Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR365G0921 Trochodendron aralioides HOM05D005701 ORTHO05D007058 1.4e-92 342.8 161 100.0
Potri.002G212400 Populus trichocarpa HOM05D005701 ORTHO05D007058 1.1e-81 306.6 161 84.5
Cfa006081 Carpinus fangiana HOM05D005701 ORTHO05D007058 1.6e-80 302.8 161 81.4
Eucgr.H01544 Eucalyptus grandis HOM05D005701 ORTHO05D007058 3.6e-80 301.6 161 83.2
Actinidia24310 Actinidia chinensis HOM05D005701 ORTHO05D007058 1.1e-79 300.1 161 82.0
Ciclev10022400m.g Citrus clementina HOM05D005701 ORTHO05D007058 1.4e-79 299.7 160 83.1
CSS0017429 Camellia sinensis var. sinensis HOM05D005701 ORTHO05D007058 2.3e-79 298.9 161 80.7
PSO302G0130 Papaver somniferum HOM05D005701 ORTHO05D007058 2.3e-79 298.9 161 84.5
QL02p002445 Quercus lobata HOM05D005701 ORTHO05D007058 2.3e-79 298.9 160 83.8
PGR119G1915 Punica granatum HOM05D005701 ORTHO05D007058 5.2e-79 297.7 164 82.9
PSO170G3928 Papaver somniferum HOM05D005701 ORTHO05D007058 6.8e-79 297.4 161 83.9
Rhsim13G0021200 Rhododendron simsii HOM05D005701 ORTHO05D007058 8.9e-79 297.0 161 82.0
ClCG09G006770 Citrullus lanatus HOM05D005701 ORTHO05D007058 1.5e-78 296.2 161 82.6
Dinv11265 Davidia involucrata HOM05D005701 ORTHO05D007058 4.4e-78 294.7 161 80.7
TWI59G0853 Tripterygium wilfordii HOM05D005701 ORTHO05D007058 5.8e-78 294.3 163 82.2
vmacro02538 Vaccinium macrocarpon HOM05D005701 ORTHO05D007058 5.8e-78 294.3 161 80.7
Duzib138G1703 Durio zibethinus HOM05D005701 ORTHO05D007058 2.2e-77 292.4 160 82.5
Haze_04768 Corylus avellana HOM05D005701 ORTHO05D007058 2.9e-77 292.0 183 72.7
Lalb_Chr06g0163181 Lupinus albus HOM05D005701 ORTHO05D007058 2.9e-77 292.0 161 82.0
Gohir.A12G006700 Gossypium hirsutum HOM05D005701 ORTHO05D007058 4.9e-77 291.2 161 82.6
CiPaw.08G102100 Carya illinoinensis HOM05D005701 ORTHO05D007058 6.4e-77 290.8 161 80.1
Glyma.02G150100 Glycine max HOM05D005701 ORTHO05D007058 8.3e-77 290.4 161 80.7
Nn1g02106 Nelumbo nucifera HOM05D005701 ORTHO05D007058 1.1e-76 290.0 147 88.4
Cc01_g05150 Coffea canephora HOM05D005701 ORTHO05D007058 2.4e-76 288.9 162 79.6
Psat6g169920 Pisum sativum HOM05D005701 ORTHO05D007058 2.4e-76 288.9 161 80.7
Peaxi162Scf00783g00418 Petunia axillaris HOM05D005701 ORTHO05D007058 4.1e-76 288.1 161 79.5
Sed0003723 Sechium edule HOM05D005701 ORTHO05D007058 7.1e-76 287.3 161 78.9
Ca_10397_v3 Cicer arietinum L. HOM05D005701 ORTHO05D007058 1.2e-75 286.6 161 78.9
Lj5g0014836 Lotus japonicus HOM05D005701 ORTHO05D007058 1.2e-75 286.6 161 80.1
MELO3C015871.2 Cucumis melo HOM05D005701 ORTHO05D007058 1.6e-75 286.2 162 80.2
GSVIVG01011062001 Vitis vinifera HOM05D005701 ORTHO05D007058 1.6e-75 286.2 153 83.0
Medtr1g089810 Medicago truncatula HOM05D005701 ORTHO05D007058 2.7e-75 285.4 161 78.9
Nitab4.5_0002093g0100 Nicotiana tabacum HOM05D005701 ORTHO05D007058 2.7e-75 285.4 162 78.4
PGSC0003DMG401020044 Solanum tuberosum HOM05D005701 ORTHO05D007058 2.7e-75 285.4 162 78.4
Thecc.01G285600 Theobroma cacao HOM05D005701 ORTHO05D007058 2.7e-75 285.4 161 80.7
Oeu006228.1 Olea europaea HOM05D005701 ORTHO05D007058 3.5e-75 285.0 159 80.5
Aqoxy2G03192 Aquilegia oxysepala HOM05D005701 ORTHO05D007058 4.6e-75 284.6 162 78.4
CAN.G1682.11 Capsicum annuum HOM05D005701 ORTHO05D007058 4.6e-75 284.6 163 77.9
Lsat_1_v5_gn_5_187740 Lactuca sativa HOM05D005701 ORTHO05D007058 4.6e-75 284.6 160 77.5
TPR.G26671 Trifolium pratense HOM05D005701 ORTHO05D007058 1.0e-74 283.5 161 78.3
SalBow6G2366 Salvia bowleyana HOM05D005701 ORTHO05D007058 1.3e-74 283.1 162 75.9
THA.LOC104826003 Tarenaya hassleriana HOM05D005701 ORTHO05D007058 1.3e-74 283.1 161 76.4
HanXRQChr14g0430981 Helianthus annuus HOM05D005701 ORTHO05D007058 1.7e-74 282.7 161 76.4
Nitab4.5_0010603g0020 Nicotiana tabacum HOM05D005701 ORTHO05D007058 1.7e-74 282.7 162 78.4
CsaV3_7G028500 Cucumis sativus L. HOM05D005701 ORTHO05D007058 2.3e-74 282.3 162 79.6
Manes.05G072000 Manihot esculenta HOM05D005701 ORTHO05D007058 3.9e-74 281.6 163 81.0
THA.LOC104801212 Tarenaya hassleriana HOM05D005701 ORTHO05D007058 6.6e-74 280.8 161 76.4
MD11G1292100 Malus domestica HOM05D005701 ORTHO05D007058 8.6e-74 280.4 163 77.9
Migut.N02139 Erythranthe guttata HOM05D005701 ORTHO05D007058 1.1e-73 280.0 163 77.9
Migut.N02175 Erythranthe guttata HOM05D005701 ORTHO05D007058 1.5e-73 279.6 163 77.9
ECA248G0764 Erigeron canadensis HOM05D005701 ORTHO05D007058 1.9e-73 279.3 161 75.2
Phvul.007G168600 Phaseolus vulgaris HOM05D005701 ORTHO05D007058 1.9e-73 279.3 161 77.6
Prupe.8G247700 Prunus persica HOM05D005701 ORTHO05D007058 3.3e-73 278.5 163 78.5
EL10Ac7g17192 Beta vulgaris HOM05D005701 ORTHO05D007058 4.3e-73 278.1 160 76.2
Sc24g0004070 Simmondsia chinensis HOM05D005701 ORTHO05D007058 4.3e-73 278.1 160 76.2
Solyc06g084390.3 Solanum lycopersicum HOM05D005701 ORTHO05D007058 4.3e-73 278.1 162 75.9
Sopen06g035780 Solanum pennellii HOM05D005701 ORTHO05D007058 4.3e-73 278.1 162 75.9
AT4G02980 Arabidopsis thaliana HOM05D005701 ORTHO05D007058 7.3e-73 277.3 161 80.1
Hma1.2p1_0628F.1_g191820 Hydrangea macrophylla HOM05D005701 ORTHO05D007058 1.2e-72 276.6 161 78.3
MSTRG.17433 Avicennia marina HOM05D005701 ORTHO05D007058 1.6e-72 276.2 162 76.5
FAN15G1986 Fragaria x ananassa HOM05D005701 ORTHO05D007058 1.6e-72 276.2 162 77.2
MD03G1271500 Malus domestica HOM05D005701 ORTHO05D007058 2.8e-72 275.4 163 75.5
RcHm_v2.0_Chr6g0291961 Rosa chinensis HOM05D005701 ORTHO05D007058 2.8e-72 275.4 162 79.0
Aa31LG5G2530 Aethionema arabicum HOM05D005701 ORTHO05D007058 4.7e-72 274.6 161 77.0
A09p02300 Brassica napus HOM05D005701 ORTHO05D007058 6.2e-72 274.2 161 78.9
BraA09t35879Z Brassica rapa HOM05D005701 ORTHO05D007058 6.2e-72 274.2 161 78.9
AL6G49950 Arabidopsis lyrata HOM05D005701 ORTHO05D007058 8.1e-72 273.9 161 78.9
FAN20G1753 Fragaria x ananassa HOM05D005701 ORTHO05D007058 1.1e-71 273.5 162 76.5
FAN27G2557 Fragaria x ananassa HOM05D005701 ORTHO05D007058 1.1e-71 273.5 162 76.5
FAN24G1361 Fragaria x ananassa HOM05D005701 ORTHO05D007058 1.8e-71 272.7 162 77.2
CARHR251350 Cardamine hirsuta HOM05D005701 ORTHO05D007058 3.1e-71 271.9 161 77.6
Thhalv10028980m.g Eutrema salsugineum HOM05D005701 ORTHO05D007058 5.2e-71 271.2 161 76.4
Sp6g03020 Schrenkiella parvula HOM05D005701 ORTHO05D007058 5.2e-71 271.2 161 78.9
Hund06566 Selenicereus undatus HOM05D005701 ORTHO05D007058 5.2e-71 271.2 160 76.2
Carub.0006s3407 Capsella rubella HOM05D005701 ORTHO05D007058 6.8e-71 270.8 161 77.6
Ah.08g212880 Amaranthus hybridus HOM05D005701 ORTHO05D007058 1.5e-70 269.6 165 75.2
CANSAT25G0672 Cannabis sativa HOM05D005701 ORTHO05D007058 1.5e-70 269.6 160 76.2
C09p02410 Brassica napus HOM05D005701 ORTHO05D007058 9.9e-70 266.9 162 77.2
BolC9t53172H Brassica oleracea HOM05D005701 ORTHO05D007058 9.9e-70 266.9 162 77.2
BcaC01g06714 Brassica carinata HOM05D005701 ORTHO05D007058 6.4e-69 264.2 161 75.2
C03p37390 Brassica napus HOM05D005701 ORTHO05D007058 6.4e-69 264.2 161 75.2
BolC3t16031H Brassica oleracea HOM05D005701 ORTHO05D007058 6.4e-69 264.2 161 75.2
Lj2A1180T63 Lonicera japonica HOM05D005701 ORTHO05D007058 8.4e-69 263.8 161 75.2
BcaB01g02494 Brassica carinata HOM05D005701 ORTHO05D007058 1.4e-68 263.1 161 75.2
A03p30690 Brassica napus HOM05D005701 ORTHO05D007058 1.9e-68 262.7 161 75.2
BraA03t12248Z Brassica rapa HOM05D005701 ORTHO05D007058 1.9e-68 262.7 161 75.2
ECA248G1579 Erigeron canadensis HOM05D005701 ORTHO05D007058 1.9e-68 262.7 170 68.8
unitig_8.g3319 Utricularia gibba HOM05D005701 ORTHO05D007058 5.4e-68 261.2 162 73.5
HPP92_010620 Vanilla planifolia HOM05D005701 ORTHO05D007058 1.6e-67 259.6 159 73.6
Cc01_g03720 Coffea canephora HOM05D005701 ORTHO05D007058 5.1e-66 254.6 140 81.4
SGA_v2.0_scaffold1G00437 Striga asiatica HOM05D005701 ORTHO05D007058 5.1e-66 254.6 163 69.3
Zm00001eb410800 Zea mays HOM05D005701 ORTHO05D007058 3.3e-65 251.9 159 73.0
CDE08G1024 Ceratophyllum demersum HOM05D005701 ORTHO05D007058 1.2e-64 250.0 159 69.8
Migut.D00251 Erythranthe guttata HOM05D005701 ORTHO05D007058 1.6e-64 249.6 163 68.7
Thecc.01G285700 Theobroma cacao HOM05D005701 ORTHO05D007058 2.1e-64 249.2 161 70.8
Os12g0529400 Oryza sativa ssp. japonica HOM05D005701 ORTHO05D007058 2.8e-64 248.8 159 69.8
AUR62036778 Chenopodium quinoa HOM05D005701 ORTHO05D007058 1.4e-63 246.5 206 57.8
Zm00001eb410760 Zea mays HOM05D005701 ORTHO05D007058 1.2e-62 243.4 165 69.7
BcaB01g01993 Brassica carinata HOM05D005701 ORTHO05D007058 2.0e-62 242.7 143 78.3
Zm00001eb137840 Zea mays HOM05D005701 ORTHO05D007058 3.4e-62 241.9 159 70.4
Manes.01G211300 Manihot esculenta HOM05D005701 ORTHO05D007058 4.9e-61 238.0 128 85.9
SalBow3G3506 Salvia bowleyana HOM05D005701 ORTHO05D007058 7.1e-60 234.2 162 65.4
TPR.G13316 Trifolium pratense HOM05D005701 ORTHO05D007058 1.2e-59 233.4 208 58.2
Atru.chr5.1332 Acer truncatum HOM05D005701 ORTHO05D007058 7.8e-59 230.7 128 82.8
Gorai.008G006100 Gossypium raimondii HOM05D005701 ORTHO05D007058 1.7e-58 229.6 128 82.0
Oeu047892.2 Olea europaea HOM05D005701 ORTHO05D007058 8.7e-58 227.3 243 50.2
VMungo0720G2830 Vigna mungo HOM05D005701 ORTHO05D007058 4.3e-57 224.9 126 79.4
SGA_v2.0_scaffold172G39038 Striga asiatica HOM05D005701 ORTHO05D007058 2.1e-56 222.6 126 77.0
Rhsim13G0021400 Rhododendron simsii HOM05D005701 ORTHO05D007058 4.5e-54 214.9 150 66.7
MSTRG.12575 Avicennia marina HOM05D005701 ORTHO05D007058 4.2e-52 208.4 165 57.6
SMO164G0245 Selaginella moellendorffii HOM05D005701 ORTHO05D007058 3.1e-47 192.2 146 61.0
Pp3c4_12660 Physcomitrium patens HOM05D005701 ORTHO05D007058 5.3e-47 191.4 150 58.0
Cpa.g.sc9.126 Carica papaya HOM05D005701 ORTHO05D007058 6.9e-47 191.0 104 82.7
Cc00_g05320 Coffea canephora HOM05D005701 ORTHO05D007058 9.0e-47 190.7 166 56.0
Pp3c4_12750 Physcomitrium patens HOM05D005701 ORTHO05D007058 1.5e-46 189.9 148 58.1
FvH4_2g24150 Fragaria vesca HOM05D005701 ORTHO05D007058 8.4e-45 184.1 103 79.6
MBI19_g33449_MAGBIO Magnolia biondii HOM05D005701 ORTHO05D007058 3.2e-44 182.2 104 78.8
MBI19_g39288_MAGBIO Magnolia biondii HOM05D005701 ORTHO05D007058 9.3e-44 180.6 103 78.6
vmacro02539 Vaccinium macrocarpon HOM05D005701 ORTHO05D007058 1.3e-42 176.8 104 75.0
Zm00001eb440220 Zea mays HOM05D005701 ORTHO05D007058 3.0e-42 175.6 113 71.7
QL02p081958 Quercus lobata HOM05D005701 ORTHO05D007058 3.9e-42 175.3 111 73.0
CAN.G996.16 Capsicum annuum HOM05D005701 ORTHO05D007058 8.2e-40 167.5 106 67.0
ATR0626G241 Amborella trichopoda HOM05D005701 ORTHO05D007058 1.0e-37 160.6 105 66.7
Gohir.D12G006100 Gossypium hirsutum HOM05D005701 ORTHO05D007058 1.9e-36 156.4 86 82.6
AUR62033690 Chenopodium quinoa HOM05D005701 ORTHO05D007058 3.2e-36 155.6 91 74.7
Zm00001eb410780 Zea mays HOM05D005701 ORTHO05D007058 9.3e-36 154.1 102 70.6
Rhsim13G0021300 Rhododendron simsii HOM05D005701 ORTHO05D007058 1.6e-35 153.3 223 38.6
CBR_g38020 Chara braunii HOM05D005701 ORTHO05D007058 1.3e-34 150.2 120 56.7
Ah.04g164000 Amaranthus hybridus HOM05D005701 ORTHO05D007058 3.7e-32 142.1 90 65.6
AagrBONN_evm.TU.Sc2ySwM_117.1970 Anthoceros agrestis HOM05D005701 ORTHO05D007058 3.7e-32 142.1 131 51.9
Os12g0529300 Oryza sativa ssp. japonica HOM05D005701 ORTHO05D007058 1.2e-30 137.1 84 71.4
C09p02610 Brassica napus HOM05D005701 ORTHO05D007058 8.8e-26 120.9 81 69.1
Lsat_1_v5_gn_4_17561 Lactuca sativa HOM05D005701 ORTHO05D007058 1.3e-21 107.1 96 59.4
CSS0004068 Camellia sinensis var. sinensis HOM05D005701 ORTHO05D007058 3.2e-20 102.4 161 39.1
HPP92_017198 Vanilla planifolia HOM05D005701 ORTHO05D051565 9.4e-20 100.9 158 39.2
Rhsim11G0018300 Rhododendron simsii HOM05D003327 ORTHO05D004535 6.5e-13 78.2 45 77.8


User provided reference genes

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