Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR369G0231 Trochodendron aralioides HOM05D004539 ORTHO05D005482 1.4e-114 416.4 218 100.0
TAR629G0090 Trochodendron aralioides HOM05D004539 ORTHO05D005482 2.5e-23 113.2 99 59.6
Actinidia29798 Actinidia chinensis HOM05D004539 ORTHO05D005482 2.7e-22 109.8 99 54.5
Hma1.2p1_0773F.1_g216150 Hydrangea macrophylla HOM05D004539 ORTHO05D005482 3.0e-21 106.3 89 64.0
Dinv31810 Davidia involucrata HOM05D004539 ORTHO05D005482 5.2e-21 105.5 94 57.4
Rhsim06G0026400 Rhododendron simsii HOM05D004539 ORTHO05D005482 5.2e-21 105.5 99 55.6
Manes.05G152500 Manihot esculenta HOM05D004539 ORTHO05D005482 8.8e-21 104.8 94 58.5
PGSC0003DMG400003712 Solanum tuberosum HOM05D004539 ORTHO05D005482 2.6e-20 103.2 101 51.5
Thecc.04G277100 Theobroma cacao HOM05D004539 ORTHO05D005482 4.4e-20 102.4 98 51.0
vmacro21700 Vaccinium macrocarpon HOM05D004539 ORTHO05D005482 4.4e-20 102.4 99 54.5
Atru.chr13.359 Acer truncatum HOM05D004539 ORTHO05D005482 7.4e-20 101.7 99 53.5
Dinv39486 Davidia involucrata HOM05D004539 ORTHO05D005482 7.4e-20 101.7 92 57.6
TAR628G0025 Trochodendron aralioides HOM05D004539 ORTHO05D005482 1.3e-19 100.9 98 55.1
DCAR_013849 Daucus carota HOM05D004539 ORTHO05D005482 2.2e-19 100.1 97 51.5
Nn6g32243 Nelumbo nucifera HOM05D004539 ORTHO05D005482 2.8e-19 99.8 102 52.0
Sabra02G0022100 Salix brachista HOM05D004539 ORTHO05D005482 3.7e-19 99.4 87 58.6
QL02p010726 Quercus lobata HOM05D004539 ORTHO05D005482 4.8e-19 99.0 98 51.0
Sopen04g034650 Solanum pennellii HOM05D004539 ORTHO05D005482 4.8e-19 99.0 101 49.5
Prupe.1G370700 Prunus persica HOM05D004539 ORTHO05D005482 8.2e-19 98.2 103 52.4
CiPaw.08G062700 Carya illinoinensis HOM05D004539 ORTHO05D005482 1.1e-18 97.8 98 50.0
Ciclev10004791m.g Citrus clementina HOM05D004539 ORTHO05D005482 1.8e-18 97.1 92 56.5
Duzib192G0399 Durio zibethinus HOM05D004539 ORTHO05D005482 1.8e-18 97.1 92 53.3
Nitab4.5_0006718g0010 Nicotiana tabacum HOM05D004539 ORTHO05D005482 1.8e-18 97.1 101 48.5
Nitab4.5_0012730g0010 Nicotiana tabacum HOM05D004539 ORTHO05D005482 2.4e-18 96.7 101 48.5
Solyc04g081030.3 Solanum lycopersicum HOM05D004539 ORTHO05D005482 2.4e-18 96.7 101 49.5
Potri.005G234800 Populus trichocarpa HOM05D004539 ORTHO05D005482 3.1e-18 96.3 87 56.3
COL.COLO4_16338 Corchorus olitorius HOM05D004539 ORTHO05D005482 5.3e-18 95.5 90 55.6
Sabra05G0181000 Salix brachista HOM05D004539 ORTHO05D005482 7.0e-18 95.1 94 51.1
Aqoxy7G01402 Aquilegia oxysepala HOM05D004539 ORTHO05D005482 9.1e-18 94.7 99 52.5
CAN.G851.13 Capsicum annuum HOM05D004539 ORTHO05D005482 9.1e-18 94.7 100 51.0
CsaV3_3G001200 Cucumis sativus L. HOM05D004539 ORTHO05D005482 9.1e-18 94.7 103 45.6
Migut.C00791 Erythranthe guttata HOM05D004539 ORTHO05D005482 1.2e-17 94.4 99 49.5
ClCG05G018590 Citrullus lanatus HOM05D004539 ORTHO05D005482 1.6e-17 94.0 103 48.5
Sed0017053 Sechium edule HOM05D004539 ORTHO05D005482 1.6e-17 94.0 102 47.1
TWI60G0405 Tripterygium wilfordii HOM05D004539 ORTHO05D005482 1.6e-17 94.0 99 49.5
Cfa013903 Carpinus fangiana HOM05D004539 ORTHO05D005482 2.0e-17 93.6 99 50.5
PGR031G2058 Punica granatum HOM05D004539 ORTHO05D005482 2.0e-17 93.6 99 48.5
TAR628G0156 Trochodendron aralioides HOM05D004539 ORTHO05D005482 2.0e-17 93.6 99 51.5
COL.COLO4_38586 Corchorus olitorius HOM05D004539 ORTHO05D005482 2.6e-17 93.2 99 50.5
MD15G1017400 Malus domestica HOM05D004539 ORTHO05D005482 2.6e-17 93.2 105 48.6
CAN.G851.15 Capsicum annuum HOM05D004539 ORTHO05D005482 3.5e-17 92.8 101 49.5
HanXRQChr09g0269371 Helianthus annuus HOM05D004539 ORTHO05D005482 4.5e-17 92.4 96 52.1
Peaxi162Scf00287g00122 Petunia axillaris HOM05D004539 ORTHO05D005482 4.5e-17 92.4 99 47.5
ECA232G1826 Erigeron canadensis HOM05D004539 ORTHO05D005482 5.9e-17 92.0 93 51.6
Oeu036929.3 Olea europaea HOM05D004539 ORTHO05D005482 7.7e-17 91.7 97 47.4
Cpa.g.sc1191.1 Carica papaya HOM05D004539 ORTHO05D005482 1.0e-16 91.3 99 47.5
MBI05_g04844_MAGBIO Magnolia biondii HOM05D004539 ORTHO05D005482 1.0e-16 91.3 88 55.7
Gohir.A07G212900 Gossypium hirsutum HOM05D004539 ORTHO05D005482 1.7e-16 90.5 88 52.3
Lsat_1_v5_gn_4_116341 Lactuca sativa HOM05D004539 ORTHO05D005482 2.2e-16 90.1 97 50.5
Lalb_Chr03g0033831 Lupinus albus HOM05D004539 ORTHO05D005482 2.2e-16 90.1 109 46.8
Hund26867 Selenicereus undatus HOM05D004539 ORTHO05D005482 2.2e-16 90.1 93 51.6
CANSAT54G2989 Cannabis sativa HOM05D004539 ORTHO05D005482 2.9e-16 89.7 100 46.0
Cpa.g.sc147.12 Carica papaya HOM05D004539 ORTHO05D005482 2.9e-16 89.7 99 47.5
Ca_11952_v3 Cicer arietinum L. HOM05D004539 ORTHO05D005482 2.9e-16 89.7 86 50.0
MELO3C013810.2 Cucumis melo HOM05D004539 ORTHO05D005482 2.9e-16 89.7 97 45.4
Oeu030391.1 Olea europaea HOM05D004539 ORTHO05D005482 2.9e-16 89.7 94 47.9
Ciclev10011488m.g Citrus clementina HOM05D004539 ORTHO05D005482 3.8e-16 89.4 94 55.3
Haze_22584 Corylus avellana HOM05D004539 ORTHO05D005482 3.8e-16 89.4 88 51.1
Ca_22519_v3 Cicer arietinum L. HOM05D004539 ORTHO05D005482 6.5e-16 88.6 86 48.8
Lj4A486G10 Lonicera japonica HOM05D004539 ORTHO05D005482 8.5e-16 88.2 99 47.5
MD08G1018100 Malus domestica HOM05D004539 ORTHO05D005482 8.5e-16 88.2 108 44.4
THA.LOC104813189 Tarenaya hassleriana HOM05D004539 ORTHO05D005482 1.1e-15 87.8 85 49.4
Gohir.D07G219000 Gossypium hirsutum HOM05D004539 ORTHO05D005482 1.5e-15 87.4 88 48.9
Lj4C792T1 Lonicera japonica HOM05D004539 ORTHO05D005482 1.5e-15 87.4 86 51.2
Medtr4g022890 Medicago truncatula HOM05D004539 ORTHO05D005482 1.5e-15 87.4 93 53.8
Lj4C484T3 Lonicera japonica HOM05D004539 ORTHO05D005482 1.9e-15 87.0 99 46.5
arahy.Tifrunner.gnm1.ann1.ME0SR7 Arachis hypogaea HOM05D004539 ORTHO05D005482 2.5e-15 86.7 93 49.5
MSTRG.25219 Avicennia marina HOM05D004539 ORTHO05D005482 2.5e-15 86.7 93 49.5
Lj2g0012026 Lotus japonicus HOM05D004539 ORTHO05D005482 2.5e-15 86.7 86 47.7
Glyma.17G076700 Glycine max HOM05D004539 ORTHO05D005482 3.2e-15 86.3 86 50.0
Gorai.001G253500 Gossypium raimondii HOM05D004539 ORTHO05D005482 3.2e-15 86.3 87 48.3
VMungo1215G0403 Vigna mungo HOM05D004539 ORTHO05D005482 3.2e-15 86.3 86 50.0
arahy.Tifrunner.gnm1.ann1.D3BLAG Arachis hypogaea HOM05D004539 ORTHO05D005482 5.5e-15 85.5 87 51.7
Cpa.g.sc140.19 Carica papaya HOM05D004539 ORTHO05D005482 9.4e-15 84.7 99 43.4
GSVIVG01009825001 Vitis vinifera HOM05D004539 ORTHO05D005482 1.2e-14 84.3 82 52.4
Eucgr.E04075 Eucalyptus grandis HOM05D004539 ORTHO05D005482 1.6e-14 84.0 89 49.4
Sed0008828 Sechium edule HOM05D004539 ORTHO05D005482 1.6e-14 84.0 99 45.5
Sc02g0002900 Simmondsia chinensis HOM05D004539 ORTHO05D005482 1.6e-14 84.0 102 42.2
AUR62014430 Chenopodium quinoa HOM05D004539 ORTHO05D005482 2.1e-14 83.6 86 50.0
Potri.002G028100 Populus trichocarpa HOM05D004539 ORTHO05D005482 2.7e-14 83.2 66 60.6
SGA_v2.0_scaffold4G01895 Striga asiatica HOM05D004539 ORTHO05D005482 2.7e-14 83.2 92 45.7
SGA_v2.0_scaffold92G28288 Striga asiatica HOM05D004539 ORTHO05D005482 2.7e-14 83.2 92 45.7
AUR62034567 Chenopodium quinoa HOM05D004539 ORTHO05D005482 3.6e-14 82.8 86 50.0
AUR62042221 Chenopodium quinoa HOM05D004539 ORTHO05D005482 3.6e-14 82.8 86 50.0
Glyma.05G023000 Glycine max HOM05D004539 ORTHO05D005482 4.7e-14 82.4 92 47.8
FvH4_2g39030 Fragaria vesca HOM05D004539 ORTHO05D005482 6.1e-14 82.0 102 47.1
HPP92_016110 Vanilla planifolia HOM05D004539 ORTHO05D005482 6.1e-14 82.0 85 49.4
BolC7t45082H Brassica oleracea HOM05D004539 ORTHO05D005482 8.0e-14 81.6 85 52.9
PSO541G3108 Papaver somniferum HOM05D004539 ORTHO05D005482 8.0e-14 81.6 101 49.5
EL10Ac1g00555 Beta vulgaris HOM05D004539 ORTHO05D005482 1.0e-13 81.3 81 50.6
Phvul.003G186400 Phaseolus vulgaris HOM05D004539 ORTHO05D005482 1.0e-13 81.3 83 48.2
SalBow6G1219 Salvia bowleyana HOM05D004539 ORTHO05D005482 1.0e-13 81.3 88 51.1
Thhalv10010315m.g Eutrema salsugineum HOM05D004539 ORTHO05D005482 1.4e-13 80.9 88 47.7
A03p47640 Brassica napus HOM05D004539 ORTHO05D005482 1.8e-13 80.5 82 52.4
TPR.G5561 Trifolium pratense HOM05D004539 ORTHO05D005482 2.3e-13 80.1 76 52.6
Cc10_g02110 Coffea canephora HOM05D004539 ORTHO05D005482 3.0e-13 79.7 89 44.9
PSO675G8916 Papaver somniferum HOM05D004539 ORTHO05D005482 3.0e-13 79.7 101 48.5
Psat7g263720 Pisum sativum HOM05D004539 ORTHO05D005482 3.0e-13 79.7 87 51.7
BraA03t13876Z Brassica rapa HOM05D004539 ORTHO05D005482 4.0e-13 79.3 85 50.6
Aa31LG4G18400 Aethionema arabicum HOM05D004539 ORTHO05D005482 6.7e-13 78.6 97 44.3
Carub.0005s1635 Capsella rubella HOM05D004539 ORTHO05D005482 6.7e-13 78.6 82 47.6
Lj1g0010849 Lotus japonicus HOM05D004539 ORTHO05D005482 8.8e-13 78.2 102 42.2
RcHm_v2.0_Chr6g0302141 Rosa chinensis HOM05D004539 ORTHO05D005482 8.8e-13 78.2 102 45.1
BcaC06g33116 Brassica carinata HOM05D004539 ORTHO05D005482 1.2e-12 77.8 83 49.4
Sp5g12110 Schrenkiella parvula HOM05D004539 ORTHO05D005482 1.5e-12 77.4 82 46.3
BcaC06g33276 Brassica carinata HOM05D004539 ORTHO05D005482 2.0e-12 77.0 91 47.3
C07p45610 Brassica napus HOM05D004539 ORTHO05D005482 2.0e-12 77.0 91 47.3
FvH4_7g07450 Fragaria vesca HOM05D004539 ORTHO05D005482 2.6e-12 76.6 99 46.5
FAN15G3183 Fragaria x ananassa HOM05D004539 ORTHO05D005482 4.4e-12 75.9 106 43.4
FAN20G1687 Fragaria x ananassa HOM05D004539 ORTHO05D005482 4.4e-12 75.9 106 43.4
FAN05G0730 Fragaria x ananassa HOM05D000664 ORTHO05D000491 5.7e-12 75.5 95 47.4
CARHR159060 Cardamine hirsuta HOM05D004539 ORTHO05D005482 7.5e-12 75.1 85 47.1
FAN27G2077 Fragaria x ananassa HOM05D004539 ORTHO05D005482 1.3e-11 74.3 105 42.9
AL5G30050 Arabidopsis lyrata HOM05D004539 ORTHO05D005482 2.8e-11 73.2 83 47.0
AT3G49990 Arabidopsis thaliana HOM05D004539 ORTHO05D005482 3.7e-11 72.8 85 45.9
FAN22G0834 Fragaria x ananassa HOM05D004539 ORTHO05D005482 3.7e-11 72.8 95 45.3
Hund17219 Selenicereus undatus HOM05D004539 ORTHO05D005482 1.4e-10 70.9 73 47.9
ATR0691G247 Amborella trichopoda HOM05D004539 ORTHO05D005482 1.8e-10 70.5 87 44.8
CDE12G0120 Ceratophyllum demersum HOM05D004539 ORTHO05D005482 2.4e-10 70.1 85 43.5
unitig_578.g16661 Utricularia gibba HOM05D004539 ORTHO05D005482 9.1e-10 68.2 80 43.8
SHI27908 Sapria himalayana HOM05D004539 ORTHO05D005482 1.0e-08 64.7 89 41.6
MELO3C014949.2 Cucumis melo HOM05D004539 ORTHO05D005482 1.7e-08 63.9 83 49.4
FAN10G3704 Fragaria x ananassa HOM05D004539 ORTHO05D005482 2.9e-08 63.2 76 47.4
CDE04G1317 Ceratophyllum demersum HOM05D004539 ORTHO05D009003 1.2e-06 57.8 57 49.1
Zm00001eb018110 Zea mays HOM05D004539 ORTHO05D005482 3.6e-06 56.2 77 45.5
Zm00001eb394100 Zea mays HOM05D004539 ORTHO05D005482 6.1e-06 55.5 75 44.0
Zm00001eb394110 Zea mays HOM05D004539 ORTHO05D005482 6.1e-06 55.5 75 44.0


User provided reference genes

Program Settings