Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR365G1100 Trochodendron aralioides HOM05D004056 ORTHO05D004894 6.3e-143 510.8 257 100.0
TAR636G0170 Trochodendron aralioides HOM05D004056 ORTHO05D004894 5.6e-83 311.6 217 76.5
Nn1g07984 Nelumbo nucifera HOM05D004056 ORTHO05D004894 7.8e-77 291.2 220 71.4
Dinv00576 Davidia involucrata HOM05D004056 ORTHO05D004894 3.6e-74 282.3 216 70.8
TAR362G0687 Trochodendron aralioides HOM05D004056 ORTHO05D004894 9.9e-72 274.2 220 68.2
Rhsim01G0253300 Rhododendron simsii HOM05D004056 ORTHO05D004894 2.4e-70 269.6 220 65.9
Hma1.2p1_0226F.1_g095370 Hydrangea macrophylla HOM05D004056 ORTHO05D004894 3.2e-70 269.2 221 66.1
Rhsim13G0047900 Rhododendron simsii HOM05D004056 ORTHO05D004894 6.0e-69 265.0 224 64.3
MBI07_g18993_MAGBIO Magnolia biondii HOM05D004056 ORTHO05D004894 3.9e-68 262.3 223 65.0
vmacro14736 Vaccinium macrocarpon HOM05D004056 ORTHO05D004894 6.6e-68 261.5 219 63.9
Dinv12647 Davidia involucrata HOM05D004056 ORTHO05D004894 2.5e-67 259.6 183 75.4
Lj1A89T71 Lonicera japonica HOM05D004056 ORTHO05D004894 4.7e-66 255.4 218 62.8
Potri.002G246100 Populus trichocarpa HOM05D004056 ORTHO05D004894 1.8e-65 253.4 223 62.3
Aqoxy5G00024 Aquilegia oxysepala HOM05D004056 ORTHO05D004894 2.4e-65 253.1 223 64.6
Thecc.01G219700 Theobroma cacao HOM05D004056 ORTHO05D004894 2.4e-65 253.1 223 62.3
Duzib138G1417 Durio zibethinus HOM05D004056 ORTHO05D004894 3.1e-65 252.7 223 62.3
Duzib211G0551 Durio zibethinus HOM05D004056 ORTHO05D004894 6.9e-65 251.5 223 61.9
Prupe.8G198700 Prunus persica HOM05D004056 ORTHO05D004894 8.9e-65 251.1 220 62.7
vmacro02784 Vaccinium macrocarpon HOM05D004056 ORTHO05D004894 1.5e-64 250.4 208 63.5
COL.COLO4_34102 Corchorus olitorius HOM05D004056 ORTHO05D004894 3.4e-64 249.2 223 60.5
Sabra02G0187400 Salix brachista HOM05D004056 ORTHO05D004894 5.8e-64 248.4 223 61.0
TAR633G1317 Trochodendron aralioides HOM05D004056 ORTHO05D004894 9.9e-64 247.7 173 76.9
Duzib133G0422 Durio zibethinus HOM05D004056 ORTHO05D004894 8.4e-63 244.6 223 60.1
Actinidia30050 Actinidia chinensis HOM05D004056 ORTHO05D004894 7.1e-62 241.5 220 60.5
Actinidia39428 Actinidia chinensis HOM05D004056 ORTHO05D004894 9.3e-62 241.1 220 59.5
Cfa004161 Carpinus fangiana HOM05D004056 ORTHO05D004894 3.5e-61 239.2 220 62.3
Ciclev10021891m.g Citrus clementina HOM05D004056 ORTHO05D004894 3.5e-61 239.2 235 58.3
TWI18G1219 Tripterygium wilfordii HOM05D004056 ORTHO05D004894 3.5e-61 239.2 223 58.7
CDE09G0677 Ceratophyllum demersum HOM05D004056 ORTHO05D004894 2.3e-60 236.5 220 61.8
Gorai.001G188300 Gossypium raimondii HOM05D004056 ORTHO05D004894 6.6e-60 235.0 224 59.4
Gohir.D07G164400 Gossypium hirsutum HOM05D004056 ORTHO05D004894 8.7e-60 234.6 224 58.9
DCAR_012671 Daucus carota HOM05D004056 ORTHO05D004894 1.1e-59 234.2 215 60.0
CiPaw.01G050800 Carya illinoinensis HOM05D004056 ORTHO05D004894 1.5e-59 233.8 220 58.6
Oeu051533.1 Olea europaea HOM05D004056 ORTHO05D004894 1.9e-59 233.4 215 60.9
Manes.13G049600 Manihot esculenta HOM05D004056 ORTHO05D004894 2.5e-59 233.0 226 58.4
TWI36G0821 Tripterygium wilfordii HOM05D004056 ORTHO05D004894 4.3e-59 232.3 224 58.0
Dinv19168 Davidia involucrata HOM05D004056 ORTHO05D004894 9.6e-59 231.1 181 68.5
Atru.chr6.1427 Acer truncatum HOM05D004056 ORTHO05D004894 1.3e-58 230.7 229 57.6
Gohir.A07G093100 Gossypium hirsutum HOM05D004056 ORTHO05D004894 2.8e-58 229.6 220 60.5
MD10G1159600 Malus domestica HOM05D004056 ORTHO05D004894 2.8e-58 229.6 222 59.5
Solyc09g059510.3 Solanum lycopersicum HOM05D004056 ORTHO05D004894 3.6e-58 229.2 228 57.0
CiPaw.02G023900 Carya illinoinensis HOM05D004056 ORTHO05D004894 4.8e-58 228.8 216 59.3
GSVIVG01003250001 Vitis vinifera HOM05D004056 ORTHO05D004894 8.1e-58 228.0 148 79.7
CAN.G5.40 Capsicum annuum HOM05D004056 ORTHO05D004894 1.1e-57 227.6 225 57.8
Gorai.007G156300 Gossypium raimondii HOM05D004056 ORTHO05D004894 1.1e-57 227.6 224 58.5
Cpa.g.sc21.106 Carica papaya HOM05D004056 ORTHO05D004894 2.4e-57 226.5 237 53.6
Gohir.D07G097700 Gossypium hirsutum HOM05D004056 ORTHO05D004894 2.4e-57 226.5 220 60.0
Gorai.001G105100 Gossypium raimondii HOM05D004056 ORTHO05D004894 4.0e-57 225.7 220 59.5
Manes.12G047500 Manihot esculenta HOM05D004056 ORTHO05D004894 4.0e-57 225.7 223 56.5
ATR0561G205 Amborella trichopoda HOM05D004056 ORTHO05D004894 5.3e-57 225.3 194 64.4
Haze_15250 Corylus avellana HOM05D004056 ORTHO05D004894 5.3e-57 225.3 168 71.4
Gohir.A11G139600 Gossypium hirsutum HOM05D004056 ORTHO05D004894 5.3e-57 225.3 224 58.0
Nitab4.5_0001161g0130 Nicotiana tabacum HOM05D004056 ORTHO05D004894 6.9e-57 224.9 230 56.5
CDE02G4431 Ceratophyllum demersum HOM05D004056 ORTHO05D004894 2.6e-56 223.0 171 73.7
Gohir.D11G145800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 3.4e-56 222.6 224 58.0
Peaxi162Scf00068g00224 Petunia axillaris HOM05D004056 ORTHO05D004894 3.4e-56 222.6 220 58.2
Eucgr.K02136 Eucalyptus grandis HOM05D004056 ORTHO05D004894 7.6e-56 221.5 221 57.9
Gohir.A07G198800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 3.8e-55 219.2 195 62.6
MSTRG.20969 Avicennia marina HOM05D004056 ORTHO05D004894 4.9e-55 218.8 215 58.6
Cc01_g16690 Coffea canephora HOM05D004056 ORTHO05D004894 4.9e-55 218.8 215 58.1
Oeu057860.1 Olea europaea HOM05D004056 ORTHO05D004894 1.1e-54 217.6 215 57.7
Gohir.A07G160800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 1.4e-54 217.2 183 65.6
Gohir.D07G205300 Gossypium hirsutum HOM05D004056 ORTHO05D004894 1.9e-54 216.9 195 61.5
Gorai.001G231300 Gossypium raimondii HOM05D004056 ORTHO05D004894 1.9e-54 216.9 195 61.5
SalBow6G2821 Salvia bowleyana HOM05D004056 ORTHO05D004894 7.1e-54 214.9 188 63.3
SalBow6G5583 Salvia bowleyana HOM05D004056 ORTHO05D004894 7.1e-54 214.9 188 63.3
MSTRG.12776 Avicennia marina HOM05D004056 ORTHO05D004894 1.2e-53 214.2 218 56.0
RcHm_v2.0_Chr6g0284081 Rosa chinensis HOM05D004056 ORTHO05D004894 2.1e-53 213.4 221 57.5
MSTRG.18836 Avicennia marina HOM05D004056 ORTHO05D004894 4.6e-53 212.2 215 56.3
Nitab4.5_0000045g0550 Nicotiana tabacum HOM05D004056 ORTHO05D004894 6.0e-53 211.8 229 54.1
VMungo1383G1286 Vigna mungo HOM05D004056 ORTHO05D004894 6.0e-53 211.8 219 56.2
MD05G1171400 Malus domestica HOM05D004056 ORTHO05D004894 7.9e-53 211.5 222 56.3
QL09p051117 Quercus lobata HOM05D004056 ORTHO05D004894 7.9e-53 211.5 142 74.6
FvH4_2g18520 Fragaria vesca HOM05D004056 ORTHO05D004894 1.0e-52 211.1 221 56.1
PGSC0003DMG400017485 Solanum tuberosum HOM05D004056 ORTHO05D004894 1.0e-52 211.1 227 54.6
CANSAT01G2574 Cannabis sativa HOM05D004056 ORTHO05D004894 1.8e-52 210.3 221 56.6
FAN24G0472 Fragaria x ananassa HOM05D004056 ORTHO05D008391 1.8e-52 210.3 229 54.6
Phvul.008G131500 Phaseolus vulgaris HOM05D004056 ORTHO05D004894 1.8e-52 210.3 221 55.7
HPP92_006215 Vanilla planifolia HOM05D004056 ORTHO05D004894 1.8e-52 210.3 220 55.9
Lalb_Chr19g0125861 Lupinus albus HOM05D004056 ORTHO05D004894 3.9e-52 209.1 223 55.2
HPP92_024244 Vanilla planifolia HOM05D004056 ORTHO05D004894 5.1e-52 208.8 214 58.4
HanXRQChr01g0015301 Helianthus annuus HOM05D004056 ORTHO05D004894 8.7e-52 208.0 218 56.9
FAN27G1039 Fragaria x ananassa HOM05D004056 ORTHO05D004894 1.1e-51 207.6 226 55.8
arahy.Tifrunner.gnm1.ann1.8LB9ZD Arachis hypogaea HOM05D004056 ORTHO05D004894 1.9e-51 206.8 226 54.4
MD10G1039600 Malus domestica HOM05D001916 ORTHO05D004894 4.3e-51 205.7 193 60.1
Medtr7g055857 Medicago truncatula HOM05D004056 ORTHO05D004894 7.4e-51 204.9 219 55.7
Psat3g149240 Pisum sativum HOM05D004056 ORTHO05D004894 4.8e-50 202.2 219 54.3
DCAR_018636 Daucus carota HOM05D004056 ORTHO05D004894 6.2e-50 201.8 217 51.2
arahy.Tifrunner.gnm1.ann1.2MPX2Y Arachis hypogaea HOM05D004056 ORTHO05D004894 2.4e-49 199.9 265 46.8
Migut.D02503 Erythranthe guttata HOM05D004056 ORTHO05D004894 4.0e-49 199.1 199 57.8
Sc17g0002100 Simmondsia chinensis HOM05D004056 ORTHO05D004894 5.3e-49 198.7 220 51.4
SGA_v2.0_scaffold18G08335 Striga asiatica HOM05D004056 ORTHO05D004894 6.9e-49 198.4 188 62.8
Lsat_1_v5_gn_8_89300 Lactuca sativa HOM05D004056 ORTHO05D004894 9.0e-49 198.0 215 54.9
Lj3g0018087 Lotus japonicus HOM05D004056 ORTHO05D004894 1.5e-48 197.2 228 54.4
FAN15G2777 Fragaria x ananassa HOM05D004056 ORTHO05D008391 3.4e-48 196.1 213 54.9
Sopen09g022670 Solanum pennellii HOM05D004056 ORTHO05D004894 5.8e-48 195.3 242 50.0
Ca_23224_v3 Cicer arietinum L. HOM05D004056 ORTHO05D004894 1.4e-46 190.7 217 53.5
Migut.N00633 Erythranthe guttata HOM05D004056 ORTHO05D004894 4.2e-46 189.1 178 59.0
EL10Ac7g17907 Beta vulgaris HOM05D004056 ORTHO05D004894 5.5e-46 188.7 207 52.2
Lsat_1_v5_gn_5_180841 Lactuca sativa HOM05D004056 ORTHO05D004894 5.5e-46 188.7 220 55.5
TPR.G11183 Trifolium pratense HOM05D004056 ORTHO05D004894 2.1e-45 186.8 227 50.2
Os02g0499000 Oryza sativa ssp. japonica HOM05D004056 ORTHO05D004894 3.5e-45 186.0 217 54.4
Medtr8g012655 Medicago truncatula HOM05D004056 ORTHO05D004894 4.6e-45 185.7 229 51.1
unitig_736.g22344 Utricularia gibba HOM05D004056 ORTHO05D004894 7.9e-45 184.9 156 64.7
Lj1g0006098 Lotus japonicus HOM05D004056 ORTHO05D004894 1.3e-44 184.1 217 50.7
Hund05580 Selenicereus undatus HOM05D004056 ORTHO05D004894 1.5e-43 180.6 220 50.5
Zm00001eb241420 Zea mays HOM05D004056 ORTHO05D004894 1.5e-43 180.6 216 51.4
THA.LOC104804624 Tarenaya hassleriana HOM05D004056 ORTHO05D004894 1.9e-43 180.3 180 56.1
ECA248G0601 Erigeron canadensis HOM05D004056 ORTHO05D004894 9.6e-43 177.9 205 53.7
PGR044G2021 Punica granatum HOM05D004056 ORTHO05D004894 9.6e-43 177.9 215 50.7
ClCG07G002100 Citrullus lanatus HOM05D004056 ORTHO05D004894 1.3e-42 177.6 228 51.3
Sed0026975 Sechium edule HOM05D004056 ORTHO05D004894 1.6e-42 177.2 213 48.8
unitig_26.g9438 Utricularia gibba HOM05D004056 ORTHO05D004894 1.6e-42 177.2 143 69.2
Ca_03473_v3 Cicer arietinum L. HOM05D004056 ORTHO05D004894 3.7e-42 176.0 134 69.4
CsaV3_7G026330 Cucumis sativus L. HOM05D004056 ORTHO05D004894 3.7e-42 176.0 183 55.2
PSO063G1373 Papaver somniferum HOM05D004056 ORTHO05D004894 3.7e-42 176.0 203 53.2
Glyma.08G348300 Glycine max HOM05D004056 ORTHO05D004894 4.8e-42 175.6 121 72.7
HanXRQChr04g0108001 Helianthus annuus HOM05D004056 ORTHO05D004894 4.8e-42 175.6 224 49.6
VMungo0331G1907 Vigna mungo HOM05D004056 ORTHO05D004894 1.4e-41 174.1 134 68.7
unitig_899.g15016 Utricularia gibba HOM05D004056 ORTHO05D004894 1.8e-41 173.7 197 53.3
PSO017G4055 Papaver somniferum HOM05D004056 ORTHO05D004894 2.4e-41 173.3 186 54.8
AUR62016545 Chenopodium quinoa HOM05D004056 ORTHO05D004894 3.1e-41 172.9 217 50.7
Glyma.18G159900 Glycine max HOM05D004056 ORTHO05D004894 5.3e-41 172.2 115 73.9
Aa31LG9G5020 Aethionema arabicum HOM05D004056 ORTHO05D004894 9.0e-41 171.4 150 62.7
Hund18433 Selenicereus undatus HOM05D004056 ORTHO05D004894 9.0e-41 171.4 196 45.9
MELO3C022718.2 Cucumis melo HOM05D004056 ORTHO05D004894 2.6e-40 169.9 185 54.6
Sed0007046 Sechium edule HOM05D004056 ORTHO05D004894 2.6e-40 169.9 219 49.8
TPR.G6483 Trifolium pratense HOM05D004056 ORTHO05D004894 2.6e-40 169.9 133 69.2
CARHR218370 Cardamine hirsuta HOM05D004056 ORTHO05D004894 5.8e-40 168.7 139 65.5
ClCG09G008620 Citrullus lanatus HOM05D004056 ORTHO05D004894 7.6e-40 168.3 218 47.7
AUR62001134 Chenopodium quinoa HOM05D004056 ORTHO05D004894 1.0e-39 167.9 168 57.7
BcaB04g17724 Brassica carinata HOM05D004056 ORTHO05D004894 1.3e-39 167.5 150 62.0
CsaV3_3G030040 Cucumis sativus L. HOM05D004056 ORTHO05D004894 1.3e-39 167.5 183 54.1
Thhalv10026242m.g Eutrema salsugineum HOM05D004056 ORTHO05D004894 2.2e-39 166.8 163 58.3
Sp7g10210 Schrenkiella parvula HOM05D004056 ORTHO05D004894 1.4e-38 164.1 148 61.5
C08p08780 Brassica napus HOM05D004056 ORTHO05D004894 2.5e-38 163.3 127 66.9
unitig_749.g13591 Utricularia gibba HOM05D004056 ORTHO05D004894 2.5e-38 163.3 140 62.9
BcaC07g37403 Brassica carinata HOM05D004056 ORTHO05D004894 5.5e-38 162.2 127 66.1
BolC8t47725H Brassica oleracea HOM05D004056 ORTHO05D004894 5.5e-38 162.2 127 66.1
BraA08t32730Z Brassica rapa HOM05D004056 ORTHO05D004894 5.5e-38 162.2 134 64.2
A08p07180 Brassica napus HOM05D004056 ORTHO05D004894 1.6e-37 160.6 129 65.1
Sed0002122 Sechium edule HOM05D004056 ORTHO05D004894 2.7e-37 159.8 144 61.1
AT4G13040 Arabidopsis thaliana HOM05D004056 ORTHO05D004894 2.3e-36 156.8 112 69.6
Pp3c6_9830 Physcomitrium patens HOM05D004056 ORTHO05D004894 2.3e-36 156.8 104 71.2
SMO172G0031 Selaginella moellendorffii HOM05D004056 ORTHO05D004894 2.3e-36 156.8 113 64.6
AL9U11310 Arabidopsis lyrata HOM05D004056 ORTHO05D004894 5.1e-36 155.6 133 64.7
Pp3c5_19550 Physcomitrium patens HOM05D004056 ORTHO05D004894 9.7e-35 151.4 104 71.2
unitig_699.g19750 Utricularia gibba HOM05D004056 ORTHO05D004894 9.7e-35 151.4 106 68.9
MELO3C028860.2 Cucumis melo HOM05D004056 ORTHO05D004894 4.8e-34 149.1 246 41.1
ECA236G1380 Erigeron canadensis HOM05D004056 ORTHO05D004894 2.2e-31 140.2 120 61.7
Ah.08g214620 Amaranthus hybridus HOM05D004056 ORTHO05D004894 6.5e-31 138.7 157 53.5
C08p08770 Brassica napus HOM05D004056 ORTHO05D004894 7.2e-30 135.2 84 77.4
BolC8t47724H Brassica oleracea HOM05D004056 ORTHO05D004894 7.2e-30 135.2 84 77.4
THA.LOC104808796 Tarenaya hassleriana HOM05D004056 ORTHO05D004894 1.0e-28 131.3 118 61.0
HanXRQChr08g0235681 Helianthus annuus HOM05D004056 ORTHO05D004894 8.7e-28 128.3 79 74.7
CSS0004822 Camellia sinensis var. sinensis HOM05D004056 ORTHO05D004894 2.2e-26 123.6 83 74.7
SMO361G0763 Selaginella moellendorffii HOM05D004056 ORTHO05D004894 3.7e-26 122.9 107 59.8
Psat4g203800 Pisum sativum HOM05D004056 ORTHO05D004894 7.7e-24 115.2 130 53.1
SGA_v2.0_scaffold6G03510 Striga asiatica HOM05D004056 ORTHO05D004894 1.3e-23 114.4 188 44.1
CSS0045016 Camellia sinensis var. sinensis HOM05D000011 ORTHO05D000018 4.2e-22 109.4 154 43.5
Carub.0007s2973 Capsella rubella HOM05D004056 ORTHO05D004894 5.1e-20 102.4 88 64.8
CBR_g38383 Chara braunii HOM05D004056 ORTHO05D004894 1.1e-14 84.7 93 45.2
HPP92_024205 Vanilla planifolia HOM05D004056 ORTHO05D004894 1.9e-14 84.0 214 35.5
RcHm_v2.0_Chr3g0472871 Rosa chinensis HOM05D004056 ORTHO05D004894 2.8e-10 70.1 40 77.5
Pp3c4_8660 Physcomitrium patens HOM05D004056 ORTHO05D004504 4.8e-10 69.3 79 45.6
Pp3c13_22780 Physcomitrium patens HOM05D004056 ORTHO05D004504 1.8e-09 67.4 80 43.8
HanXRQChr12g0358981 Helianthus annuus HOM05D004056 ORTHO05D004894 1.0e-07 61.6 41 68.3


User provided reference genes

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