Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR365G1002 Trochodendron aralioides HOM05D005046 ORTHO05D006194 6.4e-32 140.2 74 100.0
GSVIVG01034987001 Vitis vinifera HOM05D005046 ORTHO05D006194 2.2e-24 115.2 62 96.8
TAR636G1364 Trochodendron aralioides HOM05D005046 ORTHO05D006194 8.4e-24 113.2 62 95.2
Dinv44282 Davidia involucrata HOM05D005046 ORTHO05D006194 1.6e-22 109.0 62 91.9
Dinv15163 Davidia involucrata HOM05D005046 ORTHO05D006194 3.5e-22 107.8 62 90.3
Lj6A691T78 Lonicera japonica HOM05D005046 ORTHO05D006194 6.0e-22 107.1 62 90.3
Nn3g21734 Nelumbo nucifera HOM05D005046 ORTHO05D006194 1.0e-21 106.3 62 93.5
Glyma.17G033800 Glycine max HOM05D005046 ORTHO05D006194 2.3e-21 105.1 62 90.3
TWI73G0015 Tripterygium wilfordii HOM05D005046 ORTHO05D006194 3.0e-21 104.8 62 90.3
Medtr2g034010 Medicago truncatula HOM05D005046 ORTHO05D006194 6.6e-21 103.6 62 88.7
Ca_00977_v3 Cicer arietinum L. HOM05D005046 ORTHO05D006194 8.7e-21 103.2 62 88.7
Lalb_Chr18g0058661 Lupinus albus HOM05D005046 ORTHO05D006194 8.7e-21 103.2 62 88.7
Lsat_1_v5_gn_1_41381 Lactuca sativa HOM05D005046 ORTHO05D006194 1.1e-20 102.8 62 88.7
Lalb_Chr20g0120821 Lupinus albus HOM05D005046 ORTHO05D006194 1.1e-20 102.8 62 88.7
ClCG06G004560 Citrullus lanatus HOM05D005046 ORTHO05D006194 1.5e-20 102.4 62 85.5
Lj6g0015111 Lotus japonicus HOM05D005046 ORTHO05D006194 1.5e-20 102.4 62 87.1
MELO3C021266.2 Cucumis melo HOM05D005046 ORTHO05D006194 1.9e-20 102.1 62 83.9
CsaV3_6G028590 Cucumis sativus L. HOM05D005046 ORTHO05D006194 1.9e-20 102.1 62 83.9
TPR.G13743 Trifolium pratense HOM05D005046 ORTHO05D006194 1.9e-20 102.1 62 87.1
HanXRQChr11g0353491 Helianthus annuus HOM05D005046 ORTHO05D006194 2.5e-20 101.7 62 88.7
CSS0005662 Camellia sinensis var. sinensis HOM05D005046 ORTHO05D006194 3.3e-20 101.3 62 87.1
CSS0011224 Camellia sinensis var. sinensis HOM05D005046 ORTHO05D006194 3.3e-20 101.3 62 87.1
CSS0039452 Camellia sinensis var. sinensis HOM05D005046 ORTHO05D006194 3.3e-20 101.3 62 87.1
Glyma.07G239500 Glycine max HOM05D005046 ORTHO05D006194 4.3e-20 100.9 62 87.1
Manes.15G000300 Manihot esculenta HOM05D005046 ORTHO05D006194 5.6e-20 100.5 63 92.1
Phvul.003G114500 Phaseolus vulgaris HOM05D005046 ORTHO05D006194 5.6e-20 100.5 62 83.9
VMungo1215G0235 Vigna mungo HOM05D005046 ORTHO05D006194 5.6e-20 100.5 62 83.9
Psat1g160840 Pisum sativum HOM05D005046 ORTHO05D006194 7.3e-20 100.1 62 85.5
Actinidia14256 Actinidia chinensis HOM05D005046 ORTHO05D006194 1.3e-19 99.4 62 87.1
Aqoxy5G02541 Aquilegia oxysepala HOM05D005046 ORTHO05D006194 1.3e-19 99.4 62 83.9
Glyma.15G139900 Glycine max HOM05D005046 ORTHO05D006194 1.3e-19 99.4 62 87.1
MD16G1153600 Malus domestica HOM05D005046 ORTHO05D006194 1.3e-19 99.4 58 89.7
Cfa015310 Carpinus fangiana HOM05D005046 ORTHO05D006194 1.6e-19 99.0 58 89.7
Actinidia13356 Actinidia chinensis HOM05D005046 ORTHO05D006194 2.1e-19 98.6 62 87.1
Phvul.006G118400 Phaseolus vulgaris HOM05D005046 ORTHO05D006194 2.1e-19 98.6 62 88.7
Sed0022816 Sechium edule HOM05D005046 ORTHO05D006194 2.1e-19 98.6 62 83.9
VMungo0540G1157 Vigna mungo HOM05D005046 ORTHO05D006194 2.1e-19 98.6 62 88.7
QL05p065557 Quercus lobata HOM05D005046 ORTHO05D006194 2.8e-19 98.2 59 89.8
arahy.Tifrunner.gnm1.ann1.4F0N5D Arachis hypogaea HOM05D005046 ORTHO05D006194 3.6e-19 97.8 62 82.3
arahy.Tifrunner.gnm1.ann1.KUZ2VC Arachis hypogaea HOM05D005046 ORTHO05D006194 3.6e-19 97.8 62 82.3
CiPaw.01G138200 Carya illinoinensis HOM05D005046 ORTHO05D006194 4.8e-19 97.4 63 85.7
CDE02G0992 Ceratophyllum demersum HOM05D005046 ORTHO05D006194 4.8e-19 97.4 62 77.4
Prupe.1G116800 Prunus persica HOM05D005046 ORTHO05D006194 1.4e-18 95.9 63 85.7
Sabra10G0112600 Salix brachista HOM05D005046 ORTHO05D006194 1.4e-18 95.9 63 87.3
PSO210G4010 Papaver somniferum HOM05D005046 ORTHO05D006194 1.8e-18 95.5 63 82.5
PSO761G0203 Papaver somniferum HOM05D005046 ORTHO05D006194 1.8e-18 95.5 63 82.5
Potri.010G146100 Populus trichocarpa HOM05D005046 ORTHO05D006194 1.8e-18 95.5 63 85.7
HPP92_016092 Vanilla planifolia HOM05D005046 ORTHO05D006194 1.8e-18 95.5 57 86.0
DCAR_026983 Daucus carota HOM05D005046 ORTHO05D006194 2.4e-18 95.1 62 83.9
SGA_v2.0_scaffold104G30073 Striga asiatica HOM05D005046 ORTHO05D006194 2.4e-18 95.1 62 85.5
Oeu001169.1 Olea europaea HOM05D005046 ORTHO05D006194 3.1e-18 94.7 62 85.5
Cc03_g00760 Coffea canephora HOM05D005046 ORTHO05D006194 4.0e-18 94.4 61 85.2
Eucgr.H04047 Eucalyptus grandis HOM05D005046 ORTHO05D006194 5.3e-18 94.0 63 85.7
Glyma.09G035300 Glycine max HOM05D005046 ORTHO05D006194 6.9e-18 93.6 62 83.9
CANSAT78G2375 Cannabis sativa HOM05D005046 ORTHO05D006194 9.0e-18 93.2 59 83.1
CiPaw.02G074700 Carya illinoinensis HOM05D005046 ORTHO05D006194 9.0e-18 93.2 60 81.7
MD13G1153200 Malus domestica HOM05D005046 ORTHO05D006194 9.0e-18 93.2 62 83.9
Thecc.04G301400 Theobroma cacao HOM05D005046 ORTHO05D006194 1.5e-17 92.4 62 82.3
COL.COLO4_34610 Corchorus olitorius HOM05D005046 ORTHO05D006194 2.0e-17 92.0 62 80.6
Gohir.D01G023544 Gossypium hirsutum HOM05D005046 ORTHO05D006194 2.0e-17 92.0 62 80.6
Gorai.002G030300 Gossypium raimondii HOM05D005046 ORTHO05D006194 2.0e-17 92.0 62 80.6
MBI18_g37558_MAGBIO Magnolia biondii HOM05D005046 ORTHO05D006194 2.0e-17 92.0 84 65.5
Sabra08G0079200 Salix brachista HOM05D005046 ORTHO05D006194 2.6e-17 91.7 60 81.7
Sed0009015 Sechium edule HOM05D005046 ORTHO05D006194 2.6e-17 91.7 62 79.0
ATR0693G376 Amborella trichopoda HOM05D005046 ORTHO05D006194 3.4e-17 91.3 62 82.3
MSTRG.10153 Avicennia marina HOM05D005046 ORTHO05D006194 3.4e-17 91.3 62 82.3
Solyc12g099240.2 Solanum lycopersicum HOM05D005046 ORTHO05D006194 3.4e-17 91.3 62 80.6
Sopen12g033920 Solanum pennellii HOM05D005046 ORTHO05D006194 3.4e-17 91.3 62 80.6
PGSC0003DMG400004620 Solanum tuberosum HOM05D005046 ORTHO05D006194 3.4e-17 91.3 62 80.6
MSTRG.24823 Avicennia marina HOM05D005046 ORTHO05D006194 5.8e-17 90.5 62 79.0
Duzib212G1042 Durio zibethinus HOM05D005046 ORTHO05D006194 5.8e-17 90.5 62 79.0
Migut.G00065 Erythranthe guttata HOM05D005046 ORTHO05D006194 5.8e-17 90.5 62 80.6
Gohir.A01G034600 Gossypium hirsutum HOM05D005046 ORTHO05D006194 5.8e-17 90.5 62 79.0
Ciclev10006264m.g Citrus clementina HOM05D005046 ORTHO05D006194 7.6e-17 90.1 63 82.5
PGR004G2877 Punica granatum HOM05D005046 ORTHO05D006194 7.6e-17 90.1 74 70.3
vmacro15180 Vaccinium macrocarpon HOM05D005046 ORTHO05D006194 7.6e-17 90.1 68 77.9
CAN.G484.64 Capsicum annuum HOM05D005046 ORTHO05D006194 1.3e-16 89.4 62 82.3
Rhsim04G0239300 Rhododendron simsii HOM05D005046 ORTHO05D006194 1.3e-16 89.4 63 81.0
Gorai.005G067500 Gossypium raimondii HOM05D005046 ORTHO05D006194 1.7e-16 89.0 62 79.0
Lj5g0009192 Lotus japonicus HOM05D005046 ORTHO05D006194 1.7e-16 89.0 70 70.0
Actinidia18456 Actinidia chinensis HOM05D005046 ORTHO05D006194 2.2e-16 88.6 62 79.0
Actinidia40381 Actinidia chinensis HOM05D005046 ORTHO05D006194 2.2e-16 88.6 62 79.0
Haze_01302 Corylus avellana HOM05D005046 ORTHO05D006194 2.2e-16 88.6 58 84.5
unitig_749.g13361 Utricularia gibba HOM05D005046 ORTHO05D006194 2.2e-16 88.6 62 75.8
vmacro08042 Vaccinium macrocarpon HOM05D005046 ORTHO05D006194 2.2e-16 88.6 58 81.0
THA.LOC104805014 Tarenaya hassleriana HOM05D005046 ORTHO05D006194 2.9e-16 88.2 63 82.5
Duzib052G0826 Durio zibethinus HOM05D005046 ORTHO05D006194 3.8e-16 87.8 62 77.4
RcHm_v2.0_Chr4g0425361 Rosa chinensis HOM05D005046 ORTHO05D006194 3.8e-16 87.8 58 79.3
Zm00001eb211320 Zea mays HOM05D005046 ORTHO05D006194 3.8e-16 87.8 51 86.3
Gohir.A02G054900 Gossypium hirsutum HOM05D005046 ORTHO05D006194 4.9e-16 87.4 62 77.4
FvH4_4g19820 Fragaria vesca HOM05D005046 ORTHO05D006194 6.4e-16 87.0 58 79.3
FAN07G0875 Fragaria x ananassa HOM05D005046 ORTHO05D006194 6.4e-16 87.0 58 79.3
FAN12G2964 Fragaria x ananassa HOM05D005046 ORTHO05D006194 6.4e-16 87.0 58 79.3
Nitab4.5_0000403g0120 Nicotiana tabacum HOM05D005046 ORTHO05D006194 6.4e-16 87.0 62 80.6
SalBow5G2652 Salvia bowleyana HOM05D005046 ORTHO05D006194 1.1e-15 86.3 62 75.8
Lj1g0019312 Lotus japonicus HOM05D005046 ORTHO05D006194 1.4e-15 85.9 57 78.9
Os03g0832300 Oryza sativa ssp. japonica HOM05D005046 ORTHO05D006194 1.4e-15 85.9 54 81.5
Peaxi162Scf00228g00326 Petunia axillaris HOM05D005046 ORTHO05D006194 1.4e-15 85.9 62 77.4
Rhsim02G0003600 Rhododendron simsii HOM05D005046 ORTHO05D006194 1.4e-15 85.9 59 81.4
SEGI_33495 Sequoiadendron giganteum HOM05D005046 ORTHO05D006194 1.9e-15 85.5 57 82.5
Aa31LG5G17170 Aethionema arabicum HOM05D005046 ORTHO05D006194 3.2e-15 84.7 63 77.8
AagrBONN_evm.TU.Sc2ySwM_368.969 Anthoceros agrestis HOM05D005046 ORTHO05D006194 3.2e-15 84.7 62 79.0
AagrBONN_evm.TU.Sc2ySwM_368.976 Anthoceros agrestis HOM05D005046 ORTHO05D006194 3.2e-15 84.7 62 79.0
BraA01t04428Z Brassica rapa HOM05D005046 ORTHO05D006194 5.4e-15 84.0 63 77.8
BcaC05g30546 Brassica carinata HOM05D005046 ORTHO05D006194 7.1e-15 83.6 66 75.8
A05p41430 Brassica napus HOM05D005046 ORTHO05D006194 7.1e-15 83.6 63 77.8
C05p60640 Brassica napus HOM05D005046 ORTHO05D006194 7.1e-15 83.6 63 77.8
BolC1t05599H Brassica oleracea HOM05D005046 ORTHO05D006194 7.1e-15 83.6 63 77.8
BolC5t34723H Brassica oleracea HOM05D005046 ORTHO05D006194 7.1e-15 83.6 63 77.8
BraA05t22864Z Brassica rapa HOM05D005046 ORTHO05D006194 7.1e-15 83.6 63 77.8
Thhalv10021793m.g Eutrema salsugineum HOM05D005046 ORTHO05D006194 7.1e-15 83.6 63 76.2
Pp3c15_12430 Physcomitrium patens HOM05D005046 ORTHO05D006194 7.1e-15 83.6 61 77.0
AL3G17660 Arabidopsis lyrata HOM05D005046 ORTHO05D006194 9.3e-15 83.2 63 77.8
AT3G06610 Arabidopsis thaliana HOM05D005046 ORTHO05D006194 9.3e-15 83.2 63 77.8
BNapus_Darmor_BZH_scaffold_118p00040 Brassica napus HOM05D005046 ORTHO05D006194 9.3e-15 83.2 63 77.8
CAN.G158.24 Capsicum annuum HOM05D005046 ORTHO05D006194 1.2e-14 82.8 62 75.8
CARHR081150 Cardamine hirsuta HOM05D005046 ORTHO05D006194 1.2e-14 82.8 63 76.2
Sp3g05540 Schrenkiella parvula HOM05D005046 ORTHO05D006194 1.2e-14 82.8 63 77.8
THA.LOC104818881 Tarenaya hassleriana HOM05D005046 ORTHO05D006194 2.1e-14 82.0 63 74.6
Manes.03G205301 Manihot esculenta HOM05D005046 ORTHO05D006194 3.5e-14 81.3 54 81.5
Carub.0003s0607 Capsella rubella HOM05D005046 ORTHO05D006194 6.0e-14 80.5 63 74.6
SMO304G0028 Selaginella moellendorffii HOM05D005046 ORTHO05D006194 1.0e-13 79.7 70 62.9
Hund11979 Selenicereus undatus HOM05D005046 ORTHO05D006194 1.8e-13 79.0 53 81.1
Potri.008G105000 Populus trichocarpa HOM05D005046 ORTHO05D006194 3.9e-13 77.8 51 86.3
EL10Ac3g05511 Beta vulgaris HOM05D005046 ORTHO05D006194 5.1e-13 77.4 50 82.0
Sc25g0003240 Simmondsia chinensis HOM05D005046 ORTHO05D006194 5.1e-13 77.4 52 82.7
AL3G18870 Arabidopsis lyrata HOM05D005046 ORTHO05D006194 2.5e-12 75.1 62 71.0
Ah.13g071840 Amaranthus hybridus HOM05D005046 ORTHO05D006194 4.3e-12 74.3 50 78.0
Atru.chr4.2993 Acer truncatum HOM05D005046 ORTHO05D006194 7.4e-12 73.6 44 88.6
Nitab4.5_0000496g0080 Nicotiana tabacum HOM05D005046 ORTHO05D006194 7.4e-12 73.6 62 71.0
Mapoly0010s0169 Marchantia polymorpha HOM05D005046 ORTHO05D006194 1.3e-11 72.8 61 68.9
PSO063G6303 Papaver somniferum HOM05D005046 ORTHO05D006194 1.6e-11 72.4 63 61.9
ECA240G2346 Erigeron canadensis HOM05D005046 ORTHO05D006194 1.1e-10 69.7 50 80.0
Nitab4.5_0002294g0080 Nicotiana tabacum HOM05D005046 ORTHO05D006194 4.0e-10 67.8 52 71.2
PSO017G4602 Papaver somniferum HOM05D005046 ORTHO05D006194 5.3e-10 67.4 63 61.9
AUR62016211 Chenopodium quinoa HOM05D005046 ORTHO05D006194 9.0e-10 66.6 55 69.1
AUR62039277 Chenopodium quinoa HOM05D005046 ORTHO05D006194 1.2e-09 66.2 42 81.0
Nitab4.5_0002150g0070 Nicotiana tabacum HOM05D005046 ORTHO05D006194 3.4e-09 64.7 53 67.9
CBR_g51449 Chara braunii HOM05D005046 ORTHO05D006194 7.6e-09 63.5 49 67.3
RcHm_v2.0_Chr5g0023271 Rosa chinensis HOM05D005046 ORTHO05D006194 8.4e-08 60.1 45 73.3
BcaC09g47907 Brassica carinata HOM05D005046 ORTHO05D006194 1.4e-07 59.3 54 68.5


User provided reference genes

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