Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR365G0977 Trochodendron aralioides HOM05D007526 ORTHO05D009350 2.2e-91 339.0 177 100.0
MBI07_g16245_MAGBIO Magnolia biondii HOM05D007526 ORTHO05D009350 5.3e-32 141.7 183 51.4
TAR636G0759 Trochodendron aralioides HOM05D007526 ORTHO05D009350 4.5e-31 138.7 191 49.7
Nn3g19655 Nelumbo nucifera HOM05D007526 ORTHO05D009350 7.6e-31 137.9 232 42.7
Nn1g02762 Nelumbo nucifera HOM05D007526 ORTHO05D009350 1.3e-30 137.1 232 44.4
Aqoxy5G00249 Aquilegia oxysepala HOM05D007526 ORTHO05D009350 1.2e-28 130.6 214 45.3
Cfa022958 Carpinus fangiana HOM05D007526 ORTHO05D009350 1.4e-21 107.1 195 41.5
Atru.chr4.2058 Acer truncatum HOM05D007526 ORTHO05D009350 7.1e-21 104.8 182 40.7
CSS0033898 Camellia sinensis var. sinensis HOM05D007526 ORTHO05D009350 4.6e-20 102.1 193 39.9
QL06p017957 Quercus lobata HOM05D007526 ORTHO05D009350 7.9e-20 101.3 184 45.1
Haze_11381 Corylus avellana HOM05D007526 ORTHO05D009350 8.7e-19 97.8 195 40.0
CSS0016058 Camellia sinensis var. sinensis HOM05D007526 ORTHO05D009350 2.8e-17 92.8 193 38.3
Cc03_g05540 Coffea canephora HOM05D007526 ORTHO05D009350 2.8e-17 92.8 194 39.7
Manes.15G040900 Manihot esculenta HOM05D007526 ORTHO05D009350 1.4e-16 90.5 213 36.6
Lj6g0011756 Lotus japonicus HOM05D007526 ORTHO05D009350 1.8e-16 90.1 184 39.1
QL09p038772 Quercus lobata HOM05D008367 ORTHO05D010529 3.1e-16 89.4 183 35.0
Ciclev10005975m.g Citrus clementina HOM05D007526 ORTHO05D009350 4.1e-16 89.0 188 36.2
CiPaw.01G184600 Carya illinoinensis HOM05D007526 ORTHO05D009350 2.0e-15 86.7 199 38.2
Rhsim04G0182300 Rhododendron simsii HOM05D007526 ORTHO05D009350 1.0e-14 84.3 188 37.8
Glyma.10G181000 Glycine max HOM05D007526 ORTHO05D009350 1.3e-14 84.0 192 36.5
Manes.03G164000 Manihot esculenta HOM05D007526 ORTHO05D009350 1.3e-14 84.0 204 34.8
VMungo0720G1630 Vigna mungo HOM05D007526 ORTHO05D009350 1.3e-14 84.0 195 37.9
Glyma.20G209500 Glycine max HOM05D007526 ORTHO05D009350 1.7e-14 83.6 185 36.8
RcHm_v2.0_Chr4g0393211 Rosa chinensis HOM05D007526 ORTHO05D009350 1.7e-14 83.6 196 36.7
FvH4_4g03670 Fragaria vesca HOM05D007526 ORTHO05D009350 3.8e-14 82.4 196 36.7
Sopen09g033060 Solanum pennellii HOM05D007526 ORTHO05D009350 3.8e-14 82.4 237 31.6
CDE02G1593 Ceratophyllum demersum HOM05D045424 ORTHO05D009350 5.0e-14 82.0 191 38.2
FAN12G2381 Fragaria x ananassa HOM05D007526 ORTHO05D009350 5.0e-14 82.0 196 36.7
Hma1.2p1_0576F.1_g182070 Hydrangea macrophylla HOM05D008367 ORTHO05D010529 5.0e-14 82.0 190 37.9
Oeu055231.1 Olea europaea HOM05D007526 ORTHO05D009350 5.0e-14 82.0 194 38.1
Thecc.04G255400 Theobroma cacao HOM05D007526 ORTHO05D009350 5.0e-14 82.0 199 33.7
Eucgr.H03043 Eucalyptus grandis HOM05D007526 ORTHO05D009350 6.5e-14 81.6 204 36.8
Potri.008G167200 Populus trichocarpa HOM05D007526 ORTHO05D009350 6.5e-14 81.6 201 35.3
FAN17G0331 Fragaria x ananassa HOM05D007526 ORTHO05D009350 1.1e-13 80.9 197 34.5
Potri.005G224200 Populus trichocarpa HOM05D008367 ORTHO05D010529 1.1e-13 80.9 187 39.6
Rhsim01G0263900 Rhododendron simsii HOM05D008367 ORTHO05D010529 1.4e-13 80.5 195 37.4
Haze_24631 Corylus avellana HOM05D008367 ORTHO05D010529 1.9e-13 80.1 172 40.1
Duzib212G0007 Durio zibethinus HOM05D007526 ORTHO05D009350 2.5e-13 79.7 202 34.7
PGSC0003DMG400017266 Solanum tuberosum HOM05D007526 ORTHO05D009350 3.2e-13 79.3 234 32.5
Glyma.20G209600 Glycine max HOM05D007526 ORTHO05D009350 4.2e-13 79.0 176 37.5
Lalb_Chr19g0128211 Lupinus albus HOM05D007526 ORTHO05D009350 4.2e-13 79.0 202 36.6
Gorai.006G253500 Gossypium raimondii HOM05D007526 ORTHO05D009350 5.5e-13 78.6 187 35.3
Potri.002G038400 Populus trichocarpa HOM05D008367 ORTHO05D010529 9.3e-13 77.8 189 38.6
Ciclev10022407m.g Citrus clementina HOM05D008367 ORTHO05D010529 1.2e-12 77.4 186 34.9
Gohir.A09G229800 Gossypium hirsutum HOM05D007526 ORTHO05D009350 1.6e-12 77.0 186 34.4
Duzib151G1045 Durio zibethinus HOM05D007526 ORTHO05D009350 2.7e-12 76.3 209 31.6
Cfa002424 Carpinus fangiana HOM05D008367 ORTHO05D010529 3.5e-12 75.9 188 37.8
Hma1.2p1_0273F.1_g109700 Hydrangea macrophylla HOM05D008367 ORTHO05D010529 1.0e-11 74.3 191 34.0
Actinidia27694 Actinidia chinensis HOM05D008367 ORTHO05D010529 1.3e-11 73.9 153 38.6
Cpa.g.sc44.57 Carica papaya HOM05D007526 ORTHO05D009350 1.3e-11 73.9 184 35.3
Phvul.007G108400 Phaseolus vulgaris HOM05D007526 ORTHO05D009350 1.8e-11 73.6 193 35.2
ATR0736G129 Amborella trichopoda HOM05D007526 ORTHO05D009350 3.9e-11 72.4 262 29.0
arahy.Tifrunner.gnm1.ann1.582VFN Arachis hypogaea HOM05D007526 ORTHO05D009350 3.9e-11 72.4 206 30.1
arahy.Tifrunner.gnm1.ann1.STCN49 Arachis hypogaea HOM05D007526 ORTHO05D009350 3.9e-11 72.4 206 30.1
AUR62015571 Chenopodium quinoa HOM05D007526 ORTHO05D009350 3.9e-11 72.4 208 34.1
Glyma.02G005400 Glycine max HOM05D007526 ORTHO05D009350 5.1e-11 72.0 214 33.2
PGR004G2347 Punica granatum HOM05D007526 ORTHO05D009350 6.7e-11 71.6 205 34.6
Sabra05G0173000 Salix brachista HOM05D008367 ORTHO05D010529 1.1e-10 70.9 185 36.8
Manes.13G034100 Manihot esculenta HOM05D008367 ORTHO05D010529 2.5e-10 69.7 197 34.5
Psat6g104840 Pisum sativum HOM05D007526 ORTHO05D009350 2.5e-10 69.7 186 34.4
Cc01_g18350 Coffea canephora HOM05D008367 ORTHO05D010529 3.3e-10 69.3 206 34.5
MD16G1219200 Malus domestica HOM05D007526 ORTHO05D009350 5.7e-10 68.6 222 29.7
Prupe.1G039600 Prunus persica HOM05D007526 ORTHO05D009350 5.7e-10 68.6 218 31.2
Sabra08G0127400 Salix brachista HOM05D007526 ORTHO05D009350 7.4e-10 68.2 190 33.2
CAN.G896.7 Capsicum annuum HOM05D008367 ORTHO05D010529 9.7e-10 67.8 190 35.8
EL10Ac3g05005 Beta vulgaris HOM05D007526 ORTHO05D009350 1.3e-09 67.4 207 33.8
Duzib138G1787 Durio zibethinus HOM05D008367 ORTHO05D010529 1.3e-09 67.4 196 35.7
TWI09G0237 Tripterygium wilfordii HOM05D007526 ORTHO05D009350 1.3e-09 67.4 197 33.0
MELO3C006420.2 Cucumis melo HOM05D007526 ORTHO05D009350 1.6e-09 67.0 207 33.8
CiPaw.03G264200 Carya illinoinensis HOM05D008367 ORTHO05D010529 2.2e-09 66.6 185 37.8
DCAR_027319 Daucus carota HOM05D007526 ORTHO05D009350 2.2e-09 66.6 195 30.8
Gohir.A07G148700 Gossypium hirsutum HOM05D008367 ORTHO05D010529 2.8e-09 66.2 181 35.4
CsaV3_3G012050 Cucumis sativus L. HOM05D007526 ORTHO05D009350 3.7e-09 65.9 207 33.8
Sabra02G0030800 Salix brachista HOM05D008367 ORTHO05D010529 3.7e-09 65.9 198 34.8
VMungo0720G0856 Vigna mungo HOM05D007526 ORTHO05D009350 3.7e-09 65.9 247 30.0
QL06p018008 Quercus lobata HOM05D007526 ORTHO05D009350 4.8e-09 65.5 111 43.2
Gohir.D07G155080 Gossypium hirsutum HOM05D008367 ORTHO05D010529 6.3e-09 65.1 176 35.8
Gorai.001G177400 Gossypium raimondii HOM05D008367 ORTHO05D010529 6.3e-09 65.1 176 35.8
Glyma.10G006400 Glycine max HOM05D007526 ORTHO05D009350 8.2e-09 64.7 224 31.7
Medtr1g042820 Medicago truncatula HOM05D007526 ORTHO05D009350 8.2e-09 64.7 192 32.3
TPR.G25185 Trifolium pratense HOM05D007526 ORTHO05D009350 8.2e-09 64.7 201 29.4
MD05G1197200 Malus domestica HOM05D008367 ORTHO05D010529 1.1e-08 64.3 186 34.4
Sed0008521 Sechium edule HOM05D007526 ORTHO05D009350 1.1e-08 64.3 194 31.4
MD13G1214200 Malus domestica HOM05D007526 ORTHO05D009350 1.4e-08 63.9 222 33.3
Medtr7g096950 Medicago truncatula HOM05D008367 ORTHO05D010529 1.4e-08 63.9 186 31.2
Lj5g0022077 Lotus japonicus HOM05D007526 ORTHO05D009350 3.1e-08 62.8 208 33.2
RcHm_v2.0_Chr6g0288121 Rosa chinensis HOM05D008367 ORTHO05D010529 3.1e-08 62.8 187 32.1
Psat3g056920 Pisum sativum HOM05D008367 ORTHO05D010529 4.1e-08 62.4 194 35.1
Cpa.g.sc165.10 Carica papaya HOM05D008367 ORTHO05D010529 9.0e-08 61.2 180 35.6
COL.COLO4_05894 Corchorus olitorius HOM05D008367 ORTHO05D010529 9.0e-08 61.2 188 36.7
Phvul.001G161100 Phaseolus vulgaris HOM05D008367 ORTHO05D010529 9.0e-08 61.2 168 39.3
Ca_08676_v3 Cicer arietinum L. HOM05D008367 ORTHO05D010529 4.5e-07 58.9 180 32.2
Ca_08710_v3 Cicer arietinum L. HOM05D008367 ORTHO05D010529 5.9e-07 58.5 180 32.2
Glyma.03G163200 Glycine max HOM05D008367 ORTHO05D010529 5.9e-07 58.5 179 35.8
Thecc.01G258200 Theobroma cacao HOM05D008367 ORTHO05D010529 5.9e-07 58.5 189 32.3
Ah.04g155760 Amaranthus hybridus HOM05D007526 ORTHO05D009350 7.7e-07 58.2 211 32.7
FAN27G3501 Fragaria x ananassa HOM05D004208 ORTHO05D005156 7.7e-07 58.2 184 32.6
Glyma.10G180900 Glycine max HOM05D007526 ORTHO05D009350 7.7e-07 58.2 179 31.8
THA.LOC104808623 Tarenaya hassleriana HOM05D007526 ORTHO05D009350 7.7e-07 58.2 199 32.2
VMungo1383G3617 Vigna mungo HOM05D008367 ORTHO05D010529 7.7e-07 58.2 167 37.1
Ca_08702_v3 Cicer arietinum L. HOM05D008367 ORTHO05D010529 1.3e-06 57.4 181 33.1
Duzib133G0413 Durio zibethinus HOM05D008367 ORTHO05D010529 1.3e-06 57.4 199 33.7
CANSAT78G2320 Cannabis sativa HOM05D007526 ORTHO05D009350 1.7e-06 57.0 233 28.8
Glyma.19G164700 Glycine max HOM05D008367 ORTHO05D010529 1.7e-06 57.0 177 37.3
Actinidia25788 Actinidia chinensis HOM05D008367 ORTHO05D010529 2.2e-06 56.6 187 32.1
Atru.chr5.1688 Acer truncatum HOM05D008367 ORTHO05D010529 5.0e-06 55.5 158 32.9
Actinidia01843 Actinidia chinensis HOM05D007526 ORTHO05D009350 8.5e-06 54.7 65 53.8
Hma1.2p1_0267F.1_g107260 Hydrangea macrophylla HOM05D007526 ORTHO05D009350 8.5e-06 54.7 61 49.2


User provided reference genes

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