Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR369G0142 Trochodendron aralioides HOM05D005349 ORTHO05D006901 3.8e-84 314.7 149 100.0
TAR369G0898 Trochodendron aralioides HOM05D005349 ORTHO05D006901 2.6e-80 302.0 149 96.6
TAR369G0502 Trochodendron aralioides HOM05D005349 ORTHO05D006901 1.3e-79 299.7 144 98.6
TAR633G1541 Trochodendron aralioides HOM05D005349 ORTHO05D006901 1.1e-75 286.6 149 91.9
Nn2g13609 Nelumbo nucifera HOM05D005349 ORTHO05D006901 2.8e-71 271.9 149 84.6
Nn7g36392 Nelumbo nucifera HOM05D005349 ORTHO05D006901 6.5e-68 260.8 144 83.3
MBI06_g38157_MAGBIO Magnolia biondii HOM05D005349 ORTHO05D006901 2.1e-66 255.8 149 80.5
Nitab4.5_0000021g0450 Nicotiana tabacum HOM05D001216 ORTHO05D008355 5.7e-64 247.7 141 79.4
Cpa.g.sc112.60 Carica papaya HOM05D005349 ORTHO05D006901 7.5e-64 247.3 141 78.7
COL.COLO4_19094 Corchorus olitorius HOM05D005349 ORTHO05D006901 1.3e-63 246.5 141 78.0
Gohir.D13G230100 Gossypium hirsutum HOM05D005349 ORTHO05D006901 1.3e-63 246.5 141 78.0
Gorai.013G260800 Gossypium raimondii HOM05D005349 ORTHO05D006901 1.3e-63 246.5 141 78.0
Gohir.A13G225100 Gossypium hirsutum HOM05D005349 ORTHO05D006901 1.7e-63 246.1 141 78.0
Oeu049278.1 Olea europaea HOM05D005349 ORTHO05D006901 1.7e-63 246.1 149 75.2
CiPaw.13G081900 Carya illinoinensis HOM05D005349 ORTHO05D006901 2.2e-63 245.7 141 77.3
Duzib168G1908 Durio zibethinus HOM05D005349 ORTHO05D006901 2.2e-63 245.7 141 78.0
Thecc.09G306800 Theobroma cacao HOM05D005349 ORTHO05D006901 2.2e-63 245.7 141 78.7
Hma1.2p1_0543F.1_g175200 Hydrangea macrophylla HOM05D005349 ORTHO05D006901 3.7e-63 245.0 140 79.3
QL01p027076 Quercus lobata HOM05D005349 ORTHO05D006901 3.7e-63 245.0 148 75.0
CAN.G206.119 Capsicum annuum HOM05D005349 ORTHO05D006901 4.9e-63 244.6 149 75.2
Solyc02g087650.4 Solanum lycopersicum HOM05D005349 ORTHO05D006901 4.9e-63 244.6 149 74.5
Hma1.2p1_3368F.1_g335610 Hydrangea macrophylla HOM05D005349 ORTHO05D006901 6.3e-63 244.2 140 79.3
Lj4P290T21 Lonicera japonica HOM05D005349 ORTHO05D006901 6.3e-63 244.2 141 78.0
FAN11G0404 Fragaria x ananassa HOM05D005349 ORTHO05D006901 8.3e-63 243.8 141 78.7
Cc01_g13820 Coffea canephora HOM05D005349 ORTHO05D006901 1.1e-62 243.4 140 79.3
Oeu009384.1 Olea europaea HOM05D005349 ORTHO05D006901 1.4e-62 243.0 141 77.3
RcHm_v2.0_Chr5g0068461 Rosa chinensis HOM05D005349 ORTHO05D006901 1.4e-62 243.0 141 78.7
Sopen02g032400 Solanum pennellii HOM05D005349 ORTHO05D006901 1.4e-62 243.0 148 73.6
CSS0008956 Camellia sinensis var. sinensis HOM05D005349 ORTHO05D006901 2.4e-62 242.3 141 77.3
AUR62001690 Chenopodium quinoa HOM05D005349 ORTHO05D006901 2.4e-62 242.3 141 75.9
Dinv28589 Davidia involucrata HOM05D005349 ORTHO05D006901 2.4e-62 242.3 141 78.0
Dinv28608 Davidia involucrata HOM05D005349 ORTHO05D006901 2.4e-62 242.3 141 78.0
Nitab4.5_0002265g0210 Nicotiana tabacum HOM05D005349 ORTHO05D006901 2.4e-62 242.3 141 76.6
PGR102G2751 Punica granatum HOM05D005349 ORTHO05D006901 3.1e-62 241.9 141 78.0
MD03G1077000 Malus domestica HOM05D005349 ORTHO05D006901 4.1e-62 241.5 140 76.4
Manes.17G019100 Manihot esculenta HOM05D005349 ORTHO05D006901 4.1e-62 241.5 141 76.6
PSO017G5320 Papaver somniferum HOM05D005349 ORTHO05D006901 4.1e-62 241.5 149 74.5
PSO675G4048 Papaver somniferum HOM05D005349 ORTHO05D006901 4.1e-62 241.5 149 74.5
PGSC0003DMG400001310 Solanum tuberosum HOM05D005349 ORTHO05D006901 4.1e-62 241.5 149 73.8
PGSC0003DMG400001415 Solanum tuberosum HOM05D005349 ORTHO05D006901 4.1e-62 241.5 149 73.8
AUR62020092 Chenopodium quinoa HOM05D005349 ORTHO05D006901 5.4e-62 241.1 141 75.2
FvH4_3g38110 Fragaria vesca HOM05D005349 ORTHO05D006901 5.4e-62 241.1 141 78.0
Peaxi162Scf00129g00059 Petunia axillaris HOM05D005349 ORTHO05D006901 5.4e-62 241.1 141 76.6
PGR102G2487 Punica granatum HOM05D005349 ORTHO05D006901 5.4e-62 241.1 141 78.0
FAN16G1977 Fragaria x ananassa HOM05D005349 ORTHO05D006901 9.2e-62 240.4 141 78.0
Prupe.6G061600 Prunus persica HOM05D005349 ORTHO05D006901 9.2e-62 240.4 137 77.4
MD11G1081300 Malus domestica HOM05D005349 ORTHO05D006901 1.2e-61 240.0 140 75.0
THA.LOC104810731 Tarenaya hassleriana HOM05D005349 ORTHO05D006901 1.2e-61 240.0 142 74.6
Migut.I00090 Erythranthe guttata HOM05D005349 ORTHO05D006901 1.6e-61 239.6 141 75.9
Aqoxy3G03834 Aquilegia oxysepala HOM05D005349 ORTHO05D006901 2.0e-61 239.2 141 77.3
Hund18861 Selenicereus undatus HOM05D005349 ORTHO05D006901 2.0e-61 239.2 139 77.7
Sc12g0000960 Simmondsia chinensis HOM05D005349 ORTHO05D006901 2.7e-61 238.8 141 75.9
Potri.009G042300 Populus trichocarpa HOM05D005349 ORTHO05D006901 3.5e-61 238.4 141 73.8
Sabra09G0029800 Salix brachista HOM05D005349 ORTHO05D006901 3.5e-61 238.4 141 73.8
A03p11980 Brassica napus HOM05D005349 ORTHO05D006901 1.0e-60 236.9 142 73.2
C03p14070 Brassica napus HOM05D005349 ORTHO05D006901 1.0e-60 236.9 142 73.2
BolC3t13854H Brassica oleracea HOM05D005349 ORTHO05D006901 1.0e-60 236.9 142 73.2
BraA03t10509Z Brassica rapa HOM05D005349 ORTHO05D006901 1.0e-60 236.9 142 73.2
Carub.0008s1956 Capsella rubella HOM05D005349 ORTHO05D006901 1.0e-60 236.9 142 72.5
Cfa011642 Carpinus fangiana HOM05D005349 ORTHO05D006901 1.0e-60 236.9 149 71.1
Sp6g20620 Schrenkiella parvula HOM05D005349 ORTHO05D006901 1.0e-60 236.9 142 72.5
Aqoxy5G03549 Aquilegia oxysepala HOM05D005349 ORTHO05D006901 1.3e-60 236.5 139 77.0
AL8G35250 Arabidopsis lyrata HOM05D005349 ORTHO05D006901 1.3e-60 236.5 142 72.5
MSTRG.12084 Avicennia marina HOM05D005349 ORTHO05D006901 1.3e-60 236.5 144 74.3
Thhalv10014880m.g Eutrema salsugineum HOM05D005349 ORTHO05D006901 1.3e-60 236.5 142 72.5
DCAR_007395 Daucus carota HOM05D005349 ORTHO05D006901 1.7e-60 236.1 141 75.2
DCAR_005899 Daucus carota HOM05D005349 ORTHO05D006901 2.3e-60 235.7 141 74.5
ATR0618G061 Amborella trichopoda HOM05D005349 ORTHO05D006901 2.9e-60 235.3 149 72.5
Ah.13g068160 Amaranthus hybridus HOM05D005349 ORTHO05D006901 3.8e-60 235.0 139 74.8
Aa31LG1G11620 Aethionema arabicum HOM05D005349 ORTHO05D006901 5.0e-60 234.6 140 73.6
BcaB05g22458 Brassica carinata HOM05D005349 ORTHO05D006901 5.0e-60 234.6 143 72.0
BcaC03g14066 Brassica carinata HOM05D005349 ORTHO05D006901 5.0e-60 234.6 142 72.5
A02p07450 Brassica napus HOM05D005349 ORTHO05D006901 5.0e-60 234.6 142 71.8
BraA02t05823Z Brassica rapa HOM05D005349 ORTHO05D006901 5.0e-60 234.6 142 71.8
AT5G58920 Arabidopsis thaliana HOM05D005349 ORTHO05D006901 6.6e-60 234.2 142 71.1
Rhsim01G0234700 Rhododendron simsii HOM05D005349 ORTHO05D006901 6.6e-60 234.2 149 71.8
Ah.13g068140 Amaranthus hybridus HOM05D005349 ORTHO05D006901 8.6e-60 233.8 139 74.1
Haze_24248 Corylus avellana HOM05D005349 ORTHO05D006901 8.6e-60 233.8 149 70.5
Lalb_Chr17g0344951 Lupinus albus HOM05D005349 ORTHO05D006901 8.6e-60 233.8 149 71.8
C02p13010 Brassica napus HOM05D005349 ORTHO05D006901 1.5e-59 233.0 142 72.5
CARHR272860 Cardamine hirsuta HOM05D005349 ORTHO05D006901 1.5e-59 233.0 142 70.4
BolC2t07413H Brassica oleracea HOM05D005349 ORTHO05D006901 1.9e-59 232.6 142 71.8
Psat2g059680 Pisum sativum HOM05D005349 ORTHO05D006901 5.6e-59 231.1 140 73.6
Glyma.14G191200 Glycine max HOM05D005349 ORTHO05D006901 7.3e-59 230.7 140 74.3
LjContig00155g0000909 Lotus japonicus HOM05D005349 ORTHO05D006901 7.3e-59 230.7 139 75.5
arahy.Tifrunner.gnm1.ann1.AUQG9H Arachis hypogaea HOM05D005349 ORTHO05D006901 2.1e-58 229.2 140 72.9
arahy.Tifrunner.gnm1.ann1.S3TFE0 Arachis hypogaea HOM05D005349 ORTHO05D006901 2.1e-58 229.2 140 72.9
Sed0012895 Sechium edule HOM05D005349 ORTHO05D006901 2.1e-58 229.2 149 69.1
VMungo0647G2322 Vigna mungo HOM05D005349 ORTHO05D006901 2.1e-58 229.2 140 72.9
Ca_05579_v3 Cicer arietinum L. HOM05D005349 ORTHO05D006901 4.7e-58 228.0 140 72.9
Eucgr.B02277 Eucalyptus grandis HOM05D005349 ORTHO05D006901 8.0e-58 227.3 141 72.3
SalBow2G1455 Salvia bowleyana HOM05D005349 ORTHO05D006901 1.0e-57 226.9 153 68.6
arahy.Tifrunner.gnm1.ann1.2I3SKZ Arachis hypogaea HOM05D005349 ORTHO05D006901 1.4e-57 226.5 140 72.1
arahy.Tifrunner.gnm1.ann1.TC15WI Arachis hypogaea HOM05D005349 ORTHO05D006901 1.8e-57 226.1 140 72.1
MELO3C020577.2 Cucumis melo HOM05D005349 ORTHO05D006901 1.8e-57 226.1 141 72.3
Zm00001eb031680 Zea mays HOM05D005349 ORTHO05D006901 1.8e-57 226.1 136 73.5
Ciclev10029468m.g Citrus clementina HOM05D005349 ORTHO05D006901 5.2e-57 224.6 142 71.1
CsaV3_1G035930 Cucumis sativus L. HOM05D005349 ORTHO05D006901 5.2e-57 224.6 149 67.8
Medtr5g069660 Medicago truncatula HOM05D005349 ORTHO05D006901 6.8e-57 224.2 147 69.4
Phvul.008G263400 Phaseolus vulgaris HOM05D005349 ORTHO05D006901 8.9e-57 223.8 140 70.0
unitig_0.g448 Utricularia gibba HOM05D005349 ORTHO05D006901 8.9e-57 223.8 144 70.8
ClCG03G001010 Citrullus lanatus HOM05D005349 ORTHO05D006901 9.8e-56 220.3 149 69.1
HanXRQChr08g0237161 Helianthus annuus HOM05D005349 ORTHO05D006901 1.1e-54 216.9 142 70.4
Lsat_1_v5_gn_9_25761 Lactuca sativa HOM05D005349 ORTHO05D006901 2.4e-54 215.7 141 68.1
TPR.G24015 Trifolium pratense HOM05D005349 ORTHO05D006901 2.4e-54 215.7 139 68.3
GSVIVG01024797001 Vitis vinifera HOM05D005349 ORTHO05D006901 7.0e-54 214.2 147 68.0
ECA236G3830 Erigeron canadensis HOM05D005329 ORTHO05D006858 1.6e-53 213.0 136 69.9
CDE05G1614 Ceratophyllum demersum HOM05D005349 ORTHO05D006901 3.5e-53 211.8 144 64.6
TWI31G0683 Tripterygium wilfordii HOM05D005349 ORTHO05D006901 3.0e-52 208.8 142 66.2
HanXRQChr02g0036251 Helianthus annuus HOM05D005349 ORTHO05D006901 3.9e-52 208.4 138 68.8
SGA_v2.0_scaffold120G32925 Striga asiatica HOM05D005349 ORTHO05D006901 8.6e-52 207.2 135 66.7
Ah.06g188660 Amaranthus hybridus HOM05D005349 ORTHO05D006901 1.1e-51 206.8 124 74.2
Actinidia23901 Actinidia chinensis HOM05D005349 ORTHO05D006901 2.8e-50 202.2 141 66.0
CANSAT54G2462 Cannabis sativa HOM05D005349 ORTHO05D006901 4.7e-50 201.4 141 65.2
COL.COLO4_19096 Corchorus olitorius HOM05D005349 ORTHO05D006901 1.3e-44 183.3 109 76.1
BcaB01g04630 Brassica carinata HOM05D005349 ORTHO05D006901 3.3e-43 178.7 142 60.6
SEGI_38965 Sequoiadendron giganteum HOM05D005349 ORTHO05D006901 7.3e-43 177.6 123 67.5
RcHm_v2.0_Chr5g0068491 Rosa chinensis HOM05D005349 ORTHO05D006901 1.4e-41 173.3 141 59.6
SEGI_26492 Sequoiadendron giganteum HOM05D005349 ORTHO05D006901 4.0e-41 171.8 124 65.3
Mapoly0132s0009 Marchantia polymorpha HOM05D005349 ORTHO05D006901 5.8e-40 167.9 122 59.8
Lalb_Chr15g0082641 Lupinus albus HOM05D005349 ORTHO05D006901 9.9e-40 167.2 141 54.6
Lalb_Chr15g0082661 Lupinus albus HOM05D005349 ORTHO05D006901 1.1e-38 163.7 141 53.2
Pp3c5_10690 Physcomitrium patens HOM05D005349 ORTHO05D006901 4.3e-35 151.8 125 56.0
ECA247G0916 Erigeron canadensis HOM05D000773 ORTHO05D006901 9.5e-35 150.6 103 64.1
Lj6g0020380 Lotus japonicus HOM05D005349 ORTHO05D006901 9.5e-35 150.6 141 54.6
Ca_14903_v3 Cicer arietinum L. HOM05D005349 ORTHO05D006901 2.8e-34 149.1 142 53.5
Os01g0362000 Oryza sativa ssp. japonica HOM05D005349 ORTHO05D006901 4.9e-31 138.3 90 73.3
Psat5g161800 Pisum sativum HOM05D005349 ORTHO05D006901 1.4e-30 136.7 142 50.0
Medtr3g462700 Medicago truncatula HOM05D005349 ORTHO05D006901 1.6e-29 133.3 142 50.0
arahy.Tifrunner.gnm1.ann1.B244J5 Arachis hypogaea HOM05D005349 ORTHO05D006901 7.8e-29 131.0 154 49.4
arahy.Tifrunner.gnm1.ann1.NW0IJW Arachis hypogaea HOM05D005349 ORTHO05D006901 1.3e-28 130.2 154 49.4
Glyma.18G064800 Glycine max HOM05D005349 ORTHO05D006901 1.3e-28 130.2 141 48.9
CSS0044332 Camellia sinensis var. sinensis HOM05D005349 ORTHO05D006901 1.8e-25 119.8 126 50.0
TPR.G13285 Trifolium pratense HOM05D005349 ORTHO05D006901 3.4e-24 115.5 143 44.1
Phvul.006G066000 Phaseolus vulgaris HOM05D005349 ORTHO05D006901 4.4e-24 115.2 142 43.7
Nitab4.5_0000564g0380 Nicotiana tabacum HOM05D005349 ORTHO05D006901 2.1e-18 96.3 67 70.1
BcaC04g19863 Brassica carinata HOM05D005349 ORTHO05D023983 1.4e-17 93.6 118 40.7
A10p15360 Brassica napus HOM05D005349 ORTHO05D006901 1.9e-14 83.2 59 61.0
BcaB01g04628 Brassica carinata HOM05D005349 ORTHO05D023983 1.8e-12 76.6 53 66.0
TAR623G0970 Trochodendron aralioides HOM05D005349 ORTHO05D415159 3.0e-12 75.9 91 47.3
BolC9t57969H Brassica oleracea HOM05D005349 ORTHO05D023983 1.6e-10 70.1 118 34.7
SEGI_40143 Sequoiadendron giganteum HOM05D005349 ORTHO05D006901 6.9e-09 64.7 58 55.2
C09p51090 Brassica napus HOM05D005349 ORTHO05D023983 1.5e-08 63.5 49 59.2
HanXRQChr08g0237061 Helianthus annuus HOM05D005349 ORTHO05D006901 9.9e-08 60.8 62 48.4
BraA10t43697Z Brassica rapa HOM05D005349 ORTHO05D023983 2.4e-06 56.2 46 56.5


User provided reference genes

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