Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR369G0217 Trochodendron aralioides HOM05D004429 ORTHO05D005583 1.4e-99 366.3 191 100.0
Nn2g10451 Nelumbo nucifera HOM05D004429 ORTHO05D005583 5.6e-72 274.6 211 73.0
Nn2g12909 Nelumbo nucifera HOM05D004429 ORTHO05D005583 6.2e-71 271.2 199 74.9
Dinv37207 Davidia involucrata HOM05D004429 ORTHO05D005583 8.1e-71 270.8 193 72.5
MBI14_g36720_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 1.8e-65 253.1 206 69.9
Hma1.2p1_0350F.1_g132400 Hydrangea macrophylla HOM05D004429 ORTHO05D005583 4.3e-64 248.4 196 68.4
Hma1.2p1_1065F.1_g253770 Hydrangea macrophylla HOM05D004429 ORTHO05D005583 4.3e-64 248.4 196 68.4
Prupe.6G250000 Prunus persica HOM05D004429 ORTHO05D005583 5.6e-64 248.1 194 67.5
CSS0012060 Camellia sinensis var. sinensis HOM05D004429 ORTHO05D005583 9.6e-64 247.3 201 66.2
CSS0043629 Camellia sinensis var. sinensis HOM05D004429 ORTHO05D005583 2.4e-62 242.7 206 68.4
GSVIVG01025623001 Vitis vinifera HOM05D004429 ORTHO05D005583 3.1e-62 242.3 199 65.8
CiPaw.10G142900 Carya illinoinensis HOM05D004429 ORTHO05D005583 5.3e-62 241.5 195 66.2
TWI53G0393 Tripterygium wilfordii HOM05D004429 ORTHO05D005583 1.5e-61 240.0 194 67.5
MD12G1138000 Malus domestica HOM05D004429 ORTHO05D005583 2.6e-61 239.2 193 70.5
ATR0222G016 Amborella trichopoda HOM05D004429 ORTHO05D005583 5.8e-61 238.0 191 63.9
TWI74G1196 Tripterygium wilfordii HOM05D004429 ORTHO05D005583 7.6e-61 237.7 194 67.5
FvH4_6g14340 Fragaria vesca HOM05D004429 ORTHO05D005583 9.9e-61 237.3 197 65.0
FAN14G5191 Fragaria x ananassa HOM05D004429 ORTHO05D005583 9.9e-61 237.3 197 65.0
Aqoxy2G02012 Aquilegia oxysepala HOM05D004429 ORTHO05D005583 1.3e-60 236.9 214 64.0
FAN02G4491 Fragaria x ananassa HOM05D004429 ORTHO05D005583 1.3e-60 236.9 196 64.3
ClCG10G020910 Citrullus lanatus HOM05D004429 ORTHO05D005583 1.7e-60 236.5 200 68.5
MD04G1120700 Malus domestica HOM05D004429 ORTHO05D005583 2.9e-60 235.7 200 68.0
PSO339G1692 Papaver somniferum HOM05D004429 ORTHO05D005583 2.9e-60 235.7 214 67.8
Cc06_g03000 Coffea canephora HOM05D004429 ORTHO05D005583 4.9e-60 235.0 216 63.0
Gohir.D11G344900 Gossypium hirsutum HOM05D004429 ORTHO05D005583 4.9e-60 235.0 193 71.0
Gorai.007G375300 Gossypium raimondii HOM05D004429 ORTHO05D005583 4.9e-60 235.0 193 71.0
Lj2C100T9 Lonicera japonica HOM05D004429 ORTHO05D005583 6.4e-60 234.6 190 68.4
PSO648G0090 Papaver somniferum HOM05D004429 ORTHO05D005583 6.4e-60 234.6 214 67.3
FAN09G1286 Fragaria x ananassa HOM05D004429 ORTHO05D005583 1.1e-59 233.8 195 63.6
Gohir.A09G158500 Gossypium hirsutum HOM05D004429 ORTHO05D005583 1.1e-59 233.8 194 65.5
COL.COLO4_14858 Corchorus olitorius HOM05D004429 ORTHO05D005583 1.9e-59 233.0 202 67.8
QL05p010485 Quercus lobata HOM05D004429 ORTHO05D005583 3.2e-59 232.3 199 66.8
Gohir.A11G326000 Gossypium hirsutum HOM05D004429 ORTHO05D005583 4.2e-59 231.9 193 70.5
Potri.006G082400 Populus trichocarpa HOM05D004429 ORTHO05D005583 5.5e-59 231.5 196 68.4
Thecc.05G044800 Theobroma cacao HOM05D004429 ORTHO05D005583 7.1e-59 231.1 192 67.7
Manes.12G146400 Manihot esculenta HOM05D004429 ORTHO05D005583 1.2e-58 230.3 186 66.1
QL07p047160 Quercus lobata HOM05D004429 ORTHO05D005583 1.2e-58 230.3 201 66.2
Ciclev10013673m.g Citrus clementina HOM05D004429 ORTHO05D005583 3.5e-58 228.8 207 66.2
DCAR_014836 Daucus carota HOM05D004429 ORTHO05D005583 4.6e-58 228.4 202 61.9
PGSC0003DMG400008931 Solanum tuberosum HOM05D004429 ORTHO05D005583 1.0e-57 227.3 206 66.0
CsaV3_3G035100 Cucumis sativus L. HOM05D004429 ORTHO05D005583 1.3e-57 226.9 207 58.5
Oeu060052.2 Olea europaea HOM05D004429 ORTHO05D005583 1.8e-57 226.5 209 60.3
FAN05G1703 Fragaria x ananassa HOM05D004429 ORTHO05D005583 2.3e-57 226.1 188 64.4
MELO3C009280.2 Cucumis melo HOM05D004429 ORTHO05D005583 3.9e-57 225.3 203 59.1
RcHm_v2.0_Chr3g0467391 Rosa chinensis HOM05D004429 ORTHO05D005583 6.7e-57 224.6 204 65.7
Duzib106G0640 Durio zibethinus HOM05D004429 ORTHO05D005583 1.1e-56 223.8 199 62.3
Gorai.006G175400 Gossypium raimondii HOM05D004429 ORTHO05D005583 1.1e-56 223.8 192 63.5
Gohir.D09G153900 Gossypium hirsutum HOM05D004429 ORTHO05D005583 3.3e-56 222.2 194 62.4
Solyc09g010390.2 Solanum lycopersicum HOM05D004429 ORTHO05D005583 9.6e-56 220.7 206 64.1
CAN.G97.23 Capsicum annuum HOM05D004429 ORTHO05D005583 1.6e-55 219.9 194 62.9
Duzib128G1460 Durio zibethinus HOM05D004429 ORTHO05D005583 2.1e-55 219.5 197 66.0
Nitab4.5_0000216g0050 Nicotiana tabacum HOM05D004429 ORTHO05D005583 2.1e-55 219.5 198 67.2
Sopen10g034060 Solanum pennellii HOM05D004429 ORTHO05D005583 3.7e-55 218.8 207 61.8
CARHR163560 Cardamine hirsuta HOM05D004429 ORTHO05D005583 1.1e-54 217.2 194 58.2
AUR62013875 Chenopodium quinoa HOM05D004429 ORTHO05D005583 1.1e-54 217.2 208 63.0
Sabra06G0062200 Salix brachista HOM05D004429 ORTHO05D005583 1.1e-54 217.2 188 65.4
Solyc10g084620.3 Solanum lycopersicum HOM05D004429 ORTHO05D005583 1.1e-54 217.2 205 62.4
SalBow3G1038 Salvia bowleyana HOM05D004429 ORTHO05D005583 1.4e-54 216.9 206 60.2
Sp5g08720 Schrenkiella parvula HOM05D004429 ORTHO05D005583 2.4e-54 216.1 188 59.6
AL5G34580 Arabidopsis lyrata HOM05D004429 ORTHO05D005583 4.0e-54 215.3 186 60.2
AT3G53630 Arabidopsis thaliana HOM05D004429 ORTHO05D005583 6.9e-54 214.5 188 60.1
Lalb_Chr20g0113181 Lupinus albus HOM05D004429 ORTHO05D005583 6.9e-54 214.5 216 59.3
Oeu024364.1 Olea europaea HOM05D004429 ORTHO05D005583 6.9e-54 214.5 211 61.1
Peaxi162Scf00604g00415 Petunia axillaris HOM05D004429 ORTHO05D005583 6.9e-54 214.5 210 62.4
THA.LOC104823424 Tarenaya hassleriana HOM05D004429 ORTHO05D005583 1.2e-53 213.8 196 56.6
Carub.0005s2021 Capsella rubella HOM05D004429 ORTHO05D005583 1.5e-53 213.4 187 59.9
PGR004G1112 Punica granatum HOM05D004429 ORTHO05D005583 1.5e-53 213.4 216 56.9
THA.LOC104806580 Tarenaya hassleriana HOM05D004429 ORTHO05D005583 1.5e-53 213.4 202 60.4
Thhalv10010743m.g Eutrema salsugineum HOM05D004429 ORTHO05D005583 2.6e-53 212.6 192 57.8
Sed0001771 Sechium edule HOM05D004429 ORTHO05D005583 2.6e-53 212.6 211 61.6
Sed0027367 Sechium edule HOM05D004429 ORTHO05D005583 4.5e-53 211.8 204 59.8
C04p38880 Brassica napus HOM05D001071 ORTHO05D005583 7.6e-53 211.1 194 55.2
Sc20g0004500 Simmondsia chinensis HOM05D004429 ORTHO05D005583 7.6e-53 211.1 205 59.5
Aa31LG10G9470 Aethionema arabicum HOM05D004429 ORTHO05D005583 1.0e-52 210.7 183 57.9
CDE04G3062 Ceratophyllum demersum HOM05D004429 ORTHO05D005583 1.3e-52 210.3 196 60.2
Sopen09g005130 Solanum pennellii HOM05D004429 ORTHO05D005583 1.3e-52 210.3 199 63.8
BcaC02g09143 Brassica carinata HOM05D004429 ORTHO05D005583 2.2e-52 209.5 191 55.5
BolC4t25460H Brassica oleracea HOM05D004429 ORTHO05D005583 2.2e-52 209.5 191 55.5
Aa31LG5G22900 Aethionema arabicum HOM05D004429 ORTHO05D005583 3.8e-52 208.8 202 55.0
CAN.G688.9 Capsicum annuum HOM05D004429 ORTHO05D005583 3.8e-52 208.8 218 59.2
Ah.01g015860 Amaranthus hybridus HOM05D004429 ORTHO05D005583 4.9e-52 208.4 211 55.9
BcaB02g08517 Brassica carinata HOM05D004429 ORTHO05D005583 4.9e-52 208.4 190 60.5
EL10Ac1g02077 Beta vulgaris HOM05D004429 ORTHO05D005583 8.4e-52 207.6 206 60.7
BraA04t16299Z Brassica rapa HOM05D001071 ORTHO05D005583 1.9e-51 206.5 192 56.2
CiPaw.09G188700 Carya illinoinensis HOM05D004429 ORTHO05D005583 2.5e-51 206.1 196 55.1
Migut.J00365 Erythranthe guttata HOM05D004429 ORTHO05D005583 2.5e-51 206.1 220 57.7
A04p05960 Brassica napus HOM05D004429 ORTHO05D005583 3.2e-51 205.7 192 56.2
BraA09t40127Z Brassica rapa HOM05D004429 ORTHO05D005583 4.2e-51 205.3 190 56.8
BolC8t50499H Brassica oleracea HOM05D004429 ORTHO05D005583 5.5e-51 204.9 193 61.1
SGA_v2.0_scaffold126G33824 Striga asiatica HOM05D004429 ORTHO05D005583 2.1e-50 203.0 204 61.8
A09p46640 Brassica napus HOM05D004429 ORTHO05D005583 6.0e-50 201.4 190 56.3
Lsat_1_v5_gn_6_32421 Lactuca sativa HOM05D004429 ORTHO05D005583 1.0e-49 200.7 208 56.7
HanXRQChr14g0459271 Helianthus annuus HOM05D004429 ORTHO05D005583 1.8e-49 199.9 210 56.7
Phvul.001G170200 Phaseolus vulgaris HOM05D004429 ORTHO05D005583 2.3e-49 199.5 199 59.8
MSTRG.19104 Avicennia marina HOM05D004429 ORTHO05D005583 1.1e-48 197.2 195 57.4
BcaC07g39724 Brassica carinata HOM05D004429 ORTHO05D005583 1.1e-48 197.2 192 59.9
C08p28960 Brassica napus HOM05D004429 ORTHO05D005583 1.1e-48 197.2 192 59.9
Nitab4.5_0000202g0130 Nicotiana tabacum HOM05D004429 ORTHO05D005583 1.5e-48 196.8 184 65.8
BcaB01g00258 Brassica carinata HOM05D004429 ORTHO05D005583 1.9e-48 196.4 192 56.2
Lsat_1_v5_gn_2_110581 Lactuca sativa HOM05D004429 ORTHO05D005583 2.5e-48 196.1 203 59.1
AUR62036719 Chenopodium quinoa HOM05D004429 ORTHO05D005583 4.3e-48 195.3 200 55.0
Eucgr.K03161 Eucalyptus grandis HOM05D004429 ORTHO05D005583 4.3e-48 195.3 223 53.8
Glyma.19G173500 Glycine max HOM05D004429 ORTHO05D005583 5.7e-48 194.9 200 55.0
Nitab4.5_0012047g0010 Nicotiana tabacum HOM05D004429 ORTHO05D005583 1.6e-47 193.4 198 58.6
MSTRG.5688 Avicennia marina HOM05D004429 ORTHO05D005583 1.4e-46 190.3 209 52.6
arahy.Tifrunner.gnm1.ann1.2JSS8R Arachis hypogaea HOM05D004429 ORTHO05D005583 4.1e-46 188.7 152 60.5
Glyma.03G172600 Glycine max HOM05D004429 ORTHO05D005583 1.2e-45 187.2 206 51.5
PGSC0003DMG400010996 Solanum tuberosum HOM05D004429 ORTHO05D005583 2.0e-45 186.4 160 61.2
ATR0222G031 Amborella trichopoda HOM05D004429 ORTHO05D005583 5.9e-45 184.9 167 57.5
Nitab4.5_0002077g0140 Nicotiana tabacum HOM05D004429 ORTHO05D005583 1.0e-44 184.1 161 61.5
SHI12608 Sapria himalayana HOM05D004429 ORTHO05D000003 5.0e-44 181.8 196 54.1
ECA233G0195 Erigeron canadensis HOM05D004429 ORTHO05D005583 8.5e-44 181.0 205 53.2
VMungo1383G1968 Vigna mungo HOM05D004429 ORTHO05D005583 2.5e-43 179.5 184 53.8
Lj1g0006432 Lotus japonicus HOM05D004429 ORTHO05D005583 3.0e-41 172.6 216 50.0
Atru.chr8.1930 Acer truncatum HOM05D004429 ORTHO05D005583 9.7e-40 167.5 138 66.7
Migut.L01619 Erythranthe guttata HOM05D004429 ORTHO05D005583 3.7e-39 165.6 177 53.7
unitig_578.g15706 Utricularia gibba HOM05D004429 ORTHO05D005583 6.3e-39 164.9 206 46.1
HPP92_001685 Vanilla planifolia HOM05D004429 ORTHO05D005583 6.3e-39 164.9 206 48.5
COL.COLO4_24433 Corchorus olitorius HOM05D004429 ORTHO05D005583 6.9e-38 161.4 127 63.8
Os03g0279600 Oryza sativa ssp. japonica HOM05D004429 ORTHO05D005583 1.2e-37 160.6 213 45.5
SEGI_08514 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 1.0e-36 157.5 182 45.6
Zm00001eb012690 Zea mays HOM05D004429 ORTHO05D005583 1.7e-36 156.8 206 43.2
unitig_26.g9203 Utricularia gibba HOM05D004429 ORTHO05D005583 8.5e-36 154.5 138 57.2
SEGI_33598 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 1.4e-35 153.7 202 46.0
TPR.G11987 Trifolium pratense HOM05D004429 ORTHO05D005583 1.4e-35 153.7 187 47.1
MBI18_g47300_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 2.1e-34 149.8 121 68.6
QL01p033097 Quercus lobata HOM05D004429 ORTHO05D005583 4.6e-34 148.7 194 43.8
MBI06_g43519_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 1.8e-33 146.7 121 67.8
Aqoxy3G04288 Aquilegia oxysepala HOM05D004429 ORTHO05D005583 3.9e-33 145.6 138 55.1
Ca_08790_v3 Cicer arietinum L. HOM05D004429 ORTHO05D005583 1.7e-31 140.2 198 43.4
Haze_24041 Corylus avellana HOM05D004429 ORTHO05D005583 2.2e-31 139.8 144 48.6
Medtr7g099970 Medicago truncatula HOM05D004429 ORTHO05D005583 6.3e-31 138.3 206 39.8
Rhsim05G0188000 Rhododendron simsii HOM05D004429 ORTHO05D005583 6.3e-31 138.3 139 56.8
DCAR_017884 Daucus carota HOM05D004429 ORTHO05D005583 5.3e-30 135.2 195 45.1
SGA_v2.0_scaffold87G27174 Striga asiatica HOM05D004429 ORTHO05D005583 6.9e-30 134.8 143 55.9
Atru.chr7.899 Acer truncatum HOM05D004429 ORTHO05D005583 9.1e-30 134.4 114 64.0
Atru.chr3.3828 Acer truncatum HOM05D004429 ORTHO05D005583 1.7e-28 130.2 145 45.5
Ciclev10029396m.g Citrus clementina HOM05D004429 ORTHO05D005583 2.5e-27 126.3 188 41.5
SEGI_24259 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 4.2e-27 125.6 170 41.8
CDE07G1713 Ceratophyllum demersum HOM05D004429 ORTHO05D005583 2.3e-25 119.8 183 43.7
CBR_g20121 Chara braunii HOM05D004429 ORTHO05D005583 2.3e-25 119.8 103 48.5
Actinidia05294 Actinidia chinensis HOM05D004429 ORTHO05D005583 1.3e-23 114.0 100 58.0
Psat3g048680 Pisum sativum HOM05D004429 ORTHO05D005583 1.7e-23 113.6 201 37.8
SMO348G0079 Selaginella moellendorffii HOM05D004429 ORTHO05D005583 2.6e-21 106.3 84 51.2
Mapoly0066s0057 Marchantia polymorpha HOM05D004429 ORTHO05D005583 1.7e-20 103.6 92 51.1
Pp3c15_19860 Physcomitrium patens HOM05D004429 ORTHO05D005583 9.4e-19 97.8 84 47.6
Pp3c9_19700 Physcomitrium patens HOM05D004429 ORTHO05D005583 2.1e-18 96.7 84 46.4
Sopen04g022580 Solanum pennellii HOM05D004429 ORTHO05D005583 2.1e-18 96.7 183 38.8
Pp3c4_10520 Physcomitrium patens HOM05D004429 ORTHO05D005583 6.1e-18 95.1 81 50.6
TPR.G8932 Trifolium pratense HOM05D004429 ORTHO05D005583 1.0e-17 94.4 91 49.5
EL10Ac5g11422 Beta vulgaris HOM05D004429 ORTHO05D005583 2.0e-16 90.1 112 51.8
EL10Ac9g21191 Beta vulgaris HOM05D006860 ORTHO05D009547 1.1e-14 84.3 109 49.5
TPR.G14114 Trifolium pratense HOM05D004429 ORTHO05D005583 9.1e-14 81.3 110 42.7
C06p21580 Brassica napus HOM05D004429 ORTHO05D021447 8.0e-10 68.2 67 52.2
SGA_v2.0_scaffold61G21134 Striga asiatica HOM05D004429 ORTHO05D005583 8.0e-10 68.2 164 36.0
BolC6t37347H Brassica oleracea HOM05D004429 ORTHO05D021447 2.3e-09 66.6 67 52.2
SGA_v2.0_scaffold32G13323 Striga asiatica HOM05D004429 ORTHO05D005583 2.6e-08 63.2 90 48.9


User provided reference genes

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