Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR365G1242 Trochodendron aralioides HOM05D005420 ORTHO05D006524 1.2e-161 573.2 289 100.0
TAR636G0539 Trochodendron aralioides HOM05D005420 ORTHO05D006524 1.9e-132 476.1 293 85.7
Prupe.7G269700 Prunus persica HOM05D005420 ORTHO05D006524 7.1e-111 404.4 288 75.0
Ciclev10012405m.g Citrus clementina HOM05D005420 ORTHO05D006524 1.5e-105 386.7 285 72.3
MBI07_g10354_MAGBIO Magnolia biondii HOM05D005420 ORTHO05D006524 2.0e-105 386.3 286 74.1
FvH4_1g00160 Fragaria vesca HOM05D005420 ORTHO05D006524 9.9e-105 384.0 283 72.8
FAN28G0609 Fragaria x ananassa HOM05D005420 ORTHO05D006524 9.9e-105 384.0 283 72.8
MD00G1087500 Malus domestica HOM05D005420 ORTHO05D006524 3.8e-104 382.1 293 71.7
Dinv33245 Davidia involucrata HOM05D005420 ORTHO05D006524 6.4e-104 381.3 221 87.3
QL10p064332 Quercus lobata HOM05D005420 ORTHO05D006524 6.4e-104 381.3 275 72.7
FAN26G3138 Fragaria x ananassa HOM05D005420 ORTHO05D006524 8.4e-104 380.9 283 72.1
RcHm_v2.0_Chr2g0084451 Rosa chinensis HOM05D005420 ORTHO05D006524 1.2e-102 377.1 276 73.6
Thecc.05G186000 Theobroma cacao HOM05D005420 ORTHO05D006524 1.2e-102 377.1 256 77.3
Duzib177G0155 Durio zibethinus HOM05D005420 ORTHO05D006524 1.6e-102 376.7 285 71.2
CSS0022736 Camellia sinensis var. sinensis HOM05D005420 ORTHO05D006524 2.1e-102 376.3 219 86.3
Potri.013G084300 Populus trichocarpa HOM05D005420 ORTHO05D006524 2.1e-102 376.3 224 82.6
FAN23G1410 Fragaria x ananassa HOM05D005420 ORTHO05D006524 3.5e-102 375.6 283 72.1
MD15G1143300 Malus domestica HOM05D005420 ORTHO05D006524 3.5e-102 375.6 301 69.8
Atru.chr12.1712 Acer truncatum HOM05D005420 ORTHO05D006524 1.0e-101 374.0 300 68.3
CSS0017727 Camellia sinensis var. sinensis HOM05D005420 ORTHO05D006524 1.3e-101 373.6 290 71.0
Gohir.D03G071700 Gossypium hirsutum HOM05D005420 ORTHO05D006524 1.3e-101 373.6 285 70.2
Gohir.A02G106300 Gossypium hirsutum HOM05D005420 ORTHO05D006524 2.3e-101 372.9 285 70.2
Gorai.003G088300 Gossypium raimondii HOM05D005420 ORTHO05D006524 2.3e-101 372.9 285 70.2
VMungo1215G3385 Vigna mungo HOM05D005420 ORTHO05D006524 2.3e-101 372.9 285 71.9
PSO675G2924 Papaver somniferum HOM05D005420 ORTHO05D006524 3.0e-101 372.5 290 70.3
PSO732G0217 Papaver somniferum HOM05D005420 ORTHO05D006524 6.7e-101 371.3 288 72.2
Cc03_g15990 Coffea canephora HOM05D005420 ORTHO05D006524 1.5e-100 370.2 254 74.8
Glyma.17G000800 Glycine max HOM05D005420 ORTHO05D006524 1.5e-100 370.2 280 70.7
CANSAT56G1087 Cannabis sativa HOM05D005420 ORTHO05D006524 1.9e-100 369.8 273 75.5
CiPaw.01G201600 Carya illinoinensis HOM05D005420 ORTHO05D006524 2.5e-100 369.4 214 86.4
CiPaw.02G124600 Carya illinoinensis HOM05D005420 ORTHO05D006524 2.5e-100 369.4 293 69.6
Glyma.07G273700 Glycine max HOM05D005420 ORTHO05D006524 2.5e-100 369.4 280 70.4
Sabra13G0078900 Salix brachista HOM05D005420 ORTHO05D006524 2.5e-100 369.4 224 81.7
arahy.Tifrunner.gnm1.ann1.D6NWCJ Arachis hypogaea HOM05D005420 ORTHO05D006524 7.4e-100 367.9 228 81.6
arahy.Tifrunner.gnm1.ann1.EMGW5K Arachis hypogaea HOM05D005420 ORTHO05D006524 7.4e-100 367.9 228 81.6
MSTRG.24552 Avicennia marina HOM05D005420 ORTHO05D006524 9.6e-100 367.5 256 73.8
Cfa008513 Carpinus fangiana HOM05D005420 ORTHO05D006524 1.3e-99 367.1 214 86.0
GSVIVG01038249001 Vitis vinifera HOM05D005420 ORTHO05D006524 1.6e-99 366.7 214 87.9
ATR0743G098 Amborella trichopoda HOM05D005420 ORTHO05D006524 2.8e-99 365.9 291 70.4
Manes.12G003300 Manihot esculenta HOM05D005420 ORTHO05D006524 2.8e-99 365.9 223 82.5
Phvul.003G074600 Phaseolus vulgaris HOM05D005420 ORTHO05D006524 2.8e-99 365.9 281 69.4
Eucgr.H01455 Eucalyptus grandis HOM05D005420 ORTHO05D006524 3.7e-99 365.5 288 67.7
ClCG09G014850 Citrullus lanatus HOM05D005420 ORTHO05D006524 2.4e-98 362.8 260 74.6
Rhsim09G0003700 Rhododendron simsii HOM05D005420 ORTHO05D006524 1.2e-97 360.5 264 73.1
Nitab4.5_0008205g0010 Nicotiana tabacum HOM05D005420 ORTHO05D006524 1.5e-97 360.1 267 71.5
DCAR_005460 Daucus carota HOM05D005420 ORTHO05D006524 2.0e-97 359.8 263 75.7
ECA248G1232 Erigeron canadensis HOM05D005420 ORTHO05D006524 3.4e-97 359.0 233 80.3
Lj4g0016379 Lotus japonicus HOM05D005420 ORTHO05D006524 4.5e-97 358.6 258 73.6
Sed0010932 Sechium edule HOM05D005420 ORTHO05D006524 5.8e-97 358.2 285 68.4
CDE09G0694 Ceratophyllum demersum HOM05D005420 ORTHO05D006524 7.6e-97 357.8 291 67.4
SalBow3G4646 Salvia bowleyana HOM05D005420 ORTHO05D006524 1.0e-96 357.5 252 74.2
Nitab4.5_0000013g0040 Nicotiana tabacum HOM05D005420 ORTHO05D006524 2.2e-96 356.3 240 75.4
vmacro00721 Vaccinium macrocarpon HOM05D005420 ORTHO05D006524 2.2e-96 356.3 227 80.6
Peaxi162Scf01205g00032 Petunia axillaris HOM05D005420 ORTHO05D006524 2.9e-96 355.9 271 70.5
TWI36G0345 Tripterygium wilfordii HOM05D005420 ORTHO05D006524 2.9e-96 355.9 214 84.1
CsaV3_7G022350 Cucumis sativus L. HOM05D005420 ORTHO05D006524 3.8e-96 355.5 262 74.0
Aqoxy1G01859 Aquilegia oxysepala HOM05D005420 ORTHO05D006524 4.9e-96 355.1 279 71.3
HanXRQChr11g0343501 Helianthus annuus HOM05D005420 ORTHO05D006524 4.9e-96 355.1 242 78.1
AUR62023710 Chenopodium quinoa HOM05D005420 ORTHO05D006524 6.5e-96 354.8 214 83.6
GSVIVG01026140001 Vitis vinifera HOM05D005420 ORTHO05D006524 1.4e-95 353.6 214 83.6
AUR62002482 Chenopodium quinoa HOM05D005420 ORTHO05D006524 2.5e-95 352.8 214 83.6
HanXRQChr01g0023651 Helianthus annuus HOM05D005420 ORTHO05D006524 9.3e-95 350.9 247 75.7
Lsat_1_v5_gn_1_76981 Lactuca sativa HOM05D005420 ORTHO05D006524 9.3e-95 350.9 220 80.0
Ah.07g203200 Amaranthus hybridus HOM05D005420 ORTHO05D006524 1.2e-94 350.5 265 70.6
EL10Ac3g06165 Beta vulgaris HOM05D005420 ORTHO05D006524 1.2e-94 350.5 214 82.7
Lj6C285T2 Lonicera japonica HOM05D005420 ORTHO05D006524 1.2e-94 350.5 197 89.8
AT2G43945 Arabidopsis thaliana HOM05D005420 ORTHO05D006524 1.6e-94 350.1 289 68.2
Solyc08g015620.3 Solanum lycopersicum HOM05D005420 ORTHO05D006524 1.6e-94 350.1 289 66.1
Sopen08g005610 Solanum pennellii HOM05D005420 ORTHO05D006524 1.6e-94 350.1 289 66.1
Actinidia34566 Actinidia chinensis HOM05D005420 ORTHO05D006524 6.0e-94 348.2 274 68.6
Cpa.g.sc151.6 Carica papaya HOM05D005420 ORTHO05D006524 1.3e-93 347.1 207 85.0
PGR119G0486 Punica granatum HOM05D005420 ORTHO05D006524 1.8e-93 346.7 195 89.2
A03p24600 Brassica napus HOM05D005420 ORTHO05D006524 3.0e-93 345.9 285 67.0
Os01g0338600 Oryza sativa ssp. japonica HOM05D005420 ORTHO05D006524 3.0e-93 345.9 219 79.9
Thhalv10001571m.g Eutrema salsugineum HOM05D005420 ORTHO05D006524 3.9e-93 345.5 290 66.6
C03p29330 Brassica napus HOM05D005420 ORTHO05D006524 6.7e-93 344.7 293 66.6
BolC3t15280H Brassica oleracea HOM05D005420 ORTHO05D006524 6.7e-93 344.7 293 66.6
Duzib128G1088 Durio zibethinus HOM05D005420 ORTHO05D006524 6.7e-93 344.7 197 86.8
Migut.G00921 Erythranthe guttata HOM05D005420 ORTHO05D006524 6.7e-93 344.7 268 69.0
TWI36G1305 Tripterygium wilfordii HOM05D005420 ORTHO05D006524 1.1e-92 344.0 274 70.1
HPP92_024700 Vanilla planifolia HOM05D005420 ORTHO05D006524 2.5e-92 342.8 215 79.1
Aa31LG1G25640 Aethionema arabicum HOM05D005420 ORTHO05D006524 3.3e-92 342.4 215 79.5
unitig_27.g25143 Utricularia gibba HOM05D005420 ORTHO05D006524 7.4e-92 341.3 241 72.2
BraA03t11665Z Brassica rapa HOM05D005420 ORTHO05D006524 9.7e-92 340.9 286 65.4
Psat4g001320 Pisum sativum HOM05D005420 ORTHO05D006524 9.7e-92 340.9 259 71.0
AL4G42820 Arabidopsis lyrata HOM05D005420 ORTHO05D006524 1.6e-91 340.1 292 65.1
Actinidia18399 Actinidia chinensis HOM05D005420 ORTHO05D006524 4.8e-91 338.6 257 70.8
Carub.0005s2660 Capsella rubella HOM05D005420 ORTHO05D006524 4.8e-91 338.6 291 63.9
BcaB06g29350 Brassica carinata HOM05D005420 ORTHO05D006524 8.2e-91 337.8 242 74.4
Carub.0004s2651 Capsella rubella HOM05D005420 ORTHO05D006524 8.2e-91 337.8 286 65.7
Nn7g37463 Nelumbo nucifera HOM05D005420 ORTHO05D006524 8.2e-91 337.8 266 71.1
THA.LOC104802345 Tarenaya hassleriana HOM05D005420 ORTHO05D006524 1.8e-90 336.7 215 80.0
unitig_699.g19464 Utricularia gibba HOM05D005420 ORTHO05D006524 4.1e-90 335.5 193 86.0
BraA05t19397Z Brassica rapa HOM05D005420 ORTHO05D006524 5.3e-90 335.1 288 67.0
BcaC02g12350 Brassica carinata HOM05D005420 ORTHO05D006524 6.9e-90 334.7 286 65.7
C04p04880 Brassica napus HOM05D005420 ORTHO05D006524 9.0e-90 334.3 286 65.7
AT3G59870 Arabidopsis thaliana HOM05D005420 ORTHO05D006524 3.4e-89 332.4 216 77.8
BolC4t22118H Brassica oleracea HOM05D005420 ORTHO05D006524 3.4e-89 332.4 286 66.1
THA.LOC104804283 Tarenaya hassleriana HOM05D005420 ORTHO05D006524 3.4e-89 332.4 215 78.1
A05p04100 Brassica napus HOM05D005420 ORTHO05D006524 5.9e-89 331.6 289 65.7
CARHR139120 Cardamine hirsuta HOM05D005420 ORTHO05D006524 5.9e-89 331.6 289 64.0
SGA_v2.0_scaffold12G06218 Striga asiatica HOM05D005420 ORTHO05D006524 2.2e-88 329.7 253 70.8
Aa31LG10G14100 Aethionema arabicum HOM05D005420 ORTHO05D006524 3.8e-88 328.9 291 63.6
BcaB02g08884 Brassica carinata HOM05D005420 ORTHO05D006524 1.4e-87 327.0 200 82.0
Zm00001eb159810 Zea mays HOM05D005420 ORTHO05D006524 3.2e-87 325.9 214 78.5
Nn3g18334 Nelumbo nucifera HOM05D005420 ORTHO05D006524 4.6e-86 322.0 252 71.8
Dinv24753 Davidia involucrata HOM05D005420 ORTHO05D006524 6.1e-86 321.6 248 70.6
Sp4g26040 Schrenkiella parvula HOM05D005420 ORTHO05D006524 7.9e-86 321.2 282 64.2
Pp3c24_16460 Physcomitrium patens HOM05D005420 ORTHO05D006524 9.7e-84 314.3 210 77.1
Pp3c8_21410 Physcomitrium patens HOM05D005420 ORTHO05D006524 1.4e-82 310.5 235 70.6
SMO367G0538 Selaginella moellendorffii HOM05D005420 ORTHO05D006524 6.9e-82 308.1 185 82.7
Mapoly0136s0029 Marchantia polymorpha HOM05D005420 ORTHO05D006524 9.1e-82 307.8 185 84.3
SEGI_26827 Sequoiadendron giganteum HOM05D005420 ORTHO05D006524 2.6e-81 306.2 294 60.9
Haze_11131 Corylus avellana HOM05D005420 ORTHO05D006524 2.9e-80 302.8 344 52.3
TPR.G6015 Trifolium pratense HOM05D005420 ORTHO05D006524 6.1e-78 295.0 259 64.5
Migut.N03031 Erythranthe guttata HOM05D005420 ORTHO05D006524 4.4e-76 288.9 272 62.1
Manes.13G003200 Manihot esculenta HOM05D005420 ORTHO05D006524 2.0e-73 280.0 157 90.4
Sc25g0003040 Simmondsia chinensis HOM05D005420 ORTHO05D006524 8.5e-72 274.6 206 69.4
Hund22588 Selenicereus undatus HOM05D005420 ORTHO05D006524 5.5e-71 271.9 236 66.1
Medtr4g134910 Medicago truncatula HOM05D005420 ORTHO05D006524 2.0e-65 253.4 156 82.7
Lalb_Chr18g0044961 Lupinus albus HOM05D005420 ORTHO05D006524 7.7e-65 251.5 134 94.8
MCO05G102 Micromonas commoda HOM05D005420 ORTHO05D006524 1.5e-63 247.3 160 75.0
Cre16.g676450 Chlamydomonas reinhardtii HOM05D005420 ORTHO05D006524 6.1e-62 241.9 192 65.1
Zm00001eb356860 Zea mays HOM05D005420 ORTHO05D006524 1.4e-61 240.7 266 53.4
Oeu022910.1 Olea europaea HOM05D005420 ORTHO05D006524 1.4e-58 230.7 135 85.2
Atru.chr12.1711 Acer truncatum HOM05D005420 ORTHO05D006524 1.8e-58 230.3 193 67.9
PRCOL_00006877 Prasinoderma coloniale HOM05D005420 ORTHO05D006524 1.8e-58 230.3 160 71.2
Ca_13540_v3 Cicer arietinum L. HOM05D005420 ORTHO05D006524 5.3e-58 228.8 234 58.1
AagrBONN_evm.TU.Sc2ySwM_228.1821 Anthoceros agrestis HOM05D005420 ORTHO05D006524 1.8e-45 187.2 120 78.3
CDE02G3676 Ceratophyllum demersum HOM05D005420 ORTHO05D006524 7.3e-39 165.2 223 48.4
MBI07_g42072_MAGBIO Magnolia biondii HOM05D005420 ORTHO05D006524 1.2e-38 164.5 89 93.3
Sed0016168 Sechium edule HOM05D005420 ORTHO05D006524 1.0e-37 161.4 90 92.2
Eucgr.L00810 Eucalyptus grandis HOM05D005420 ORTHO05D006524 1.6e-33 147.5 173 48.6
Pp3c20_1670 Physcomitrium patens HOM05D005420 ORTHO05D006524 4.6e-33 146.0 180 48.3
Eucgr.H01440 Eucalyptus grandis HOM05D005420 ORTHO05D006524 6.8e-29 132.1 173 45.1
MSTRG.9265 Avicennia marina HOM05D005420 ORTHO05D006524 7.3e-23 112.1 85 65.9
Lsat_1_v5_gn_1_75001 Lactuca sativa HOM05D005420 ORTHO05D006524 9.5e-23 111.7 78 70.5
Lsat_1_v5_gn_5_160100 Lactuca sativa HOM05D005420 ORTHO05D006524 2.8e-22 110.2 78 67.9
CBR_g10867 Chara braunii HOM05D005420 ORTHO05D006524 5.4e-18 95.9 85 61.2
Sed0003231 Sechium edule HOM05D005420 ORTHO05D006524 8.1e-14 82.0 117 43.6
Lalb_Chr18g0044971 Lupinus albus HOM05D005420 ORTHO05D006524 2.1e-09 67.4 105 41.0


User provided reference genes

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