Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR365G1036 Trochodendron aralioides HOM05D004840 ORTHO05D005751 7.6e-169 597.0 294 100.0
TAR636G2597 Trochodendron aralioides HOM05D004840 ORTHO05D005751 2.8e-139 498.8 294 83.7
Nn3g21515 Nelumbo nucifera HOM05D004840 ORTHO05D005751 2.5e-127 459.1 294 75.9
Dinv30826 Davidia involucrata HOM05D004840 ORTHO05D005751 1.3e-123 446.8 291 75.3
Dinv40351 Davidia involucrata HOM05D004840 ORTHO05D005751 1.7e-123 446.4 291 75.6
MBI18_g24866_MAGBIO Magnolia biondii HOM05D004840 ORTHO05D005751 3.1e-122 442.2 296 74.7
GSVIVG01031181001 Vitis vinifera HOM05D004840 ORTHO05D005751 1.0e-117 427.2 290 72.4
Thecc.05G314300 Theobroma cacao HOM05D004840 ORTHO05D005751 4.0e-117 425.2 294 71.1
Aqoxy5G00762 Aquilegia oxysepala HOM05D004840 ORTHO05D005751 6.8e-117 424.5 294 71.8
CSS0026736 Camellia sinensis var. sinensis HOM05D004840 ORTHO05D005751 2.6e-116 422.5 290 72.8
Actinidia16825 Actinidia chinensis HOM05D004840 ORTHO05D005751 4.4e-116 421.8 292 71.6
Duzib177G0371 Durio zibethinus HOM05D004840 ORTHO05D005751 9.8e-116 420.6 295 71.5
Cfa006640 Carpinus fangiana HOM05D004840 ORTHO05D005751 1.3e-115 420.2 295 70.2
QL03p019896 Quercus lobata HOM05D004840 ORTHO05D005751 4.8e-115 418.3 294 70.1
Gorai.004G239300 Gossypium raimondii HOM05D004840 ORTHO05D005751 4.1e-114 415.2 294 70.1
Gohir.D08G225300 Gossypium hirsutum HOM05D004840 ORTHO05D005751 1.6e-113 413.3 294 69.7
Rhsim07G0191000 Rhododendron simsii HOM05D004840 ORTHO05D005751 2.0e-113 412.9 285 71.6
Ciclev10002011m.g Citrus clementina HOM05D004840 ORTHO05D005751 2.7e-113 412.5 287 70.4
Gohir.A08G208500 Gossypium hirsutum HOM05D004840 ORTHO05D005751 5.9e-113 411.4 294 69.7
Potri.005G024200 Populus trichocarpa HOM05D004840 ORTHO05D005751 3.2e-111 405.6 291 66.3
MD04G1198500 Malus domestica HOM05D004840 ORTHO05D005751 1.6e-110 403.3 289 67.5
Atru.chr2.82 Acer truncatum HOM05D004840 ORTHO05D005751 2.1e-110 402.9 289 68.9
Sabra05G0029600 Salix brachista HOM05D004840 ORTHO05D005751 3.6e-110 402.1 276 69.6
PSO210G5227 Papaver somniferum HOM05D004840 ORTHO05D005751 1.4e-109 400.2 298 67.4
FvH4_6g06800 Fragaria vesca HOM05D004840 ORTHO05D005751 4.0e-109 398.7 289 67.8
Hma1.2p1_1021F.1_g248650 Hydrangea macrophylla HOM05D004840 ORTHO05D005751 4.0e-109 398.7 292 69.5
CiPaw.07G022700 Carya illinoinensis HOM05D004840 ORTHO05D005751 6.8e-109 397.9 294 66.7
Manes.08G116500 Manihot esculenta HOM05D004840 ORTHO05D005751 6.8e-109 397.9 291 67.7
FAN09G4274 Fragaria x ananassa HOM05D004840 ORTHO05D005751 5.7e-108 394.8 289 66.8
Cc02_g34310 Coffea canephora HOM05D004840 ORTHO05D005751 7.5e-108 394.4 284 68.3
RcHm_v2.0_Chr3g0456161 Rosa chinensis HOM05D004840 ORTHO05D005751 9.8e-108 394.0 289 67.1
Peaxi162Scf00037g01328 Petunia axillaris HOM05D004840 ORTHO05D005751 2.2e-107 392.9 278 67.6
Manes.09G171500 Manihot esculenta HOM05D004840 ORTHO05D005751 1.4e-106 390.2 286 67.5
Prupe.6G319500 Prunus persica HOM05D004840 ORTHO05D005751 1.8e-106 389.8 284 68.0
Cpa.g.sc48.101 Carica papaya HOM05D004840 ORTHO05D005751 3.1e-106 389.0 274 68.6
Potri.013G014800 Populus trichocarpa HOM05D004840 ORTHO05D005751 2.7e-105 386.0 295 64.7
TWI36G0513 Tripterygium wilfordii HOM05D004840 ORTHO05D005751 4.5e-105 385.2 291 67.0
TWI56G0640 Tripterygium wilfordii HOM05D004840 ORTHO05D005751 4.5e-105 385.2 288 66.0
CANSAT54G0531 Cannabis sativa HOM05D004840 ORTHO05D005751 7.7e-105 384.4 285 66.0
Sc09g0002890 Simmondsia chinensis HOM05D004840 ORTHO05D005751 1.3e-104 383.6 282 66.0
TPR.G17703 Trifolium pratense HOM05D004840 ORTHO05D005751 1.7e-104 383.3 290 64.5
MSTRG.20411 Avicennia marina HOM05D004840 ORTHO05D005751 3.8e-104 382.1 282 66.3
FAN09G2143 Fragaria x ananassa HOM05D004840 ORTHO05D005751 8.6e-104 380.9 280 66.8
Lj5g0001629 Lotus japonicus HOM05D004840 ORTHO05D005751 1.5e-103 380.2 277 65.3
Oeu012128.1 Olea europaea HOM05D004840 ORTHO05D005751 1.5e-103 380.2 276 67.4
Solyc01g099850.3 Solanum lycopersicum HOM05D004840 ORTHO05D005751 2.5e-103 379.4 286 65.0
PGSC0003DMG400024721 Solanum tuberosum HOM05D004840 ORTHO05D005751 2.5e-103 379.4 286 65.4
Ca_10143_v3 Cicer arietinum L. HOM05D004840 ORTHO05D005751 3.3e-103 379.0 290 64.1
Nitab4.5_0000646g0310 Nicotiana tabacum HOM05D004840 ORTHO05D005751 4.3e-103 378.6 278 66.5
Medtr1g083450 Medicago truncatula HOM05D004840 ORTHO05D005751 5.6e-103 378.3 282 64.2
Haze_04127 Corylus avellana HOM05D004840 ORTHO05D005751 2.1e-102 376.3 246 72.4
FAN02G2387 Fragaria x ananassa HOM05D004840 ORTHO05D005751 2.8e-102 375.9 280 66.4
SGA_v2.0_scaffold172G38964 Striga asiatica HOM05D004840 ORTHO05D005751 2.8e-102 375.9 287 66.2
MELO3C004220.2 Cucumis melo HOM05D004840 ORTHO05D005751 1.0e-101 374.0 283 67.5
CAN.G1459.23 Capsicum annuum HOM05D004840 ORTHO05D005751 1.8e-101 373.2 281 65.1
arahy.Tifrunner.gnm1.ann1.GZI5BF Arachis hypogaea HOM05D004840 ORTHO05D005751 4.0e-101 372.1 286 62.9
CsaV3_2G006680 Cucumis sativus L. HOM05D004840 ORTHO05D005751 8.9e-101 370.9 287 66.6
COL.COLO4_10535 Corchorus olitorius HOM05D004840 ORTHO05D005751 1.5e-100 370.2 251 69.7
Sopen01g043360 Solanum pennellii HOM05D004840 ORTHO05D005751 1.5e-100 370.2 286 63.6
Psat6g150960 Pisum sativum HOM05D004840 ORTHO05D005751 2.0e-100 369.8 282 62.1
ECA236G2863 Erigeron canadensis HOM05D004840 ORTHO05D005751 3.4e-100 369.0 281 63.7
Nitab4.5_0002805g0130 Nicotiana tabacum HOM05D000001 ORTHO05D005751 1.7e-99 366.7 272 64.7
Phvul.007G197800 Phaseolus vulgaris HOM05D004840 ORTHO05D005751 1.7e-99 366.7 284 61.3
Ah.06g189880 Amaranthus hybridus HOM05D004840 ORTHO05D005751 2.9e-99 365.9 286 63.6
HanXRQChr11g0339841 Helianthus annuus HOM05D004840 ORTHO05D005751 4.9e-99 365.2 284 63.0
Nitab4.5_0003113g0130 Nicotiana tabacum HOM05D004840 ORTHO05D005751 1.4e-98 363.6 300 60.3
ClCG02G015400 Citrullus lanatus HOM05D004840 ORTHO05D005751 4.1e-98 362.1 274 66.8
Sed0004465 Sechium edule HOM05D004840 ORTHO05D005751 4.1e-98 362.1 287 64.5
Sabra13G0012700 Salix brachista HOM05D004840 ORTHO05D005751 5.4e-98 361.7 284 62.7
CDE02G2578 Ceratophyllum demersum HOM05D004840 ORTHO05D005751 1.2e-97 360.5 288 64.9
Hund21718 Selenicereus undatus HOM05D004840 ORTHO05D005751 1.2e-97 360.5 285 63.5
Lalb_Chr02g0148061 Lupinus albus HOM05D004840 ORTHO05D005751 5.9e-97 358.2 282 61.0
Lsat_1_v5_gn_7_74220 Lactuca sativa HOM05D004840 ORTHO05D005751 7.8e-97 357.8 286 61.2
VMungo0720G2003 Vigna mungo HOM05D004840 ORTHO05D005751 7.8e-97 357.8 285 61.4
SalBow7G2231 Salvia bowleyana HOM05D004840 ORTHO05D005751 1.3e-96 357.1 290 62.8
Glyma.10G150900 Glycine max HOM05D004840 ORTHO05D005751 8.6e-96 354.4 258 64.3
arahy.Tifrunner.gnm1.ann1.X9MLMM Arachis hypogaea HOM05D004840 ORTHO05D005751 1.5e-95 353.6 312 57.4
EL10Ac4g09901 Beta vulgaris HOM05D004840 ORTHO05D005751 2.8e-94 349.4 288 60.4
Lj5A372G14 Lonicera japonica HOM05D004840 ORTHO05D005751 3.6e-94 349.0 230 73.9
DCAR_003366 Daucus carota HOM05D004840 ORTHO05D005751 1.2e-92 344.0 289 58.5
Oeu010923.1 Olea europaea HOM05D004840 ORTHO05D005751 1.2e-92 344.0 261 63.6
Gohir.D08G225400 Gossypium hirsutum HOM05D004840 ORTHO05D005751 2.6e-92 342.8 251 67.7
ATR0796G269 Amborella trichopoda HOM05D004840 ORTHO05D005751 5.8e-92 341.7 284 59.2
HPP92_010680 Vanilla planifolia HOM05D004840 ORTHO05D005751 5.8e-92 341.7 279 60.6
Zm00001eb183580 Zea mays HOM05D004840 ORTHO05D005751 9.8e-92 340.9 279 58.4
Os02g0592500 Oryza sativa ssp. japonica HOM05D004840 ORTHO05D005751 1.3e-91 340.5 278 59.4
Eucgr.H04546 Eucalyptus grandis HOM05D004840 ORTHO05D005751 2.9e-91 339.3 269 61.7
PGR031G0640 Punica granatum HOM05D004840 ORTHO05D005751 4.9e-91 338.6 285 60.0
Migut.B01018 Erythranthe guttata HOM05D004840 ORTHO05D005751 3.7e-83 312.4 273 58.2
SHI18096 Sapria himalayana HOM05D004840 ORTHO05D005751 3.5e-81 305.8 240 59.2
AUR62000745 Chenopodium quinoa HOM05D004840 ORTHO05D005751 7.3e-79 298.1 233 63.1
SEGI_16961 Sequoiadendron giganteum HOM05D004840 ORTHO05D005751 1.7e-75 287.0 295 47.8
AUR62005219 Chenopodium quinoa HOM05D004840 ORTHO05D005751 3.2e-74 282.7 257 56.4
AT5G27830 Arabidopsis thaliana HOM05D004840 ORTHO05D005751 1.6e-73 280.4 287 49.1
Sp2g20950 Schrenkiella parvula HOM05D004840 ORTHO05D005751 2.1e-73 280.0 287 49.5
Carub.0006s2475 Capsella rubella HOM05D004840 ORTHO05D005751 2.7e-73 279.6 287 49.1
AL6G39110 Arabidopsis lyrata HOM05D004840 ORTHO05D005751 1.0e-72 277.7 290 49.3
BcaC04g23645 Brassica carinata HOM05D004840 ORTHO05D005751 1.1e-71 274.2 287 49.5
A09p05450 Brassica napus HOM05D004840 ORTHO05D005751 1.1e-71 274.2 279 50.5
C09p05910 Brassica napus HOM05D004840 ORTHO05D005751 1.1e-71 274.2 287 49.5
BcaB04g19688 Brassica carinata HOM05D004840 ORTHO05D005751 1.9e-71 273.5 279 49.5
C07p41150 Brassica napus HOM05D004840 ORTHO05D005751 3.3e-71 272.7 288 47.9
A06p37310 Brassica napus HOM05D004840 ORTHO05D005751 9.6e-71 271.2 280 48.6
BraA09t36183Z Brassica rapa HOM05D004840 ORTHO05D005751 1.2e-70 270.8 297 48.5
CARHR186320 Cardamine hirsuta HOM05D004840 ORTHO05D005751 2.8e-70 269.6 288 47.6
BolC9t53517H Brassica oleracea HOM05D004840 ORTHO05D005751 3.6e-70 269.2 294 49.0
BolC7t44643H Brassica oleracea HOM05D004840 ORTHO05D005751 1.4e-69 267.3 291 47.4
BcaNung04748 Brassica carinata HOM05D004840 ORTHO05D005751 2.0e-68 263.5 273 49.8
Thhalv10004669m.g Eutrema salsugineum HOM05D004840 ORTHO05D005751 2.0e-68 263.5 290 46.9
Glyma.20G237300 Glycine max HOM05D004840 ORTHO05D005751 3.4e-68 262.7 282 48.9
unitig_37.g12625 Utricularia gibba HOM05D004840 ORTHO05D005751 4.9e-67 258.8 256 49.2
Aa31LG11G9580 Aethionema arabicum HOM05D004840 ORTHO05D005751 8.4e-67 258.1 288 46.5
Gorai.004G239400 Gossypium raimondii HOM05D004840 ORTHO05D005751 7.1e-66 255.0 273 53.5
THA.LOC104821728 Tarenaya hassleriana HOM05D004840 ORTHO05D005751 1.5e-63 247.3 274 48.2
Mapoly0073s0083 Marchantia polymorpha HOM05D004840 ORTHO05D005751 1.6e-57 227.3 259 41.7
CARHR079990 Cardamine hirsuta HOM05D004840 ORTHO05D005751 1.3e-48 197.6 240 44.6
CBR_g12354 Chara braunii HOM05D004840 ORTHO05D005751 9.6e-47 191.4 276 39.9
Sp3g04440 Schrenkiella parvula HOM05D004840 ORTHO05D005751 4.8e-46 189.1 241 43.6
SMO351G0431 Selaginella moellendorffii HOM05D004840 ORTHO05D005751 6.2e-46 188.7 269 39.0
CARHR080000 Cardamine hirsuta HOM05D004840 ORTHO05D005751 4.0e-45 186.0 199 48.2
AL3G16200 Arabidopsis lyrata HOM05D004840 ORTHO05D005751 3.0e-40 169.9 229 42.8
BcaB04g21439 Brassica carinata HOM05D004840 ORTHO05D005751 3.7e-38 162.9 205 48.3
BolC1t05686H Brassica oleracea HOM05D004840 ORTHO05D005751 6.9e-37 158.7 196 46.9
BcaC09g47836 Brassica carinata HOM05D004840 ORTHO05D005751 1.5e-36 157.5 281 38.8
BcaB04g21445 Brassica carinata HOM05D004840 ORTHO05D005751 5.9e-36 155.6 181 47.5
BcaC09g47832 Brassica carinata HOM05D004840 ORTHO05D005751 5.0e-35 152.5 196 46.4
BraA01t04479Z Brassica rapa HOM05D004840 ORTHO05D005751 5.0e-35 152.5 184 45.1
BcaC05g30108 Brassica carinata HOM05D004840 ORTHO05D005751 1.9e-34 150.6 198 43.4
BcaC09g47835 Brassica carinata HOM05D004840 ORTHO05D005751 5.5e-34 149.1 243 38.7
C05p61640 Brassica napus HOM05D004840 ORTHO05D005751 2.1e-33 147.1 200 42.5
BraA01t03309Z Brassica rapa HOM05D004840 ORTHO05D005751 7.9e-33 145.2 247 38.9
BolC5t34822H Brassica oleracea HOM05D004840 ORTHO05D005751 1.0e-32 144.8 198 42.9
BolC1t05687H Brassica oleracea HOM05D004840 ORTHO05D005751 1.1e-29 134.8 282 34.8
A01p31830 Brassica napus HOM05D004840 ORTHO05D005751 2.4e-29 133.7 142 49.3
BraA01t04480Z Brassica rapa HOM05D004840 ORTHO05D005751 3.1e-29 133.3 199 39.7
CARHR182590 Cardamine hirsuta HOM05D004840 ORTHO05D005751 3.8e-27 126.3 150 42.0
Actinidia35548 Actinidia chinensis HOM05D004840 ORTHO05D005751 8.5e-27 125.2 102 63.7
BraA01t03307Z Brassica rapa HOM05D004840 ORTHO05D005751 2.5e-26 123.6 142 48.6
BcaC09g47833 Brassica carinata HOM05D004840 ORTHO05D005751 3.3e-23 113.2 196 39.3
BcaC09g47834 Brassica carinata HOM05D004840 ORTHO05D005751 3.3e-23 113.2 196 39.3
MCO15G505 Micromonas commoda HOM05D004840 ORTHO05D005751 2.0e-20 104.0 172 38.4
PRCOL_00005226 Prasinoderma coloniale HOM05D004840 ORTHO05D005751 5.9e-20 102.4 147 38.1
BcaC03g13846 Brassica carinata HOM05D004840 ORTHO05D005751 1.2e-17 94.7 62 62.9
BolC2t07120H Brassica oleracea HOM05D004840 ORTHO05D005751 1.2e-17 94.7 62 62.9
Duzib128G0694 Durio zibethinus HOM05D004840 ORTHO05D005751 5.2e-16 89.4 72 58.3
RcHm_v2.0_Chr2g0123281 Rosa chinensis HOM05D004840 ORTHO05D005751 5.7e-15 85.9 95 50.5
BraA05t22958Z Brassica rapa HOM05D004840 ORTHO05D005751 7.4e-15 85.5 148 39.2
Nitab4.5_0007800g0020 Nicotiana tabacum HOM05D004840 ORTHO05D005751 4.8e-14 82.8 100 43.0
Cre06.g258000 Chlamydomonas reinhardtii HOM05D004840 ORTHO05D005751 5.2e-08 62.8 168 27.4


User provided reference genes

Program Settings