORTHO05D008536 1.1e-76 291.2 209 67.9
MD14G1054000 Malus domestica HOM05D006815 ORTHO05D008536 1.4e-76 290.8 206 69.9
Oeu035701.1 Olea europaea HOM05D006815 ORTHO05D008536 1.4e-76 290.8 212 65.6
Prupe.7G081100 Prunus persica HOM05D006815 ORTHO05D008536 2.4e-76 290.0 206 69.4
PGSC0003DMG400001108 Solanum tuberosum HOM05D006815 ORTHO05D008536 7.0e-76 288.5 212 64.2
Aqoxy2G00089 Aquilegia oxysepala HOM05D006815 ORTHO05D008536 1.2e-75 287.7 212 66.5
AUR62012005 Chenopodium quinoa HOM05D006815 ORTHO05D008536 1.2e-75 287.7 210 66.7
FvH4_6g21880 Fragaria vesca HOM05D006815 ORTHO05D008536 1.2e-75 287.7 225 66.2
FAN14G3951 Fragaria x ananassa HOM05D006815 ORTHO05D008536 1.2e-75 287.7 225 66.2
CAN.G1314.3 Capsicum annuum HOM05D006815 ORTHO05D008536 2.7e-75 286.6 212 63.7
Migut.J01868 Erythranthe guttata HOM05D006815 ORTHO05D008536 2.7e-75 286.6 208 65.4
FAN02G2829 Fragaria x ananassa HOM05D006815 ORTHO05D008536 3.5e-75 286.2 225 65.8
HanXRQChr01g0024541 Helianthus annuus HOM05D006815 ORTHO05D008536 3.5e-75 286.2 207 64.3
Lsat_1_v5_gn_1_60941 Lactuca sativa HOM05D006815 ORTHO05D008536 7.7e-75 285.0 208 64.4
DCAR_013671 Daucus carota HOM05D006815 ORTHO05D008536 1.3e-74 284.3 221 64.7
FAN09G4209 Fragaria x ananassa HOM05D006815 ORTHO05D008536 6.6e-74 282.0 219 65.3
MSTRG.6498 Avicennia marina HOM05D006815 ORTHO05D008536 1.1e-73 281.2 208 64.4
Sopen03g011500 Solanum pennellii HOM05D006815 ORTHO05D008536 1.9e-73 280.4 212 61.8
Thhalv10017089m.g Eutrema salsugineum HOM05D006815 ORTHO05D008536 3.3e-73 279.6 218 64.2
Lj2C363G3 Lonicera japonica HOM05D006815 ORTHO05D008536 3.3e-73 279.6 206 65.0
EL10Ac3g06884 Beta vulgaris HOM05D006815 ORTHO05D008536 4.3e-73 279.3 208 63.9
CANSAT64G2825 Cannabis sativa HOM05D006815 ORTHO05D008536 5.6e-73 278.9 213 63.4
Solyc03g053020.4 Solanum lycopersicum HOM05D006815 ORTHO05D008536 5.6e-73 278.9 212 61.8
Sp4g24220 Schrenkiella parvula HOM05D006815 ORTHO05D008536 1.2e-72 277.7 218 63.3
CSS0043811 Camellia sinensis var. sinensis HOM05D006815 ORTHO05D008536 3.6e-72 276.2 204 70.6
PGR004G0977 Punica granatum HOM05D006815 ORTHO05D008536 8.0e-72 275.0 212 62.7
CSS0019995 Camellia sinensis var. sinensis HOM05D006815 ORTHO05D008536 1.0e-71 274.6 204 70.1
ECA248G0678 Erigeron canadensis HOM05D006815 ORTHO05D008536 1.4e-71 274.2 219 61.2
Nitab4.5_0000009g0210 Nicotiana tabacum HOM05D006815 ORTHO05D008536 2.3e-71 273.5 214 61.7
THA.LOC104824483 Tarenaya hassleriana HOM05D006815 ORTHO05D008536 3.0e-71 273.1 208 64.4
Lalb_Chr15g0079111 Lupinus albus HOM05D006815 ORTHO05D008536 6.8e-71 271.9 208 61.5
AT2G41950 Arabidopsis thaliana HOM05D006815 ORTHO05D008536 1.5e-70 270.8 221 61.1
SGA_v2.0_scaffold57G20097 Striga asiatica HOM05D006815 ORTHO05D008536 2.0e-70 270.4 215 61.4
vmacro22625 Vaccinium macrocarpon HOM05D006815 ORTHO05D008536 2.6e-70 270.0 217 62.2
A05p02650 Brassica napus HOM05D006815 ORTHO05D008536 4.4e-70 269.2 221 60.2
BraA05t19258Z Brassica rapa HOM05D006815 ORTHO05D008536 4.4e-70 269.2 221 60.2
BcaC02g12449 Brassica carinata HOM05D006815 ORTHO05D008536 9.8e-70 268.1 221 60.2
C04p03160 Brassica napus HOM05D006815 ORTHO05D008536 9.8e-70 268.1 221 60.2
BolC4t21956H Brassica oleracea HOM05D006815 ORTHO05D008536 9.8e-70 268.1 221 60.2
AL4G40310 Arabidopsis lyrata HOM05D006815 ORTHO05D008536 1.7e-69 267.3 221 61.1
Nitab4.5_0002339g0010 Nicotiana tabacum HOM05D006815 ORTHO05D008536 3.7e-69 266.2 214 60.7
Aa31LG1G24180 Aethionema arabicum HOM05D006815 ORTHO05D008536 1.4e-68 264.2 226 59.7
Hund19213 Selenicereus undatus HOM05D006815 ORTHO05D008536 4.1e-68 262.7 200 62.0
SalBow6G3515 Salvia bowleyana HOM05D006815 ORTHO05D008536 5.4e-68 262.3 215 59.1
Carub.0004s2428 Capsella rubella HOM05D006815 ORTHO05D008536 1.6e-67 260.8 208 61.1
arahy.Tifrunner.gnm1.ann1.8HEC25 Arachis hypogaea HOM05D006815 ORTHO05D008536 2.0e-67 260.4 208 61.1
arahy.Tifrunner.gnm1.ann1.G1RGZB Arachis hypogaea HOM05D006815 ORTHO05D008536 1.0e-66 258.1 221 57.5
arahy.Tifrunner.gnm1.ann1.TZP9CN Arachis hypogaea HOM05D006815 ORTHO05D008536 1.3e-66 257.7 208 61.1
MBI19_g17427_MAGBIO Magnolia biondii HOM05D006815 ORTHO05D008536 9.5e-65 251.5 222 58.1
Phvul.001G144400 Phaseolus vulgaris HOM05D006815 ORTHO05D008536 1.2e-64 251.1 212 59.9
VMungo1383G0507 Vigna mungo HOM05D006815 ORTHO05D008536 1.8e-63 247.3 215 58.1
Glyma.19G149900 Glycine max HOM05D006815 ORTHO05D008536 4.0e-63 246.1 208 57.7
Lj1g0024455 Lotus japonicus HOM05D006815 ORTHO05D008536 5.2e-63 245.7 212 56.1
Glyma.03G146600 Glycine max HOM05D006815 ORTHO05D008536 8.9e-63 245.0 208 57.7
Psat3g067520 Pisum sativum HOM05D006815 ORTHO05D008536 3.4e-62 243.0 198 60.1
Medtr7g093640 Medicago truncatula HOM05D006815 ORTHO05D008536 4.4e-62 242.7 217 55.3
TPR.G13363 Trifolium pratense HOM05D006815 ORTHO05D008536 4.9e-61 239.2 210 57.1
Ca_08540_v3 Cicer arietinum L. HOM05D006815 ORTHO05D008536 2.4e-60 236.9 211 56.4
unitig_37.g12377 Utricularia gibba HOM05D006815 ORTHO05D008536 7.0e-60 235.3 201 56.2
CDE05G2500 Ceratophyllum demersum HOM05D006815 ORTHO05D008536 1.3e-58 231.1 217 56.2
ATR0598G218 Amborella trichopoda HOM05D006815 ORTHO05D008536 8.6e-58 228.4 192 58.3
arahy.Tifrunner.gnm1.ann1.70NGGP Arachis hypogaea HOM05D006815 ORTHO05D008536 1.5e-57 227.6 200 57.5
HPP92_023474 Vanilla planifolia HOM05D006815 ORTHO05D008536 8.9e-55 218.4 219 51.6
HPP92_023458 Vanilla planifolia HOM05D006815 ORTHO05D008536 9.8e-54 214.9 211 52.6
Sc13g0002390 Simmondsia chinensis HOM05D006815 ORTHO05D008536 1.0e-50 204.9 155 62.6
arahy.Tifrunner.gnm1.ann1.13XKQP Arachis hypogaea HOM05D006815 ORTHO05D008536 4.3e-49 199.5 208 52.4
CARHR137070 Cardamine hirsuta HOM05D006815 ORTHO05D008536 1.5e-46 191.0 157 61.8
MD12G1054600 Malus domestica HOM05D006815 ORTHO05D008536 3.7e-45 186.4 150 62.7
CAN.G274.29 Capsicum annuum HOM05D006815 ORTHO05D008536 7.1e-44 182.2 150 58.7
SEGI_30907 Sequoiadendron giganteum HOM05D006815 ORTHO05D008536 1.7e-34 151.0 203 40.4
Os03g0226700 Oryza sativa ssp. japonica HOM05D006815 ORTHO05D008536 6.6e-34 149.1 200 41.0
CDE11G0339 Ceratophyllum demersum HOM05D006815 ORTHO05D008536 8.1e-32 142.1 162 50.0
BcaC03g14280 Brassica carinata HOM05D006815 ORTHO05D008536 5.6e-25 119.4 189 41.3
Nn6g34990 Nelumbo nucifera HOM05D006815 ORTHO05D008536 4.0e-23 113.2 69 78.3
TAR376G0703 Trochodendron aralioides HOM05D002716 ORTHO05D003324 5.8e-22 109.4 53 94.3
Pp3c12_7730 Physcomitrium patens HOM05D006815 ORTHO05D008536 2.7e-19 100.5 255 27.8
CARHR137080 Cardamine hirsuta HOM05D006815 ORTHO05D008536 1.0e-18 98.6 72 63.9
Mapoly0159s0012 Marchantia polymorpha HOM05D006815 ORTHO05D008536 1.1e-17 95.1 184 30.4
arahy.Tifrunner.gnm1.ann1.19RU7Q Arachis hypogaea HOM05D006815 ORTHO05D008536 3.3e-17 93.6 75 56.0
SEGI_06955 Sequoiadendron giganteum HOM05D006815 ORTHO05D008536 3.3e-17 93.6 142 38.0
Zm00001eb009870 Zea mays HOM05D006815 ORTHO05D008536 2.1e-16 90.9 148 36.5
C02p16600 Brassica napus HOM05D006815 ORTHO05D008536 3.2e-12 77.0 68 60.3
BolC2t07761H Brassica oleracea HOM05D006815 ORTHO05D008536 3.2e-12 77.0 68 60.3
TAR381G0941 Trochodendron aralioides HOM05D000021 ORTHO05D000010 7.1e-12 75.9 49 75.5
TAR622G0023 Trochodendron aralioides HOM05D000021 ORTHO05D000010 4.6e-11 73.2 50 76.0
Nn3g21845 Nelumbo nucifera HOM05D006815 ORTHO05D008536 8.7e-10 68.9 42 81.0
Dinv35910 Davidia involucrata HOM05D000021 ORTHO05D000010 1.5e-09 68.2 48 64.6
Prupe.1G427700 Prunus persica HOM05D000021 ORTHO05D000010 4.3e-09 66.6 49 65.3
CSS0037605 Camellia sinensis var. sinensis HOM05D000021 ORTHO05D000010 1.6e-08 64.7 45 66.7
QL02p003154 Quercus lobata HOM05D000021 ORTHO05D000010 2.1e-08 64.3 49 61.2
MD15G1074900 Malus domestica HOM05D000021 ORTHO05D000010 4.8e-08 63.2 49 67.3
Actinidia10174 Actinidia chinensis HOM05D000021 ORTHO05D000010 1.1e-07 62.0 45 66.7
Prupe.1G427400 Prunus persica HOM05D000021 ORTHO05D000010 1.1e-07 62.0 49 63.3
QL02p002923 Quercus lobata HOM05D000021 ORTHO05D000010 1.1e-07 62.0 46 60.9
QL02p003134 Quercus lobata HOM05D000021 ORTHO05D000010 1.1e-07 62.0 46 60.9
Nn1g09086 Nelumbo nucifera HOM05D000021 ORTHO05D000010 1.8e-07 61.2 49 61.2
QL02p002998 Quercus lobata HOM05D000021 ORTHO05D000010 1.8e-07 61.2 49 59.2
QL03p022844 Quercus lobata HOM05D000021 ORTHO05D000010 1.8e-07 61.2 49 59.2
GSVIVG01009394001 Vitis vinifera HOM05D000021 ORTHO05D000010 1.8e-07 61.2 48 60.4
Actinidia22668 Actinidia chinensis HOM05D000021 ORTHO05D000010 3.1e-07 60.5 45 62.2
CiPaw.15G048800 Carya illinoinensis HOM05D000021 ORTHO05D000010 3.1e-07 60.5 48 60.4
FvH4_3g36850 Fragaria vesca HOM05D000021 ORTHO05D000010 3.1e-07 60.5 50 64.0
FAN11G1897 Fragaria x ananassa HOM05D000021 ORTHO05D000010 3.1e-07 60.5 50 64.0
FAN16G2947 Fragaria x ananassa HOM05D000021 ORTHO05D000010 3.1e-07 60.5 50 64.0
FAN21G1122 Fragaria x ananassa HOM05D000021 ORTHO05D000010 3.1e-07 60.5 50 64.0
RcHm_v2.0_Chr5g0066001 Rosa chinensis HOM05D000021 ORTHO05D000010 3.1e-07 60.5 50 64.0
Hma1.2p1_0240F.1_g100100 Hydrangea macrophylla HOM05D000021 ORTHO05D000010 4.1e-07 60.1 47 61.7
Hma1.2p1_0923F.1_g237160 Hydrangea macrophylla HOM05D000021 ORTHO05D000010 4.1e-07 60.1 48 64.6
Aqoxy1G03446 Aquilegia oxysepala HOM05D000021 ORTHO05D000010 5.3e-07 59.7 49 59.2
CiPaw.15G049000 Carya illinoinensis HOM05D000021 ORTHO05D000010 5.3e-07 59.7 48 58.3
ClCG08G016290 Citrullus lanatus HOM05D000021 ORTHO05D000010 5.3e-07 59.7 45 62.2
MD08G1090900 Malus domestica HOM05D000021 ORTHO05D000010 5.3e-07 59.7 49 63.3
Nn1g04225 Nelumbo nucifera HOM05D000021 ORTHO05D000010 5.3e-07 59.7 49 57.1
Nn1g04385 Nelumbo nucifera HOM05D000021 ORTHO05D000010 5.3e-07 59.7 105 36.2
ClCG08G016270 Citrullus lanatus HOM05D000021 ORTHO05D000010 6.9e-07 59.3 74 41.9
MD15G1075000 Malus domestica HOM05D000021 ORTHO05D000010 9.0e-07 58.9 49 57.1
TWI56G0751 Tripterygium wilfordii HOM05D000021 ORTHO05D000010 9.0e-07 58.9 49 59.2
Atru.chr2.979 Acer truncatum HOM05D000021 ORTHO05D000010 1.5e-06 58.2 44 65.9
FAN25G3521 Fragaria x ananassa HOM05D000021 ORTHO05D000010 1.5e-06 58.2 48 64.6
TWI56G0182 Tripterygium wilfordii HOM05D000021 ORTHO05D000010 1.5e-06 58.2 49 59.2
TWI56G0871 Tripterygium wilfordii HOM05D000021 ORTHO05D000010 1.5e-06 58.2 49 59.2
vmacro21467 Vaccinium macrocarpon HOM05D000021 ORTHO05D000010 1.5e-06 58.2 45 62.2
Ciclev10014130m.g Citrus clementina HOM05D000021 ORTHO05D000010 2.0e-06 57.8 44 65.9
Prupe.1G427800 Prunus persica HOM05D000021 ORTHO05D000010 2.6e-06 57.4 45 62.2
CiPaw.15G048900 Carya illinoinensis HOM05D000021 ORTHO05D000010 3.4e-06 57.0 48 56.2
MELO3C010825.2 Cucumis melo HOM05D000021 ORTHO05D000010 4.5e-06 56.6 45 60.0
Peaxi162Scf00683g00460 Petunia axillaris HOM05D000021 ORTHO05D000010 4.5e-06 56.6 45 60.0
Manes.11G156900 Manihot esculenta HOM05D000021 ORTHO05D000010 5.9e-06 56.2 49 57.1
CsaV3_2G026320 Cucumis sativus L. HOM05D000021 ORTHO05D000010 7.6e-06 55.8 45 60.0
Nn1g04224 Nelumbo nucifera HOM05D000021 ORTHO05D000010 7.6e-06 55.8 49 55.1
Aqoxy1G00868 Aquilegia oxysepala HOM05D000021 ORTHO05D000010 1.0e-05 55.5 48 50.0
PSO447G0162 Papaver somniferum HOM05D000021 ORTHO05D000010 1.0e-05 55.5 73 43.8


User provided reference genes

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