Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR369G0013 Trochodendron aralioides HOM05D004965 ORTHO05D004401 1.3e-48 196.1 98 100.0
TAR374G1442 Trochodendron aralioides HOM05D004965 ORTHO05D004401 1.4e-26 122.9 98 63.3
TAR629G2889 Trochodendron aralioides HOM05D004965 ORTHO05D004401 9.1e-26 120.2 97 61.9
TAR622G1192 Trochodendron aralioides HOM05D004965 ORTHO05D004401 2.5e-23 112.1 84 67.9
Dinv24933 Davidia involucrata HOM05D004965 ORTHO05D004401 7.4e-20 100.5 98 56.1
Thecc.04G069500 Theobroma cacao HOM05D004965 ORTHO05D004401 7.4e-20 100.5 98 53.1
Nn4g22977 Nelumbo nucifera HOM05D004965 ORTHO05D004401 1.7e-19 99.4 99 58.6
GSVIVG01020127001 Vitis vinifera HOM05D004965 ORTHO05D004401 2.8e-19 98.6 99 52.5
Manes.15G177900 Manihot esculenta HOM05D004965 ORTHO05D004401 1.1e-18 96.7 98 51.0
Nn3g17067 Nelumbo nucifera HOM05D004965 ORTHO05D004401 1.1e-18 96.7 102 56.9
Cpa.g.sc14.63 Carica papaya HOM05D004965 ORTHO05D004401 1.8e-18 95.9 98 50.0
Haze_14606 Corylus avellana HOM05D004965 ORTHO05D004401 7.0e-18 94.0 89 58.4
Potri.017G074600 Populus trichocarpa HOM05D004965 ORTHO05D004401 7.0e-18 94.0 98 51.0
Dinv33690 Davidia involucrata HOM05D004965 ORTHO05D004401 9.1e-18 93.6 97 57.7
CSS0043755 Camellia sinensis var. sinensis HOM05D004965 ORTHO05D004401 2.0e-17 92.4 99 52.5
MBI01_g13075_MAGBIO Magnolia biondii HOM05D004965 ORTHO05D004401 2.6e-17 92.0 100 54.0
CiPaw.04G021200 Carya illinoinensis HOM05D004965 ORTHO05D004401 1.3e-16 89.7 98 50.0
Actinidia06052 Actinidia chinensis HOM05D004965 ORTHO05D004401 1.7e-16 89.4 94 50.0
QL02p079418 Quercus lobata HOM05D004965 ORTHO05D004401 2.2e-16 89.0 94 53.2
Actinidia12285 Actinidia chinensis HOM05D004965 ORTHO05D004401 6.5e-16 87.4 94 52.1
CSS0011493 Camellia sinensis var. sinensis HOM05D004965 ORTHO05D004401 1.1e-15 86.7 82 57.3
TWI36G1294 Tripterygium wilfordii HOM05D004965 ORTHO05D004401 2.5e-15 85.5 100 49.0
Dinv31145 Davidia involucrata HOM05D004965 ORTHO05D004401 9.4e-15 83.6 99 51.5
Atru.chr8.2466 Acer truncatum HOM05D004965 ORTHO05D004401 1.2e-14 83.2 101 49.5
Gohir.A07G216700 Gossypium hirsutum HOM05D004965 ORTHO05D004401 1.6e-14 82.8 81 55.6
CiPaw.03G032200 Carya illinoinensis HOM05D004965 ORTHO05D004401 2.1e-14 82.4 88 51.1
Ciclev10033175m.g Citrus clementina HOM05D004965 ORTHO05D004401 2.1e-14 82.4 98 49.0
MD09G1042500 Malus domestica HOM05D004965 ORTHO05D004401 2.1e-14 82.4 98 48.0
Prupe.1G263100 Prunus persica HOM05D004965 ORTHO05D004401 4.7e-14 81.3 95 50.5
Prupe.3G275200 Prunus persica HOM05D004965 ORTHO05D004401 6.1e-14 80.9 94 47.9
TWI56G0241 Tripterygium wilfordii HOM05D004965 ORTHO05D004401 6.1e-14 80.9 100 46.0
Lj2g0009068 Lotus japonicus HOM05D004965 ORTHO05D004401 8.0e-14 80.5 88 48.9
Gohir.D07G223500 Gossypium hirsutum HOM05D004965 ORTHO05D004401 1.0e-13 80.1 81 54.3
Gorai.001G257800 Gossypium raimondii HOM05D004965 ORTHO05D004401 1.0e-13 80.1 81 54.3
MBI04_g09739_MAGBIO Magnolia biondii HOM05D004965 ORTHO05D004401 1.0e-13 80.1 109 45.9
Thecc.02G237300 Theobroma cacao HOM05D004965 ORTHO05D004401 1.0e-13 80.1 98 50.0
Cc11_g13890 Coffea canephora HOM05D004965 ORTHO05D004401 1.4e-13 79.7 96 45.8
Ciclev10013642m.g Citrus clementina HOM05D004965 ORTHO05D004401 1.8e-13 79.3 93 46.2
Aqoxy3G03187 Aquilegia oxysepala HOM05D004965 ORTHO05D004401 4.0e-13 78.2 100 47.0
Cfa007493 Carpinus fangiana HOM05D004965 ORTHO05D004401 5.2e-13 77.8 85 51.8
Glyma.13G067000 Glycine max HOM05D004965 ORTHO05D004401 5.2e-13 77.8 100 47.0
Sabra17G0067000 Salix brachista HOM05D004965 ORTHO05D004401 6.8e-13 77.4 84 51.2
RcHm_v2.0_Chr2g0169701 Rosa chinensis HOM05D004965 ORTHO05D004401 1.5e-12 76.3 100 48.0
RcHm_v2.0_Chr4g0445011 Rosa chinensis HOM05D004965 ORTHO05D004401 2.0e-12 75.9 103 43.7
TPR.G32595 Trifolium pratense HOM05D004965 ORTHO05D004401 2.0e-12 75.9 104 45.2
FAN22G1750 Fragaria x ananassa HOM05D004965 ORTHO05D004401 3.4e-12 75.1 104 43.3
Glyma.19G017400 Glycine max HOM05D004965 ORTHO05D004401 3.4e-12 75.1 100 45.0
Lj2g0004313 Lotus japonicus HOM05D004965 ORTHO05D004401 4.4e-12 74.7 80 46.2
Phvul.004G023800 Phaseolus vulgaris HOM05D004965 ORTHO05D004401 4.4e-12 74.7 100 46.0
Phvul.002G079000 Phaseolus vulgaris HOM05D004965 ORTHO05D004401 9.8e-12 73.6 92 48.9
Psat1g077560 Pisum sativum HOM05D004965 ORTHO05D004401 9.8e-12 73.6 99 44.4
EL10Ac6g13083 Beta vulgaris HOM05D004965 ORTHO05D004401 1.3e-11 73.2 104 43.3
FvH4_6g49680 Fragaria vesca HOM05D004965 ORTHO05D004401 1.3e-11 73.2 91 48.4
Lalb_Chr09g0326631 Lupinus albus HOM05D004965 ORTHO05D004401 1.3e-11 73.2 101 47.5
FAN02G2636 Fragaria x ananassa HOM05D004965 ORTHO05D004401 1.7e-11 72.8 91 47.3
Glyma.01G038900 Glycine max HOM05D004965 ORTHO05D004401 2.2e-11 72.4 92 46.7
FAN07G0801 Fragaria x ananassa HOM05D004965 ORTHO05D004401 3.7e-11 71.6 104 41.3
Glyma.02G025700 Glycine max HOM05D004965 ORTHO05D004401 3.7e-11 71.6 92 45.7
Lalb_Chr05g0217401 Lupinus albus HOM05D004965 ORTHO05D004401 4.8e-11 71.2 101 45.5
CiPaw.06G078100 Carya illinoinensis HOM05D004965 ORTHO05D004401 6.3e-11 70.9 91 47.3
FvH4_4g35400 Fragaria vesca HOM05D004965 ORTHO05D004401 8.3e-11 70.5 104 41.3
FAN14G2761 Fragaria x ananassa HOM05D004965 ORTHO05D004401 8.3e-11 70.5 90 46.7
PGR119G0489 Punica granatum HOM05D004965 ORTHO05D004401 1.1e-10 70.1 94 43.6
COL.COLO4_36990 Corchorus olitorius HOM05D004965 ORTHO05D004401 1.4e-10 69.7 61 57.4
Duzib187G0871 Durio zibethinus HOM05D004965 ORTHO05D004401 1.4e-10 69.7 50 64.0
FAN09G1906 Fragaria x ananassa HOM05D004965 ORTHO05D004401 1.4e-10 69.7 91 46.2
MD16G1082900 Malus domestica HOM05D004965 ORTHO05D004401 1.4e-10 69.7 99 47.5
Aqoxy3G00848 Aquilegia oxysepala HOM05D004965 ORTHO05D004401 1.8e-10 69.3 95 44.2
Duzib248G0243 Durio zibethinus HOM05D004965 ORTHO05D004401 1.8e-10 69.3 107 39.3
FAN05G5108 Fragaria x ananassa HOM05D004965 ORTHO05D004401 2.4e-10 68.9 91 46.2
Lalb_Chr06g0176581 Lupinus albus HOM05D004965 ORTHO05D004401 2.4e-10 68.9 88 46.6
MD17G1044000 Malus domestica HOM05D004965 ORTHO05D004401 2.4e-10 68.9 84 45.2
Potri.008G191500 Populus trichocarpa HOM05D004965 ORTHO05D004401 2.4e-10 68.9 108 45.4
PGR083G1219 Punica granatum HOM05D004965 ORTHO05D004401 2.4e-10 68.9 93 46.2
vmacro16304 Vaccinium macrocarpon HOM05D004965 ORTHO05D004401 2.4e-10 68.9 97 45.4
Lalb_Chr21g0319141 Lupinus albus HOM05D004965 ORTHO05D004401 4.1e-10 68.2 88 45.5
MD13G1083500 Malus domestica HOM05D004965 ORTHO05D004401 4.1e-10 68.2 100 48.0
CSS0014777 Camellia sinensis var. sinensis HOM05D004965 ORTHO05D004401 5.4e-10 67.8 84 48.8
CiPaw.05G143500 Carya illinoinensis HOM05D004965 ORTHO05D004401 7.0e-10 67.4 97 44.3
PGSC0003DMG400022630 Solanum tuberosum HOM05D004965 ORTHO05D004401 7.0e-10 67.4 95 41.1
MSTRG.2369 Avicennia marina HOM05D004965 ORTHO05D004401 1.2e-09 66.6 89 47.2
Manes.05G094200 Manihot esculenta HOM05D004965 ORTHO05D004401 1.2e-09 66.6 90 47.8
ClCG08G009090 Citrullus lanatus HOM05D004965 ORTHO05D004401 2.0e-09 65.9 98 43.9
Duzib251G0216 Durio zibethinus HOM05D004965 ORTHO05D004401 2.0e-09 65.9 114 40.4
Eucgr.B02578 Eucalyptus grandis HOM05D004965 ORTHO05D004401 2.0e-09 65.9 93 45.2
Hund25308 Selenicereus undatus HOM05D004965 ORTHO05D004401 2.0e-09 65.9 96 44.8
Potri.010G039800 Populus trichocarpa HOM05D004965 ORTHO05D004401 3.5e-09 65.1 96 42.7
MELO3C026507.2 Cucumis melo HOM05D004965 ORTHO05D004401 4.5e-09 64.7 97 42.3
DCAR_006716 Daucus carota HOM05D004965 ORTHO05D004401 4.5e-09 64.7 94 42.6
Duzib268G0529 Durio zibethinus HOM05D004965 ORTHO05D004401 4.5e-09 64.7 96 41.7
vmacro05780 Vaccinium macrocarpon HOM05D004965 ORTHO05D004401 5.9e-09 64.3 84 51.2
Gohir.A03G144700 Gossypium hirsutum HOM05D004965 ORTHO05D004401 7.7e-09 63.9 46 69.6
CsaV3_6G036050 Cucumis sativus L. HOM05D004965 ORTHO05D004401 1.0e-08 63.5 100 40.0
FAN12G3850 Fragaria x ananassa HOM05D004965 ORTHO05D004401 1.3e-08 63.2 100 43.0
Medtr5g037140 Medicago truncatula HOM05D004965 ORTHO05D004401 1.3e-08 63.2 98 42.9
SalBow8G5011 Salvia bowleyana HOM05D004965 ORTHO05D004401 1.3e-08 63.2 60 50.0
Atru.chr11.1915 Acer truncatum HOM05D004965 ORTHO05D004401 1.7e-08 62.8 111 36.0
Psat2g116360 Pisum sativum HOM05D004965 ORTHO05D004401 2.2e-08 62.4 91 45.1
ATR0665G516 Amborella trichopoda HOM05D004965 ORTHO05D004401 2.9e-08 62.0 43 69.8
TWI12G0653 Tripterygium wilfordii HOM05D004965 ORTHO05D004401 2.9e-08 62.0 92 43.5
Gohir.D02G167800 Gossypium hirsutum HOM05D004965 ORTHO05D004401 5.0e-08 61.2 46 65.2
Gorai.005G188200 Gossypium raimondii HOM05D004965 ORTHO05D004401 5.0e-08 61.2 46 65.2
CANSAT01G1612 Cannabis sativa HOM05D004965 ORTHO05D004401 6.5e-08 60.8 108 38.9
Gorai.002G165000 Gossypium raimondii HOM05D004965 ORTHO05D004401 6.5e-08 60.8 99 40.4
Carub.0005s0698 Capsella rubella HOM05D009946 ORTHO05D004401 8.5e-08 60.5 85 45.9
Gohir.A01G142000 Gossypium hirsutum HOM05D004965 ORTHO05D004401 8.5e-08 60.5 99 39.4
Hund13292 Selenicereus undatus HOM05D004965 ORTHO05D004401 8.5e-08 60.5 95 37.9
DCAR_025362 Daucus carota HOM05D004965 ORTHO05D004401 1.1e-07 60.1 90 43.3
Lalb_Chr16g0382641 Lupinus albus HOM05D004965 ORTHO05D004401 1.5e-07 59.7 100 37.0
Rhsim10G0029300 Rhododendron simsii HOM05D004965 ORTHO05D004401 1.5e-07 59.7 89 46.1
CANSAT64G1053 Cannabis sativa HOM05D004965 ORTHO05D004401 1.9e-07 59.3 108 38.0
CsaV3_5G037710 Cucumis sativus L. HOM05D004965 ORTHO05D004401 1.9e-07 59.3 90 40.0
DCAR_026576 Daucus carota HOM05D004965 ORTHO05D004401 1.9e-07 59.3 99 37.4
Manes.01G193600 Manihot esculenta HOM05D004965 ORTHO05D004401 1.9e-07 59.3 84 41.7
ECA246G4714 Erigeron canadensis HOM05D004965 ORTHO05D004401 2.5e-07 58.9 89 46.1
AUR62030559 Chenopodium quinoa HOM05D068275 ORTHO05D004401 3.2e-07 58.5 99 38.4
AT3G28455 Arabidopsis thaliana HOM05D009946 ORTHO05D004401 4.2e-07 58.2 85 45.9
arahy.Tifrunner.gnm1.ann1.0GIF91 Arachis hypogaea HOM05D004965 ORTHO05D004401 4.2e-07 58.2 33 81.8
ClCG09G018520 Citrullus lanatus HOM05D006434 ORTHO05D008069 4.2e-07 58.2 100 38.0
Lju41A28T116 Lonicera japonica HOM05D004965 ORTHO05D004401 4.2e-07 58.2 85 42.4
CARHR292510 Cardamine hirsuta HOM05D009946 ORTHO05D004401 5.5e-07 57.8 85 44.7
Eucgr.J02154 Eucalyptus grandis HOM05D004965 ORTHO05D004401 5.5e-07 57.8 92 43.5
Gohir.D01G133500 Gossypium hirsutum HOM05D004965 ORTHO05D004401 5.5e-07 57.8 49 57.1
Lsat_1_v5_gn_8_161261 Lactuca sativa HOM05D004965 ORTHO05D004401 5.5e-07 57.8 50 60.0
arahy.Tifrunner.gnm1.ann1.6A0KRF Arachis hypogaea HOM05D004965 ORTHO05D004401 9.4e-07 57.0 101 40.6
arahy.Tifrunner.gnm1.ann1.E1G8VG Arachis hypogaea HOM05D004965 ORTHO05D004401 9.4e-07 57.0 101 40.6
Thhalv10005220m.g Eutrema salsugineum HOM05D009946 ORTHO05D004401 9.4e-07 57.0 84 44.0
Solyc05g006610.4 Solanum lycopersicum HOM05D004965 ORTHO05D004401 9.4e-07 57.0 37 70.3
Sopen05g002550 Solanum pennellii HOM05D004965 ORTHO05D004401 9.4e-07 57.0 37 70.3
Sabra08G0145000 Salix brachista HOM05D004965 ORTHO05D004401 1.2e-06 56.6 79 49.4
CDE04G1822 Ceratophyllum demersum HOM05D004965 ORTHO05D004401 1.6e-06 56.2 94 43.6
Medtr6g009390 Medicago truncatula HOM05D004965 ORTHO05D004401 2.1e-06 55.8 66 47.0
Sp2g17220 Schrenkiella parvula HOM05D009946 ORTHO05D004401 2.1e-06 55.8 85 45.9
PGSC0003DMG400004191 Solanum tuberosum HOM05D004965 ORTHO05D004401 2.1e-06 55.8 88 39.8
AL5G18080 Arabidopsis lyrata HOM05D009946 ORTHO05D004401 2.7e-06 55.5 85 44.7
HanXRQChr08g0209111 Helianthus annuus HOM05D004965 ORTHO05D004401 3.6e-06 55.1 29 86.2
Sed0010056 Sechium edule HOM05D031204 ORTHO05D004401 3.6e-06 55.1 95 37.9
Sc04g0008760 Simmondsia chinensis HOM05D004965 ORTHO05D004401 3.6e-06 55.1 30 83.3
SalBow1G8504 Salvia bowleyana HOM05D004965 ORTHO05D004401 4.7e-06 54.7 80 41.2
Sed0027722 Sechium edule HOM05D004965 ORTHO05D004401 4.7e-06 54.7 95 38.9
Thhalv10028314m.g Eutrema salsugineum HOM05D009946 ORTHO05D004401 6.1e-06 54.3 81 40.7
FAN17G0917 Fragaria x ananassa HOM05D004965 ORTHO05D004401 6.1e-06 54.3 91 36.3
Lsat_1_v5_gn_0_35980 Lactuca sativa HOM05D004965 ORTHO05D004401 6.1e-06 54.3 85 43.5
BcaC08g46447 Brassica carinata HOM05D010176 ORTHO05D012455 8.0e-06 53.9 83 43.4
Cpa.g.sc5.310 Carica papaya HOM05D004965 ORTHO05D004401 8.0e-06 53.9 69 43.5


User provided reference genes

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