Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR365G0933 Trochodendron aralioides HOM05D004018 ORTHO05D004408 0.0e+00 1226.5 655 100.0
TAR365G0909 Trochodendron aralioides HOM05D004018 ORTHO05D004408 0.0e+00 1095.1 600 98.2
TAR633G0135 Trochodendron aralioides HOM05D004018 ORTHO05D004408 2.6e-193 679.5 602 66.1
TAR636G0803 Trochodendron aralioides HOM05D004018 ORTHO05D004408 4.6e-174 615.5 600 63.0
TAR362G1233 Trochodendron aralioides HOM05D004018 ORTHO05D004408 8.2e-155 551.6 499 64.9
Nn4g26185 Nelumbo nucifera HOM05D004018 ORTHO05D004408 4.2e-143 512.7 601 54.2
GSVIVG01011103001 Vitis vinifera HOM05D004018 ORTHO05D004408 8.0e-126 455.3 680 48.1
Cfa006111 Carpinus fangiana HOM05D004018 ORTHO05D004408 8.8e-125 451.8 642 48.1
QL12p022414 Quercus lobata HOM05D004018 ORTHO05D004408 4.5e-121 439.5 653 46.1
Aqoxy2G03257 Aquilegia oxysepala HOM05D004018 ORTHO05D004408 6.1e-118 429.1 622 49.0
Haze_04739 Corylus avellana HOM05D004018 ORTHO05D004408 4.0e-117 426.4 681 45.5
Actinidia09153 Actinidia chinensis HOM05D004018 ORTHO05D004408 5.7e-116 422.5 676 44.7
vmacro02552 Vaccinium macrocarpon HOM05D004018 ORTHO05D004408 3.7e-115 419.9 631 47.4
Duzib138G0587 Durio zibethinus HOM05D004018 ORTHO05D004408 7.0e-114 415.6 636 46.5
Rhsim13G0022700 Rhododendron simsii HOM05D000644 ORTHO05D004408 7.0e-114 415.6 607 48.3
Atru.chr5.1370 Acer truncatum HOM05D004018 ORTHO05D004408 3.2e-111 406.8 682 43.4
Thecc.01G282900 Theobroma cacao HOM05D004018 ORTHO05D004408 7.2e-111 405.6 639 45.4
Gorai.008G005300 Gossypium raimondii HOM05D004018 ORTHO05D004408 8.0e-110 402.1 643 45.1
Gohir.A12G005900 Gossypium hirsutum HOM05D004018 ORTHO05D004408 1.4e-109 401.4 617 45.4
Prupe.8G244100 Prunus persica HOM05D004018 ORTHO05D004408 8.8e-109 398.7 599 48.4
CiPaw.07G093900 Carya illinoinensis HOM05D004018 ORTHO05D004408 6.3e-107 392.5 685 41.8
Duzib133G0055 Durio zibethinus HOM05D004018 ORTHO05D004408 1.1e-106 391.7 638 45.5
Hma1.2p1_0628F.1_g191955 Hydrangea macrophylla HOM05D004018 ORTHO05D004408 1.1e-106 391.7 685 42.3
CSS0042185 Camellia sinensis var. sinensis HOM05D004018 ORTHO05D004408 4.1e-106 389.8 342 65.8
Gohir.D12G005400 Gossypium hirsutum HOM05D004018 ORTHO05D004408 5.4e-106 389.4 617 45.1
Oeu028079.1 Olea europaea HOM05D004018 ORTHO05D004408 2.9e-104 383.6 632 43.2
PSO407G0422 Papaver somniferum HOM05D004018 ORTHO05D004408 4.3e-103 379.8 629 46.7
PSO170G1481 Papaver somniferum HOM05D004018 ORTHO05D004408 7.3e-103 379.0 614 45.8
Ciclev10018884m.g Citrus clementina HOM05D004018 ORTHO05D004408 1.2e-102 378.3 803 38.1
COL.COLO4_09133 Corchorus olitorius HOM05D004018 ORTHO05D004408 1.2e-102 378.3 623 44.6
TWI14G0752 Tripterygium wilfordii HOM05D004018 ORTHO05D004408 1.6e-102 377.9 683 42.3
FAN20G3038 Fragaria x ananassa HOM05D000644 ORTHO05D004408 4.0e-101 373.2 620 43.9
MD03G1268400 Malus domestica HOM05D004018 ORTHO05D004408 4.0e-101 373.2 601 45.6
Actinidia00738 Actinidia chinensis HOM05D004018 ORTHO05D004408 2.9e-99 367.1 399 57.1
Manes.01G209500 Manihot esculenta HOM05D004018 ORTHO05D004408 3.7e-99 366.7 628 43.3
Phvul.007G169800 Phaseolus vulgaris HOM05D004018 ORTHO05D004408 8.3e-99 365.5 620 43.2
MD11G1289200 Malus domestica HOM05D004018 ORTHO05D004408 1.2e-97 361.7 524 48.9
Potri.014G139000 Populus trichocarpa HOM05D004018 ORTHO05D004408 1.2e-97 361.7 613 46.0
Gohir.A08G185500 Gossypium hirsutum HOM05D004018 ORTHO05D004408 2.0e-97 360.9 631 41.2
VMungo0720G2698 Vigna mungo HOM05D004018 ORTHO05D004408 3.5e-97 360.1 622 42.3
Gorai.004G215600 Gossypium raimondii HOM05D004018 ORTHO05D004408 1.7e-96 357.8 598 42.8
Nitab4.5_0011633g0010 Nicotiana tabacum HOM05D004018 ORTHO05D004408 6.6e-96 355.9 643 42.0
RcHm_v2.0_Chr6g0291481 Rosa chinensis HOM05D004018 ORTHO05D004408 8.6e-96 355.5 615 42.9
FAN27G0494 Fragaria x ananassa HOM05D000644 ORTHO05D004408 1.1e-95 355.1 654 41.1
CANSAT25G1423 Cannabis sativa HOM05D004018 ORTHO05D004408 4.7e-94 349.7 614 42.5
FAN24G0467 Fragaria x ananassa HOM05D000644 ORTHO05D004408 8.0e-94 349.0 653 40.9
Ca_09771_v3 Cicer arietinum L. HOM05D004018 ORTHO05D004408 6.8e-93 345.9 628 42.0
Nitab4.5_0001028g0170 Nicotiana tabacum HOM05D004018 ORTHO05D004408 5.8e-92 342.8 638 40.3
MSTRG.12568 Avicennia marina HOM05D004018 ORTHO05D004408 1.3e-91 341.7 637 40.5
Oeu047882.1 Olea europaea HOM05D004018 ORTHO05D004408 1.3e-91 341.7 620 41.3
Eucgr.H01516 Eucalyptus grandis HOM05D004018 ORTHO05D004408 1.7e-91 341.3 609 43.3
Sopen09g026560 Solanum pennellii HOM05D004018 ORTHO05D004408 1.7e-91 341.3 628 41.6
TWI59G1189 Tripterygium wilfordii HOM05D004018 ORTHO05D004408 2.9e-91 340.5 690 40.4
Peaxi162Scf00570g00314 Petunia axillaris HOM05D004018 ORTHO05D004408 3.7e-91 340.1 636 40.7
Solyc09g064860.3 Solanum lycopersicum HOM05D004018 ORTHO05D004408 1.1e-90 338.6 627 41.3
CiPaw.08G103600 Carya illinoinensis HOM05D004018 ORTHO05D004408 1.4e-90 338.2 754 37.1
FvH4_2g23870 Fragaria vesca HOM05D004018 ORTHO05D004408 4.1e-90 336.7 612 42.0
arahy.Tifrunner.gnm1.ann1.6Q7DFN Arachis hypogaea HOM05D004018 ORTHO05D004408 2.7e-89 334.0 610 41.1
THA.LOC104801219 Tarenaya hassleriana HOM05D004018 ORTHO05D004408 2.7e-89 334.0 601 43.8
TPR.G1562 Trifolium pratense HOM05D004018 ORTHO05D004408 6.0e-89 332.8 671 40.2
Lalb_Chr02g0142861 Lupinus albus HOM05D004018 ORTHO05D004408 1.0e-88 332.0 633 41.2
Medtr1g072560 Medicago truncatula HOM05D004018 ORTHO05D004408 1.3e-88 331.6 674 39.5
FAN15G3429 Fragaria x ananassa HOM05D000644 ORTHO05D004408 1.6e-86 324.7 648 40.1
Lalb_Chr21g0306531 Lupinus albus HOM05D004018 ORTHO05D004408 8.1e-86 322.4 631 41.4
Psat6g061120 Pisum sativum HOM05D004018 ORTHO05D004408 1.1e-85 322.0 613 42.3
Cc01_g19730 Coffea canephora HOM05D004018 ORTHO05D004408 1.4e-85 321.6 644 38.7
arahy.Tifrunner.gnm1.ann1.BX9H6P Arachis hypogaea HOM05D004018 ORTHO05D004408 2.3e-85 320.9 610 41.3
SalBow6G7233 Salvia bowleyana HOM05D004018 ORTHO05D004408 6.8e-85 319.3 616 40.3
Sp6g02920 Schrenkiella parvula HOM05D004018 ORTHO05D004408 8.9e-85 318.9 610 41.6
AL6G50040 Arabidopsis lyrata HOM05D004018 ORTHO05D004408 2.6e-84 317.4 607 40.7
AT4G02880 Arabidopsis thaliana HOM05D004018 ORTHO05D004408 4.4e-84 316.6 605 41.7
Carub.0006s3419 Capsella rubella HOM05D004018 ORTHO05D004408 2.2e-83 314.3 599 41.4
Glyma.02G148900 Glycine max HOM05D004018 ORTHO05D004408 2.2e-83 314.3 621 40.6
Lj5g0010123 Lotus japonicus HOM05D004018 ORTHO05D004408 1.1e-82 312.0 624 39.4
Glyma.10G025000 Glycine max HOM05D004018 ORTHO05D004408 1.4e-82 311.6 482 45.2
Thhalv10007330m.g Eutrema salsugineum HOM05D004018 ORTHO05D004408 4.1e-82 310.1 615 41.6
Gohir.D08G203601 Gossypium hirsutum HOM05D004018 ORTHO05D004408 4.1e-82 310.1 299 59.2
AL1G12800 Arabidopsis lyrata HOM05D004018 ORTHO05D004408 7.1e-82 309.3 613 41.3
Sed0023986 Sechium edule HOM05D004018 ORTHO05D004408 7.1e-82 309.3 640 37.5
CARHR251270 Cardamine hirsuta HOM05D004018 ORTHO05D004408 1.6e-81 308.1 600 40.7
SalBow4G1908 Salvia bowleyana HOM05D004018 ORTHO05D004408 2.1e-81 307.8 650 38.3
BcaC03g16187 Brassica carinata HOM05D004018 ORTHO05D004408 2.3e-80 304.3 600 39.7
CARHR002590 Cardamine hirsuta HOM05D004018 ORTHO05D004408 2.3e-80 304.3 629 39.7
Cpa.g.sc837.2 Carica papaya HOM05D004018 ORTHO05D004408 2.3e-80 304.3 268 66.8
BraA02t07491Z Brassica rapa HOM05D004018 ORTHO05D004408 6.6e-80 302.8 598 39.3
C02p39650 Brassica napus HOM05D004018 ORTHO05D004408 1.1e-79 302.0 599 39.9
ECA248G1820 Erigeron canadensis HOM05D004018 ORTHO05D004408 1.5e-79 301.6 639 39.9
Dinv11250 Davidia involucrata HOM05D004018 ORTHO05D004408 2.5e-79 300.8 481 44.5
Migut.D00269 Erythranthe guttata HOM05D004018 ORTHO05D004408 2.5e-79 300.8 611 38.6
A02p25020 Brassica napus HOM05D004018 ORTHO05D004408 3.3e-79 300.4 598 39.3
Sp1g02290 Schrenkiella parvula HOM05D004018 ORTHO05D004408 3.3e-79 300.4 624 39.9
AT1G03290 Arabidopsis thaliana HOM05D004018 ORTHO05D004408 5.6e-79 299.7 607 39.9
Lj2A1177T38 Lonicera japonica HOM05D004018 ORTHO05D004408 5.6e-79 299.7 552 41.8
PGR044G1283 Punica granatum HOM05D004018 ORTHO05D004408 7.3e-79 299.3 622 39.2
Hund28856 Selenicereus undatus HOM05D004018 ORTHO05D004408 2.8e-78 297.4 276 64.5
Hund28858 Selenicereus undatus HOM05D004018 ORTHO05D004408 2.8e-78 297.4 276 64.5
MSTRG.18219 Avicennia marina HOM05D004018 ORTHO05D004408 1.8e-77 294.7 400 47.5
Carub.0001s0240 Capsella rubella HOM05D004018 ORTHO05D004408 1.8e-77 294.7 619 39.3
DCAR_018413 Daucus carota HOM05D004018 ORTHO05D004408 4.0e-77 293.5 616 38.3
Thhalv10028568m.g Eutrema salsugineum HOM05D004018 ORTHO05D004408 4.0e-77 293.5 616 40.3
AUR62036814 Chenopodium quinoa HOM05D004018 ORTHO05D004408 1.5e-76 291.6 646 37.5
ClCG09G006910 Citrullus lanatus HOM05D004018 ORTHO05D004408 3.4e-76 290.4 574 39.9
AUR62033708 Chenopodium quinoa HOM05D004018 ORTHO05D004408 9.9e-76 288.9 634 37.4
MBI17_g12005_MAGBIO Magnolia biondii HOM05D004018 ORTHO05D004408 8.4e-75 285.8 614 38.4
Sed0026091 Sechium edule HOM05D004018 ORTHO05D004408 4.1e-74 283.5 478 43.9
HanXRQChr01g0002351 Helianthus annuus HOM05D004018 ORTHO05D004408 5.4e-74 283.1 555 40.5
MELO3C015856.2 Cucumis melo HOM05D004018 ORTHO05D004408 1.7e-72 278.1 641 38.4
Eucgr.K03388 Eucalyptus grandis HOM05D004018 ORTHO05D004408 8.6e-72 275.8 640 39.5
BcaC05g24644 Brassica carinata HOM05D004018 ORTHO05D004408 1.5e-71 275.0 599 36.9
Migut.N02157 Erythranthe guttata HOM05D004018 ORTHO05D004408 4.3e-71 273.5 610 36.9
DCAR_002748 Daucus carota HOM05D004018 ORTHO05D004408 7.3e-71 272.7 620 36.8
Sc24g0004120 Simmondsia chinensis HOM05D004018 ORTHO05D004408 1.2e-70 271.9 484 41.9
C05p01820 Brassica napus HOM05D003188 ORTHO05D003602 6.2e-70 269.6 632 37.0
BolC2t09981H Brassica oleracea HOM05D004018 ORTHO05D004408 8.9e-69 265.8 340 50.0
BolC3t16038H Brassica oleracea HOM05D004018 ORTHO05D004408 1.3e-67 261.9 598 36.0
ATR0626G273 Amborella trichopoda HOM05D004018 ORTHO05D004408 2.2e-67 261.2 636 35.2
BraA10t42458Z Brassica rapa HOM05D004018 ORTHO05D004408 3.8e-67 260.4 607 36.6
Aa31LG1G9250 Aethionema arabicum HOM05D004018 ORTHO05D004408 4.9e-67 260.0 607 34.3
C03p37460 Brassica napus HOM05D004018 ORTHO05D004408 6.4e-67 259.6 599 37.7
HanXRQChr11g0327641 Helianthus annuus HOM05D004018 ORTHO05D004408 6.4e-67 259.6 569 38.1
SGA_v2.0_scaffold258G45767 Striga asiatica HOM05D004018 ORTHO05D004408 1.1e-66 258.8 663 34.7
A03p30760 Brassica napus HOM05D004018 ORTHO05D004408 1.9e-66 258.1 599 36.2
BraA03t12255Z Brassica rapa HOM05D004018 ORTHO05D004408 1.6e-65 255.0 601 37.1
BolC5t28960H Brassica oleracea HOM05D003188 ORTHO05D003602 2.1e-65 254.6 619 37.2
DCAR_012464 Daucus carota HOM05D000644 ORTHO05D000504 3.9e-64 250.4 634 34.7
EL10Ac7g17209 Beta vulgaris HOM05D004018 ORTHO05D004408 5.6e-63 246.5 623 36.1
A10p01840 Brassica napus HOM05D003188 ORTHO05D003602 5.6e-63 246.5 611 37.3
BcaC05g24546 Brassica carinata HOM05D004018 ORTHO05D004408 6.2e-62 243.0 275 54.2
HPP92_003154 Vanilla planifolia HOM05D004018 ORTHO05D004408 1.3e-59 235.3 608 34.5
Atru.chr12.487 Acer truncatum HOM05D004018 ORTHO05D004408 6.0e-57 226.5 216 63.9
CsaV3_7G028620 Cucumis sativus L. HOM05D004018 ORTHO05D004408 7.9e-57 226.1 621 33.8
Atru.chr12.465 Acer truncatum HOM05D004018 ORTHO05D004408 1.0e-56 225.7 216 63.9
CDE05G3031 Ceratophyllum demersum HOM05D004018 ORTHO05D004408 3.0e-56 224.2 559 34.2
Zm00001eb287880 Zea mays HOM05D004018 ORTHO05D004408 2.2e-51 208.0 328 46.0
Zm00001eb349530 Zea mays HOM05D004018 ORTHO05D004408 1.2e-49 202.2 640 35.0
Pp3c15_12690 Physcomitrium patens HOM05D004018 ORTHO05D004408 3.9e-48 197.2 272 43.4
Sabra02G0167700 Salix brachista HOM05D004018 ORTHO05D004408 3.9e-48 197.2 529 34.4
Sabra14G0104800 Salix brachista HOM05D004018 ORTHO05D004408 6.2e-46 189.9 450 38.2
Lsat_1_v5_gn_5_187400 Lactuca sativa HOM05D004018 ORTHO05D004408 1.4e-45 188.7 610 31.6
Os10g0315400 Oryza sativa ssp. japonica HOM05D004018 ORTHO05D004408 5.3e-45 186.8 232 51.7
Dinv11249 Davidia involucrata HOM05D004018 ORTHO05D004408 1.4e-42 178.7 176 61.4
ECA236G3018 Erigeron canadensis HOM05D004018 ORTHO05D004408 1.4e-42 178.7 249 43.0
CARHR005950 Cardamine hirsuta HOM05D004018 ORTHO05D004408 7.9e-41 172.9 290 45.9
HanXRQChr04g0118801 Helianthus annuus HOM05D004018 ORTHO05D004408 2.1e-38 164.9 285 40.4
SGA_v2.0_scaffold11G05799 Striga asiatica HOM05D004018 ORTHO05D004408 6.9e-37 159.8 604 29.5
Mapoly0005s0053 Marchantia polymorpha HOM05D004018 ORTHO05D004408 3.4e-36 157.5 723 27.7
Pp3c9_12210 Physcomitrium patens HOM05D004018 ORTHO05D004408 1.2e-33 149.1 269 37.2
ECA236G2305 Erigeron canadensis HOM05D004018 ORTHO05D004408 1.5e-31 142.1 190 45.3
HanXRQChr03g0063801 Helianthus annuus HOM05D004018 ORTHO05D004408 7.7e-28 129.8 188 44.1
Ah.08g213040 Amaranthus hybridus HOM05D004018 ORTHO05D004408 5.0e-27 127.1 200 47.0
unitig_0.g1008 Utricularia gibba HOM05D004018 ORTHO05D004408 1.4e-26 125.6 558 27.6
ECA236G2562 Erigeron canadensis HOM05D004018 ORTHO05D004408 3.9e-24 117.5 286 34.6
BcaC03g15959 Brassica carinata HOM05D004018 ORTHO05D004408 5.1e-24 117.1 135 56.3
SMO364G0006 Selaginella moellendorffii HOM05D004018 ORTHO05D004408 2.6e-23 114.8 257 33.5
HanXRQChr03g0063751 Helianthus annuus HOM05D004018 ORTHO05D004408 2.2e-22 111.7 252 37.3
MD11G1124600 Malus domestica HOM05D004018 ORTHO05D004408 3.7e-22 110.9 82 70.7
ECA247G3795 Erigeron canadensis HOM05D004018 ORTHO05D004408 8.5e-19 99.8 191 34.6
C02p37230 Brassica napus HOM05D004018 ORTHO05D004408 7.2e-18 96.7 91 54.9
AagrBONN_evm.TU.Sc2ySwM_228.3859 Anthoceros agrestis HOM05D004018 ORTHO05D004408 1.2e-17 95.9 521 25.5
MBI05_g27108_MAGBIO Magnolia biondii HOM05D004018 ORTHO05D004408 2.1e-17 95.1 76 73.7
Gohir.D01G114520 Gossypium hirsutum HOM05D004018 ORTHO05D004408 7.9e-17 93.2 129 46.5
HanXRQChr03g0063771 Helianthus annuus HOM05D004018 ORTHO05D004408 8.8e-16 89.7 175 39.4
BolC2t09733H Brassica oleracea HOM05D004018 ORTHO05D004408 5.7e-15 87.0 59 67.8
SEGI_03888 Sequoiadendron giganteum HOM05D004018 ORTHO05D004408 7.4e-15 86.7 206 37.4
Gohir.D06G055550 Gossypium hirsutum HOM05D004018 ORTHO05D004408 3.7e-14 84.3 132 43.2
Gorai.007G029100 Gossypium raimondii HOM05D004018 ORTHO05D004408 3.7e-14 84.3 78 56.4
PGR031G1662 Punica granatum HOM05D004018 ORTHO05D004408 9.1e-13 79.7 101 47.5
Os05g0394900 Oryza sativa ssp. japonica HOM05D004018 ORTHO05D004408 3.8e-11 74.3 121 43.8
MBI08_g05535_MAGBIO Magnolia biondii HOM05D001851 ORTHO05D004408 5.5e-10 70.5 70 64.3
Gorai.013G189300 Gossypium raimondii HOM05D004018 ORTHO05D004408 1.6e-09 68.9 188 35.1
MBI19_g13735_MAGBIO Magnolia biondii HOM05D004018 ORTHO05D004408 4.7e-09 67.4 73 61.6
MBI15_g37227_MAGBIO Magnolia biondii HOM05D001851 ORTHO05D004408 8.0e-09 66.6 69 63.8
CBR_g40749 Chara braunii HOM05D004018 ORTHO05D004408 1.0e-08 66.2 203 27.6
MBI18_g25927_MAGBIO Magnolia biondii HOM05D001851 ORTHO05D010670 1.4e-08 65.9 100 48.0
Hund17963 Selenicereus undatus HOM05D004018 ORTHO05D004408 1.8e-08 65.5 401 25.4
Peaxi162Scf00145g00517 Petunia axillaris HOM05D004018 ORTHO05D004408 2.3e-08 65.1 157 38.9
Gohir.D02G151450 Gossypium hirsutum HOM05D004018 ORTHO05D004408 1.5e-07 62.4 89 43.8
Hma1.2p1_0118F.1_g056525 Hydrangea macrophylla HOM05D004018 ORTHO05D004408 1.7e-06 58.9 52 59.6
Hma1.2p1_0118F.1_g056540 Hydrangea macrophylla HOM05D004018 ORTHO05D004408 1.7e-06 58.9 52 59.6
VMungo0720G2446 Vigna mungo HOM05D004018 ORTHO05D004408 1.7e-06 58.9 355 25.6
MBI19_g10807_MAGBIO Magnolia biondii HOM05D001851 ORTHO05D010670 4.8e-06 57.4 137 40.1


User provided reference genes

Program Settings