Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR365G1004 Trochodendron aralioides HOM05D003956 ORTHO05D004850 0.0e+00 1924.8 977 100.0
Dinv44455 Davidia involucrata HOM05D003956 ORTHO05D004850 0.0e+00 1682.9 979 86.7
GSVIVG01017850001 Vitis vinifera HOM05D003956 ORTHO05D004850 0.0e+00 1679.5 978 86.5
Rhsim04G0213100 Rhododendron simsii HOM05D003956 ORTHO05D004850 0.0e+00 1667.5 983 86.3
Prupe.1G146600 Prunus persica HOM05D003956 ORTHO05D004850 0.0e+00 1661.7 978 85.7
Aqoxy2G03183 Aquilegia oxysepala HOM05D003956 ORTHO05D004850 0.0e+00 1652.5 981 85.7
Actinidia23451 Actinidia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1650.6 981 85.2
Actinidia40209 Actinidia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1649.8 981 84.9
QL06p006231 Quercus lobata HOM05D003956 ORTHO05D004850 0.0e+00 1649.4 989 84.4
PGR004G0287 Punica granatum HOM05D003956 ORTHO05D004850 0.0e+00 1646.7 976 84.8
Atru.chr4.2704 Acer truncatum HOM05D003956 ORTHO05D004850 0.0e+00 1644.4 978 85.4
CiPaw.01G156600 Carya illinoinensis HOM05D003956 ORTHO05D004850 0.0e+00 1644.4 976 84.8
Duzib212G0153 Durio zibethinus HOM05D003956 ORTHO05D004850 0.0e+00 1642.9 977 84.7
Nn3g21184 Nelumbo nucifera HOM05D003956 ORTHO05D004850 0.0e+00 1642.5 985 84.9
Manes.03G188300 Manihot esculenta HOM05D003956 ORTHO05D004850 0.0e+00 1641.7 980 85.8
Gorai.011G181800 Gossypium raimondii HOM05D003956 ORTHO05D004850 0.0e+00 1638.2 982 84.2
Cfa015539 Carpinus fangiana HOM05D003956 ORTHO05D004850 0.0e+00 1635.2 980 85.1
TWI09G0935 Tripterygium wilfordii HOM05D003956 ORTHO05D004850 0.0e+00 1634.4 977 84.3
Gohir.D10G162900 Gossypium hirsutum HOM05D003956 ORTHO05D004850 0.0e+00 1633.2 982 84.1
Eucgr.H03642 Eucalyptus grandis HOM05D003956 ORTHO05D004850 0.0e+00 1623.2 972 83.6
CANSAT78G1736 Cannabis sativa HOM05D003956 ORTHO05D004850 0.0e+00 1621.7 983 83.6
Haze_01011 Corylus avellana HOM05D003956 ORTHO05D004850 0.0e+00 1621.3 974 85.2
Potri.010G027800 Populus trichocarpa HOM05D003956 ORTHO05D004850 0.0e+00 1618.2 983 84.0
Peaxi162Scf00095g00414 Petunia axillaris HOM05D003956 ORTHO05D004850 0.0e+00 1617.4 981 83.0
CsaV3_3G013930 Cucumis sativus L. HOM05D003956 ORTHO05D004850 0.0e+00 1615.9 978 84.3
MD13G1177500 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1612.8 1000 82.0
MD16G1179500 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1610.1 971 83.8
Nitab4.5_0000059g0230 Nicotiana tabacum HOM05D003956 ORTHO05D004850 0.0e+00 1607.8 990 82.7
Sed0002405 Sechium edule HOM05D003956 ORTHO05D004850 0.0e+00 1604.0 977 83.7
Nitab4.5_0010477g0010 Nicotiana tabacum HOM05D003956 ORTHO05D004850 0.0e+00 1599.7 1006 81.0
Ciclev10006837m.g Citrus clementina HOM05D003956 ORTHO05D004850 0.0e+00 1599.3 1004 81.8
Cc03_g02730 Coffea canephora HOM05D003956 ORTHO05D004850 0.0e+00 1597.4 981 82.2
CSS0033563 Camellia sinensis var. sinensis HOM05D003956 ORTHO05D004850 0.0e+00 1594.3 875 90.5
CAN.G889.10 Capsicum annuum HOM05D003956 ORTHO05D004850 0.0e+00 1593.6 980 82.3
Glyma.07G253700 Glycine max HOM05D003956 ORTHO05D004850 0.0e+00 1585.1 980 82.3
RcHm_v2.0_Chr4g0420131 Rosa chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1583.9 979 81.7
Sabra10G0012900 Salix brachista HOM05D003956 ORTHO05D004850 0.0e+00 1582.8 982 82.4
Lj3C806G12 Lonicera japonica HOM05D003956 ORTHO05D004850 0.0e+00 1581.6 979 81.9
Sopen01g032260 Solanum pennellii HOM05D003956 ORTHO05D004850 0.0e+00 1581.2 980 81.8
FvH4_4g16670 Fragaria vesca HOM05D003956 ORTHO05D004850 0.0e+00 1580.8 979 81.7
Migut.G00282 Erythranthe guttata HOM05D003956 ORTHO05D004850 0.0e+00 1577.4 882 88.0
Solyc01g080460.3 Solanum lycopersicum HOM05D003956 ORTHO05D004850 0.0e+00 1576.2 980 81.4
FAN12G0499 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1572.4 989 80.9
FAN12G2270 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1572.4 989 80.9
Hund20662 Selenicereus undatus HOM05D003956 ORTHO05D004850 0.0e+00 1572.4 978 81.4
Glyma.17G020600 Glycine max HOM05D003956 ORTHO05D004850 0.0e+00 1572.0 980 81.9
FAN22G1243 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1569.3 979 81.3
Cpa.g.sc16.74 Carica papaya HOM05D003956 ORTHO05D004850 0.0e+00 1567.7 891 87.0
Ca_21564_v3 Cicer arietinum L. HOM05D003956 ORTHO05D004850 0.0e+00 1567.0 975 81.4
FAN17G1489 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1567.0 989 80.7
VMungo1215G0684 Vigna mungo HOM05D003956 ORTHO05D004850 0.0e+00 1566.2 923 85.4
Duzib151G0049 Durio zibethinus HOM05D003956 ORTHO05D004850 0.0e+00 1563.1 1006 79.7
Thecc.04G272600 Theobroma cacao HOM05D003956 ORTHO05D004850 0.0e+00 1560.0 939 83.9
Nn4g26122 Nelumbo nucifera HOM05D003956 ORTHO05D004850 0.0e+00 1559.3 874 88.4
THA.LOC104820228 Tarenaya hassleriana HOM05D003956 ORTHO05D004850 0.0e+00 1556.6 948 81.9
FAN07G1911 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1556.2 989 80.3
MD13G1177400 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1556.2 892 86.7
Lj4g0014830 Lotus japonicus HOM05D003956 ORTHO05D004850 0.0e+00 1554.7 990 79.7
Phvul.003G098200 Phaseolus vulgaris HOM05D003956 ORTHO05D004850 0.0e+00 1552.7 899 86.4
TPR.G28132 Trifolium pratense HOM05D003956 ORTHO05D004850 0.0e+00 1552.7 977 80.9
Aa31LG9G1910 Aethionema arabicum HOM05D003956 ORTHO05D004850 0.0e+00 1552.3 971 80.5
ECA240G3955 Erigeron canadensis HOM05D003956 ORTHO05D004850 0.0e+00 1552.3 935 82.6
PSO302G0065 Papaver somniferum HOM05D003956 ORTHO05D004850 0.0e+00 1547.7 979 79.8
PSO170G3340 Papaver somniferum HOM05D003956 ORTHO05D004850 0.0e+00 1545.0 979 79.5
CDE08G0632 Ceratophyllum demersum HOM05D003956 ORTHO05D004850 0.0e+00 1541.6 876 86.4
ATR0626G228 Amborella trichopoda HOM05D003956 ORTHO05D004850 0.0e+00 1540.8 967 79.6
MELO3C006585.2 Cucumis melo HOM05D003956 ORTHO05D004850 0.0e+00 1536.2 844 90.8
Thhalv10024330m.g Eutrema salsugineum HOM05D003956 ORTHO05D004850 0.0e+00 1534.2 896 84.6
Sp7g13780 Schrenkiella parvula HOM05D003956 ORTHO05D004850 0.0e+00 1531.5 895 83.9
SalBow2G1708 Salvia bowleyana HOM05D003956 ORTHO05D004850 0.0e+00 1531.2 874 86.3
AL7G39990 Arabidopsis lyrata HOM05D003956 ORTHO05D004850 0.0e+00 1530.8 971 79.9
AT4G15530 Arabidopsis thaliana HOM05D003956 ORTHO05D004850 0.0e+00 1529.2 970 79.8
Sc25g0004550 Simmondsia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1526.9 858 87.9
Lalb_Chr13g0303991 Lupinus albus HOM05D003956 ORTHO05D004850 0.0e+00 1525.8 891 84.8
MD16G1179300 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1525.8 857 88.4
SGA_v2.0_scaffold142G35643 Striga asiatica HOM05D003956 ORTHO05D004850 0.0e+00 1525.4 979 79.5
MSTRG.10031 Avicennia marina HOM05D003956 ORTHO05D004850 0.0e+00 1525.0 874 85.8
BraA03t14011Z Brassica rapa HOM05D003956 ORTHO05D004850 0.0e+00 1521.1 974 78.1
Lsat_1_v5_gn_5_51481 Lactuca sativa HOM05D003956 ORTHO05D004850 0.0e+00 1521.1 873 85.7
Psat0ss7919g0200 Pisum sativum HOM05D003956 ORTHO05D004850 0.0e+00 1520.8 858 87.3
A01p22040 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1519.6 892 83.6
BraA01t02110Z Brassica rapa HOM05D003956 ORTHO05D004850 0.0e+00 1519.6 892 83.6
MSTRG.10030 Avicennia marina HOM05D003956 ORTHO05D004850 0.0e+00 1518.8 880 84.9
BcaNung00266 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1518.8 888 83.9
C01p27430 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1518.4 892 83.3
C07p47210 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1518.4 974 78.1
BcaC06g32940 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1518.1 974 78.3
BolC7t45243H Brassica oleracea HOM05D003956 ORTHO05D004850 0.0e+00 1517.7 974 78.0
CARHR222330 Cardamine hirsuta HOM05D003956 ORTHO05D004850 0.0e+00 1515.0 885 84.4
MD16G1179400 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1513.4 857 88.0
QL06p005921 Quercus lobata HOM05D003956 ORTHO05D004850 0.0e+00 1513.0 873 85.5
Hma1.2p1_0511F.1_g169230 Hydrangea macrophylla HOM05D003956 ORTHO05D004850 0.0e+00 1510.7 880 86.0
CDE02G0811 Ceratophyllum demersum HOM05D003956 ORTHO05D004850 0.0e+00 1510.0 893 84.1
BolC1t02682H Brassica oleracea HOM05D003956 ORTHO05D004850 0.0e+00 1508.0 899 82.6
Thecc.04G272800 Theobroma cacao HOM05D003956 ORTHO05D004850 0.0e+00 1507.7 875 85.1
vmacro08238 Vaccinium macrocarpon HOM05D003956 ORTHO05D004850 0.0e+00 1507.7 1094 73.2
arahy.Tifrunner.gnm1.ann1.EQKV61 Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1504.2 937 82.2
A03p49170 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1503.0 960 78.0
PGSC0003DMG400032107 Solanum tuberosum HOM05D003956 ORTHO05D004850 0.0e+00 1502.6 843 88.3
DCAR_023283 Daucus carota HOM05D003956 ORTHO05D004850 0.0e+00 1501.1 978 78.0
BcaC09g50248 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1499.2 873 84.1
Duzib151G0209 Durio zibethinus HOM05D003956 ORTHO05D004850 0.0e+00 1498.8 873 84.3
arahy.Tifrunner.gnm1.ann1.YQ8C5N Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1498.0 890 84.8
Os05g0405000 Oryza sativa ssp. japonica HOM05D003956 ORTHO05D004850 0.0e+00 1494.2 893 82.6
ClCG05G005590 Citrullus lanatus HOM05D003956 ORTHO05D004850 0.0e+00 1488.4 967 79.7
Zm00001eb349810 Zea mays HOM05D003956 ORTHO05D004850 0.0e+00 1476.5 895 80.9
EL10Ac1g01820 Beta vulgaris HOM05D003956 ORTHO05D004850 0.0e+00 1474.1 977 77.8
Carub.0007s2635 Capsella rubella HOM05D003956 ORTHO05D004850 0.0e+00 1472.6 858 84.1
arahy.Tifrunner.gnm1.ann1.I3NY02 Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1470.3 905 81.3
Hund19586 Selenicereus undatus HOM05D003956 ORTHO05D004850 0.0e+00 1453.7 844 83.4
Ah.11g043140 Amaranthus hybridus HOM05D003956 ORTHO05D004850 0.0e+00 1453.0 965 76.7
PGR031G3666 Punica granatum HOM05D003956 ORTHO05D004850 0.0e+00 1437.9 854 82.6
AagrBONN_evm.TU.Sc2ySwM_228.3276 Anthoceros agrestis HOM05D003956 ORTHO05D004850 0.0e+00 1432.9 881 79.2
Rhsim02G0016700 Rhododendron simsii HOM05D003956 ORTHO05D004850 0.0e+00 1427.9 882 81.5
Mapoly0009s0124 Marchantia polymorpha HOM05D003956 ORTHO05D004850 0.0e+00 1422.5 877 79.5
Oeu032695.1 Olea europaea HOM05D003956 ORTHO05D004850 0.0e+00 1407.5 774 89.5
Pp3c5_22540 Physcomitrium patens HOM05D003956 ORTHO05D004850 0.0e+00 1395.2 881 77.5
SMO351G0542 Selaginella moellendorffii HOM05D003956 ORTHO05D004850 0.0e+00 1394.8 872 77.9
Eucgr.B01186 Eucalyptus grandis HOM05D003956 ORTHO05D004850 0.0e+00 1393.3 823 82.9
Actinidia32373 Actinidia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1390.6 877 79.9
CSS0013368 Camellia sinensis var. sinensis HOM05D003956 ORTHO05D004850 0.0e+00 1377.8 803 85.8
arahy.Tifrunner.gnm1.ann1.DC6B04 Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1376.3 905 77.1
unitig_26.g8936 Utricularia gibba HOM05D003956 ORTHO05D004850 0.0e+00 1373.6 874 79.5
Psat4g028880 Pisum sativum HOM05D003956 ORTHO05D004850 0.0e+00 1368.2 803 82.6
CSS0018237 Camellia sinensis var. sinensis HOM05D003956 ORTHO05D004850 0.0e+00 1346.6 887 79.7
Gohir.A10G105700 Gossypium hirsutum HOM05D003956 ORTHO05D004850 0.0e+00 1339.7 824 81.9
Hma1.2p1_2025F.1_g311530 Hydrangea macrophylla HOM05D003956 ORTHO05D004850 0.0e+00 1320.4 880 78.0
vmacro15287 Vaccinium macrocarpon HOM05D003956 ORTHO05D004850 0.0e+00 1293.9 875 75.4
BcaC09g50243 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1249.2 779 79.5
Zm00001eb287770 Zea mays HOM05D003956 ORTHO05D004850 0.0e+00 1234.2 730 82.3
TPR.G28133 Trifolium pratense HOM05D003956 ORTHO05D004850 0.0e+00 1209.9 874 71.1
MCO12G211 Micromonas commoda HOM05D003956 ORTHO05D004850 0.0e+00 1196.8 857 68.5
Cre17.g734548 Chlamydomonas reinhardtii HOM05D003956 ORTHO05D004850 0.0e+00 1192.6 875 67.5
unitig_749.g14056 Utricularia gibba HOM05D003956 ORTHO05D004850 0.0e+00 1108.6 633 86.1
Migut.G00280 Erythranthe guttata HOM05D003956 ORTHO05D004850 4.0e-307 1058.1 581 88.6
Cre10.g424750 Chlamydomonas reinhardtii HOM05D003956 ORTHO05D004850 1.4e-304 1049.7 883 60.0
Medtr4g118350 Medicago truncatula HOM05D003956 ORTHO05D004850 1.0e-278 963.8 652 75.9
MCO01G687 Micromonas commoda HOM05D003956 ORTHO05D004850 5.7e-261 904.8 909 54.0
AUR62034950 Chenopodium quinoa HOM05D003956 ORTHO05D004850 1.4e-227 793.9 557 73.4
AUR62035455 Chenopodium quinoa HOM05D003956 ORTHO05D004850 7.2e-224 781.6 533 75.2
AUR62035456 Chenopodium quinoa HOM05D003956 ORTHO05D004850 1.2e-218 764.2 505 77.8
AUR62034949 Chenopodium quinoa HOM05D003956 ORTHO05D004850 4.9e-196 689.1 451 77.8
HanXRQChr03g0080571 Helianthus annuus HOM05D003956 ORTHO05D004850 1.1e-192 677.9 396 84.3
CBR_g50184 Chara braunii HOM05D003956 ORTHO05D004850 6.4e-188 662.1 744 49.9
SGA_v2.0_scaffold86G26866 Striga asiatica HOM05D003956 ORTHO05D004850 3.6e-167 593.2 467 67.0
BcaC06g33414 Brassica carinata HOM05D003956 ORTHO05D004850 1.4e-163 581.3 338 84.6
Medtr4g118355 Medicago truncatula HOM05D003956 ORTHO05D004850 1.0e-140 505.4 296 84.1
SGA_v2.0_scaffold86G26865 Striga asiatica HOM05D003956 ORTHO05D004850 5.0e-140 503.1 391 66.5
AUR62034328 Chenopodium quinoa HOM05D003956 ORTHO05D004850 1.8e-113 414.8 423 54.8
arahy.Tifrunner.gnm1.ann1.9WT78J Arachis hypogaea HOM05D003956 ORTHO05D004850 2.5e-107 394.4 318 66.0
HanXRQChr16g0518081 Helianthus annuus HOM05D003956 ORTHO05D004850 1.9e-91 341.7 217 78.3
arahy.Tifrunner.gnm1.ann1.HZTZ4X Arachis hypogaea HOM05D003956 ORTHO05D004850 5.6e-91 340.1 258 68.2
arahy.Tifrunner.gnm1.ann1.7LSJ4G Arachis hypogaea HOM05D003956 ORTHO05D004850 4.6e-69 267.3 227 63.4
arahy.Tifrunner.gnm1.ann1.989M5Y Arachis hypogaea HOM05D003956 ORTHO05D004850 9.9e-64 249.6 216 60.6
unitig_749.g14057 Utricularia gibba HOM05D003956 ORTHO05D004850 3.1e-57 228.0 151 75.5
AagrBONN_evm.TU.Sc2ySwM_362.937 Anthoceros agrestis HOM05D003956 ORTHO05D004850 1.3e-47 196.1 119 78.2
arahy.Tifrunner.gnm1.ann1.S9XVUY Arachis hypogaea HOM05D003956 ORTHO05D004850 1.8e-44 185.7 268 43.7
Pp3c6_6540 Physcomitrium patens HOM05D003956 ORTHO05D004850 5.5e-38 164.1 114 70.2
BcaC09g50244 Brassica carinata HOM05D003956 ORTHO05D004850 2.0e-32 145.6 85 82.4
arahy.Tifrunner.gnm1.ann1.LGH8AH Arachis hypogaea HOM05D003956 ORTHO05D004850 1.3e-31 142.9 83 83.1
GSVIVG01018502001 Vitis vinifera HOM05D003956 ORTHO05D004850 2.2e-31 142.1 81 87.7
Lsat_1_v5_gn_2_81921 Lactuca sativa HOM05D005278 ORTHO05D006500 6.1e-29 134.0 90 70.0
Pp3s196_40 Physcomitrium patens HOM05D003956 ORTHO05D044360 2.0e-24 119.0 450 27.3
QL06p005983 Quercus lobata HOM05D003956 ORTHO05D004850 1.7e-23 115.9 130 53.8
arahy.Tifrunner.gnm1.ann1.G5444S Arachis hypogaea HOM05D003956 ORTHO05D004850 3.8e-23 114.8 95 63.2
TPR.G26738 Trifolium pratense HOM05D003956 ORTHO05D000576 2.0e-19 102.4 56 82.1
TPR.G35464 Trifolium pratense HOM05D003956 ORTHO05D004850 1.3e-15 89.7 60 68.3
MBI15_g32557_MAGBIO Magnolia biondii HOM05D001670 ORTHO05D011598 1.4e-12 79.7 57 73.7
arahy.Tifrunner.gnm1.ann1.57CL3B Arachis hypogaea HOM05D003956 ORTHO05D004850 3.3e-11 75.1 51 70.6
arahy.Tifrunner.gnm1.ann1.V4Y3U4 Arachis hypogaea HOM05D003956 ORTHO05D004850 5.7e-11 74.3 49 73.5
SGA_v2.0_scaffold86G26869 Striga asiatica HOM05D000924 ORTHO05D001209 8.2e-10 70.5 46 73.9
HanXRQChr09g0261911 Helianthus annuus HOM05D000495 ORTHO05D000357 3.1e-09 68.6 43 72.1
Nn8g40271 Nelumbo nucifera HOM05D001541 ORTHO05D001465 3.1e-09 68.6 119 39.5
Pp3c5_22980 Physcomitrium patens HOM05D003956 ORTHO05D004850 9.1e-09 67.0 43 72.1
arahy.Tifrunner.gnm1.ann1.GGZS5I Arachis hypogaea HOM05D003956 ORTHO05D004850 1.3e-07 63.2 43 69.8


User provided reference genes

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