Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR365G1009 Trochodendron aralioides HOM05D007325 ORTHO05D009251 4.0e-90 334.7 169 100.0
MBI18_g28938_MAGBIO Magnolia biondii HOM05D007325 ORTHO05D009251 1.6e-14 83.6 93 50.5
PGSC0003DMG400018232 Solanum tuberosum HOM05D007325 ORTHO05D009251 8.1e-14 81.3 73 61.6
Ciclev10030031m.g Citrus clementina HOM05D007325 ORTHO05D009251 2.3e-13 79.7 71 57.7
Phvul.001G220700 Phaseolus vulgaris HOM05D007325 ORTHO05D009251 6.8e-13 78.2 86 50.0
VMungo1383G0662 Vigna mungo HOM05D007325 ORTHO05D009251 8.9e-13 77.8 86 50.0
Thecc.05G331600 Theobroma cacao HOM05D007325 ORTHO05D009251 1.2e-12 77.4 106 47.2
MD12G1197000 Malus domestica HOM05D007325 ORTHO05D009251 2.0e-12 76.6 103 48.5
Prupe.6G302100 Prunus persica HOM05D007325 ORTHO05D009251 2.0e-12 76.6 106 46.2
Cc02_g36910 Coffea canephora HOM05D007325 ORTHO05D009251 2.6e-12 76.3 71 57.7
Lalb_Chr04g0260261 Lupinus albus HOM05D007325 ORTHO05D009251 3.4e-12 75.9 105 43.8
Manes.09G182800 Manihot esculenta HOM05D007325 ORTHO05D009251 9.9e-12 74.3 61 57.4
Dinv24533 Davidia involucrata HOM05D003267 ORTHO05D003955 1.3e-11 73.9 76 53.9
Gorai.013G131900 Gossypium raimondii HOM05D007325 ORTHO05D009251 1.3e-11 73.9 83 49.4
Atru.chr12.1499 Acer truncatum HOM05D007325 ORTHO05D009251 1.7e-11 73.6 70 57.1
arahy.Tifrunner.gnm1.ann1.Y42B53 Arachis hypogaea HOM05D007325 ORTHO05D009251 8.3e-11 71.2 72 54.2
Glyma.03G226900 Glycine max HOM05D007325 ORTHO05D009251 8.3e-11 71.2 77 49.4
Potri.005G000700 Populus trichocarpa HOM05D007325 ORTHO05D009251 8.3e-11 71.2 80 47.5
Sopen01g044880 Solanum pennellii HOM05D007325 ORTHO05D009251 1.1e-10 70.9 73 57.5
ATR0693G152 Amborella trichopoda HOM05D007325 ORTHO05D009251 1.4e-10 70.5 89 46.1
Gohir.A13G114400 Gossypium hirsutum HOM05D007325 ORTHO05D009251 3.2e-10 69.3 83 48.2
BcaC01g04310 Brassica carinata HOM05D007325 ORTHO05D009251 5.4e-10 68.6 72 55.6
C03p41860 Brassica napus HOM05D007325 ORTHO05D009251 5.4e-10 68.6 72 55.6
BolC3t16469H Brassica oleracea HOM05D007325 ORTHO05D009251 5.4e-10 68.6 72 55.6
Dinv30961 Davidia involucrata HOM05D007325 ORTHO05D009251 5.4e-10 68.6 99 47.5
Manes.08G105900 Manihot esculenta HOM05D007325 ORTHO05D009251 9.2e-10 67.8 82 48.8
CANSAT54G2629 Cannabis sativa HOM05D007325 ORTHO05D009251 1.2e-09 67.4 72 52.8
TAR365G0322 Trochodendron aralioides HOM05D007325 ORTHO05D009251 1.2e-09 67.4 75 48.0
Gohir.D13G117300 Gossypium hirsutum HOM05D007325 ORTHO05D009251 1.6e-09 67.0 83 47.0
Lalb_Chr02g0147341 Lupinus albus HOM05D007325 ORTHO05D009251 1.6e-09 67.0 73 53.4
Cfa004401 Carpinus fangiana HOM05D008494 ORTHO05D010021 2.1e-09 66.6 82 47.6
MD04G1183600 Malus domestica HOM05D007325 ORTHO05D009251 2.1e-09 66.6 74 52.7
Lj9P239T47 Lonicera japonica HOM05D007325 ORTHO05D009251 2.7e-09 66.2 60 60.0
PGR119G2017 Punica granatum HOM05D007325 ORTHO05D009251 2.7e-09 66.2 107 43.0
TPR.G3077 Trifolium pratense HOM05D007325 ORTHO05D009251 2.7e-09 66.2 74 51.4
Carub.0006s2420 Capsella rubella HOM05D007325 ORTHO05D009251 3.5e-09 65.9 94 45.7
Lalb_Chr21g0309941 Lupinus albus HOM05D007325 ORTHO05D009251 3.5e-09 65.9 73 53.4
Thhalv10022316m.g Eutrema salsugineum HOM05D007325 ORTHO05D009251 4.6e-09 65.5 102 45.1
Lsat_1_v5_gn_9_83741 Lactuca sativa HOM05D007325 ORTHO05D009251 4.6e-09 65.5 84 41.7
Psat6g156800 Pisum sativum HOM05D007325 ORTHO05D009251 6.0e-09 65.1 68 57.4
SGA_v2.0_scaffold131G34452 Striga asiatica HOM05D007325 ORTHO05D009251 7.8e-09 64.7 81 49.4
Lj5g0004840 Lotus japonicus HOM05D007325 ORTHO05D009251 1.0e-08 64.3 77 50.6
Glyma.19G223800 Glycine max HOM05D007325 ORTHO05D009251 1.7e-08 63.5 92 40.2
Lj5P313T22 Lonicera japonica HOM05D007325 ORTHO05D009251 1.7e-08 63.5 74 48.6
Oeu061920.1 Olea europaea HOM05D007325 ORTHO05D009251 1.7e-08 63.5 91 45.1
Sp3g04850 Schrenkiella parvula HOM05D007325 ORTHO05D009251 2.3e-08 63.2 71 50.7
THA.LOC104822290 Tarenaya hassleriana HOM05D007325 ORTHO05D009251 3.9e-08 62.4 71 52.1
Aa31LG5G16370 Aethionema arabicum HOM05D007325 ORTHO05D009251 5.1e-08 62.0 86 45.3
CSS0011097 Camellia sinensis var. sinensis HOM05D007325 ORTHO05D009251 8.6e-08 61.2 74 47.3
CARHR080420 Cardamine hirsuta HOM05D007325 ORTHO05D009251 1.1e-07 60.8 82 42.7
Carub.0003s0533 Capsella rubella HOM05D007325 ORTHO05D009251 1.5e-07 60.5 82 43.9
Lj1g0016832 Lotus japonicus HOM05D007325 ORTHO05D009251 1.5e-07 60.5 76 48.7
BraA03t12615Z Brassica rapa HOM05D007325 ORTHO05D009251 1.9e-07 60.1 72 50.0
Migut.B00680 Erythranthe guttata HOM05D007325 ORTHO05D009251 1.9e-07 60.1 53 58.5
HanXRQChr04g0108581 Helianthus annuus HOM05D007325 ORTHO05D009251 2.5e-07 59.7 75 48.0
Lalb_Chr06g0167201 Lupinus albus HOM05D007325 ORTHO05D009251 2.5e-07 59.7 70 51.4
TWI14G0425 Tripterygium wilfordii HOM05D007325 ORTHO05D009251 2.5e-07 59.7 74 50.0
BcaC05g30077 Brassica carinata HOM05D007325 ORTHO05D009251 3.3e-07 59.3 71 47.9
C05p61330 Brassica napus HOM05D007325 ORTHO05D009251 3.3e-07 59.3 71 47.9
BolC5t34792H Brassica oleracea HOM05D007325 ORTHO05D009251 3.3e-07 59.3 71 47.9
A05p42120 Brassica napus HOM05D007325 ORTHO05D009251 5.6e-07 58.5 71 46.5
BraA05t22930Z Brassica rapa HOM05D007325 ORTHO05D009251 5.6e-07 58.5 71 46.5
Glyma.20G089800 Glycine max HOM05D007325 ORTHO05D009251 5.6e-07 58.5 77 45.5
BcaB04g19232 Brassica carinata HOM05D007325 ORTHO05D009251 7.3e-07 58.2 85 43.5
Glyma.10G141100 Glycine max HOM05D007325 ORTHO05D009251 1.2e-06 57.4 48 56.2
RcHm_v2.0_Chr3g0459051 Rosa chinensis HOM05D007325 ORTHO05D009251 1.2e-06 57.4 107 36.4
SalBow6G6911 Salvia bowleyana HOM05D007325 ORTHO05D009251 1.6e-06 57.0 88 43.2
VMungo0720G0176 Vigna mungo HOM05D003267 ORTHO05D003955 2.1e-06 56.6 63 47.6
Eucgr.B01357 Eucalyptus grandis HOM05D007325 ORTHO05D009251 2.8e-06 56.2 43 67.4
Phvul.007G207000 Phaseolus vulgaris HOM05D007325 ORTHO05D009251 2.8e-06 56.2 63 47.6
Aa31LG11G10030 Aethionema arabicum HOM05D007325 ORTHO05D009251 3.6e-06 55.8 73 45.2
A06p36820 Brassica napus HOM05D007325 ORTHO05D009251 3.6e-06 55.8 81 42.0
BraA06t26608Z Brassica rapa HOM05D007325 ORTHO05D009251 4.7e-06 55.5 81 42.0
Eucgr.H01350 Eucalyptus grandis HOM05D007325 ORTHO05D009251 4.7e-06 55.5 72 52.8
FAN09G1210 Fragaria x ananassa HOM05D007325 ORTHO05D009251 4.7e-06 55.5 70 45.7
AL3G16720 Arabidopsis lyrata HOM05D007325 ORTHO05D009251 6.2e-06 55.1 71 46.5
Thhalv10005170m.g Eutrema salsugineum HOM05D007325 ORTHO05D009251 6.2e-06 55.1 78 43.6
MBI18_g03881_MAGBIO Magnolia biondii HOM05D007325 ORTHO05D009251 6.2e-06 55.1 45 60.0
A03p34390 Brassica napus HOM05D007325 ORTHO05D009251 8.1e-06 54.7 72 48.6


User provided reference genes

Program Settings