Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR365G0909 Trochodendron aralioides HOM05D004018 ORTHO05D004408 0.0e+00 1125.9 602 100.0
TAR365G0933 Trochodendron aralioides HOM05D004018 ORTHO05D004408 0.0e+00 1095.9 600 98.2
TAR633G0135 Trochodendron aralioides HOM05D004018 ORTHO05D004408 1.3e-194 683.7 607 66.2
TAR636G0803 Trochodendron aralioides HOM05D004018 ORTHO05D004408 3.3e-179 632.5 603 63.8
TAR362G1233 Trochodendron aralioides HOM05D004018 ORTHO05D004408 6.6e-159 565.1 504 65.7
Nn4g26185 Nelumbo nucifera HOM05D004018 ORTHO05D004408 3.1e-148 529.6 603 55.2
GSVIVG01011103001 Vitis vinifera HOM05D004018 ORTHO05D004408 4.6e-128 462.6 685 48.3
Cfa006111 Carpinus fangiana HOM05D004018 ORTHO05D004408 5.6e-126 455.7 647 48.1
QL12p022414 Quercus lobata HOM05D004018 ORTHO05D004408 4.7e-125 452.6 647 47.4
Actinidia09153 Actinidia chinensis HOM05D004018 ORTHO05D004408 3.0e-119 433.3 681 45.4
Haze_04739 Corylus avellana HOM05D004018 ORTHO05D004408 8.7e-119 431.8 686 45.6
Aqoxy2G03257 Aquilegia oxysepala HOM05D004018 ORTHO05D004408 1.1e-118 431.4 627 49.3
vmacro02552 Vaccinium macrocarpon HOM05D004018 ORTHO05D004408 7.3e-118 428.7 636 48.1
Duzib138G0587 Durio zibethinus HOM05D004018 ORTHO05D004408 4.0e-116 422.9 640 47.2
Atru.chr5.1370 Acer truncatum HOM05D004018 ORTHO05D004408 8.4e-114 415.2 687 44.0
Rhsim13G0022700 Rhododendron simsii HOM05D000644 ORTHO05D004408 4.2e-113 412.9 607 48.4
Thecc.01G282900 Theobroma cacao HOM05D004018 ORTHO05D004408 4.2e-113 412.9 643 46.0
Gorai.008G005300 Gossypium raimondii HOM05D004018 ORTHO05D004408 7.1e-113 412.1 637 45.8
Prupe.8G244100 Prunus persica HOM05D004018 ORTHO05D004408 1.6e-112 411.0 604 49.3
Gohir.A12G005900 Gossypium hirsutum HOM05D004018 ORTHO05D004408 2.1e-112 410.6 621 46.2
Hma1.2p1_0628F.1_g191955 Hydrangea macrophylla HOM05D004018 ORTHO05D004408 3.6e-109 399.8 690 43.0
Gohir.D12G005400 Gossypium hirsutum HOM05D004018 ORTHO05D004408 6.2e-109 399.1 621 45.9
CiPaw.07G093900 Carya illinoinensis HOM05D004018 ORTHO05D004408 1.4e-108 397.9 686 42.1
Duzib133G0055 Durio zibethinus HOM05D004018 ORTHO05D004408 2.4e-108 397.1 638 45.9
Oeu028079.1 Olea europaea HOM05D004018 ORTHO05D004408 2.2e-106 390.6 640 43.8
Ciclev10018884m.g Citrus clementina HOM05D004018 ORTHO05D004408 1.1e-105 388.3 808 38.6
TWI14G0752 Tripterygium wilfordii HOM05D004018 ORTHO05D004408 1.9e-105 387.5 688 43.0
CSS0042185 Camellia sinensis var. sinensis HOM05D004018 ORTHO05D004408 3.2e-105 386.7 342 65.5
COL.COLO4_09133 Corchorus olitorius HOM05D004018 ORTHO05D004408 3.2e-105 386.7 627 45.1
FAN20G3038 Fragaria x ananassa HOM05D000644 ORTHO05D004408 3.0e-103 380.2 625 44.2
Phvul.007G169800 Phaseolus vulgaris HOM05D004018 ORTHO05D004408 5.1e-103 379.4 624 43.6
PSO407G0422 Papaver somniferum HOM05D004018 ORTHO05D004408 6.7e-103 379.0 634 46.5
PSO170G1481 Papaver somniferum HOM05D004018 ORTHO05D004408 1.9e-102 377.5 619 45.6
MD03G1268400 Malus domestica HOM05D004018 ORTHO05D004408 5.6e-102 375.9 601 46.1
VMungo0720G2698 Vigna mungo HOM05D004018 ORTHO05D004408 1.6e-101 374.4 624 42.8
Gohir.A08G185500 Gossypium hirsutum HOM05D004018 ORTHO05D004408 1.1e-100 371.7 635 42.2
Manes.01G209500 Manihot esculenta HOM05D004018 ORTHO05D004408 1.4e-100 371.3 633 43.6
Potri.014G139000 Populus trichocarpa HOM05D004018 ORTHO05D004408 5.3e-100 369.4 609 46.0
Actinidia00738 Actinidia chinensis HOM05D004018 ORTHO05D004408 6.9e-100 369.0 399 57.6
Gorai.004G215600 Gossypium raimondii HOM05D004018 ORTHO05D004408 5.8e-99 365.9 602 43.9
RcHm_v2.0_Chr6g0291481 Rosa chinensis HOM05D004018 ORTHO05D004408 1.3e-98 364.8 620 43.7
Nitab4.5_0011633g0010 Nicotiana tabacum HOM05D004018 ORTHO05D004408 1.7e-98 364.4 639 42.9
FAN27G0494 Fragaria x ananassa HOM05D000644 ORTHO05D004408 8.4e-98 362.1 659 41.4
MD11G1289200 Malus domestica HOM05D004018 ORTHO05D004408 1.9e-97 360.9 524 49.2
CANSAT25G1423 Cannabis sativa HOM05D004018 ORTHO05D004408 3.2e-97 360.1 619 43.1
FAN24G0467 Fragaria x ananassa HOM05D000644 ORTHO05D004408 2.7e-96 357.1 658 41.5
Nitab4.5_0001028g0170 Nicotiana tabacum HOM05D004018 ORTHO05D004408 3.5e-96 356.7 639 41.0
Sopen09g026560 Solanum pennellii HOM05D004018 ORTHO05D004408 1.8e-95 354.4 630 41.9
Ca_09771_v3 Cicer arietinum L. HOM05D004018 ORTHO05D004408 3.0e-95 353.6 632 41.9
Eucgr.H01516 Eucalyptus grandis HOM05D004018 ORTHO05D004408 3.0e-95 353.6 610 43.9
Solyc09g064860.3 Solanum lycopersicum HOM05D004018 ORTHO05D004408 8.7e-95 352.1 629 41.8
MSTRG.12568 Avicennia marina HOM05D004018 ORTHO05D004408 1.5e-94 351.3 641 41.2
Oeu047882.1 Olea europaea HOM05D004018 ORTHO05D004408 1.5e-94 351.3 624 41.8
Peaxi162Scf00570g00314 Petunia axillaris HOM05D004018 ORTHO05D004408 1.5e-94 351.3 639 41.2
CiPaw.08G103600 Carya illinoinensis HOM05D004018 ORTHO05D004408 2.5e-94 350.5 756 37.7
TWI59G1189 Tripterygium wilfordii HOM05D004018 ORTHO05D004408 2.5e-94 350.5 695 41.2
THA.LOC104801219 Tarenaya hassleriana HOM05D004018 ORTHO05D004408 4.3e-94 349.7 600 44.7
Lalb_Chr02g0142861 Lupinus albus HOM05D004018 ORTHO05D004408 4.8e-93 346.3 638 42.2
arahy.Tifrunner.gnm1.ann1.6Q7DFN Arachis hypogaea HOM05D004018 ORTHO05D004408 6.3e-93 345.9 615 42.3
FvH4_2g23870 Fragaria vesca HOM05D004018 ORTHO05D004408 1.4e-92 344.7 617 42.6
TPR.G1562 Trifolium pratense HOM05D004018 ORTHO05D004408 7.6e-91 339.0 677 40.6
Medtr1g072560 Medicago truncatula HOM05D004018 ORTHO05D004408 1.3e-90 338.2 679 39.8
Lalb_Chr21g0306531 Lupinus albus HOM05D004018 ORTHO05D004408 1.4e-89 334.7 635 41.7
arahy.Tifrunner.gnm1.ann1.BX9H6P Arachis hypogaea HOM05D004018 ORTHO05D004408 9.3e-89 332.0 613 42.1
FAN15G3429 Fragaria x ananassa HOM05D000644 ORTHO05D004408 1.2e-88 331.6 642 40.8
Psat6g061120 Pisum sativum HOM05D004018 ORTHO05D004408 4.6e-88 329.7 613 42.6
Cc01_g19730 Coffea canephora HOM05D004018 ORTHO05D004408 3.0e-87 327.0 649 38.8
SalBow6G7233 Salvia bowleyana HOM05D004018 ORTHO05D004408 3.0e-87 327.0 617 40.5
AL6G50040 Arabidopsis lyrata HOM05D004018 ORTHO05D004408 8.7e-87 325.5 608 40.6
Sp6g02920 Schrenkiella parvula HOM05D004018 ORTHO05D004408 5.7e-86 322.8 614 41.2
Carub.0006s3419 Capsella rubella HOM05D004018 ORTHO05D004408 9.7e-86 322.0 602 41.5
Glyma.02G148900 Glycine max HOM05D004018 ORTHO05D004408 1.3e-85 321.6 621 40.9
AT4G02880 Arabidopsis thaliana HOM05D004018 ORTHO05D004408 2.8e-85 320.5 602 41.2
Thhalv10007330m.g Eutrema salsugineum HOM05D004018 ORTHO05D004408 6.3e-85 319.3 613 41.9
AL1G12800 Arabidopsis lyrata HOM05D004018 ORTHO05D004408 1.1e-84 318.5 615 41.3
Lj5g0010123 Lotus japonicus HOM05D004018 ORTHO05D004408 1.4e-84 318.2 629 39.9
SalBow4G1908 Salvia bowleyana HOM05D004018 ORTHO05D004408 2.4e-84 317.4 640 38.8
Sed0023986 Sechium edule HOM05D004018 ORTHO05D004408 2.4e-84 317.4 645 38.0
CARHR002590 Cardamine hirsuta HOM05D004018 ORTHO05D004408 3.4e-83 313.5 631 40.1
Sp1g02290 Schrenkiella parvula HOM05D004018 ORTHO05D004408 3.4e-83 313.5 622 40.2
Dinv11250 Davidia involucrata HOM05D004018 ORTHO05D004408 7.7e-83 312.4 474 46.0
PGR044G1283 Punica granatum HOM05D004018 ORTHO05D004408 7.7e-83 312.4 627 40.4
CARHR251270 Cardamine hirsuta HOM05D004018 ORTHO05D004408 1.3e-82 311.6 602 40.5
Gohir.D08G203601 Gossypium hirsutum HOM05D004018 ORTHO05D004408 1.7e-82 311.2 299 60.5
Migut.D00269 Erythranthe guttata HOM05D004018 ORTHO05D004408 6.5e-82 309.3 616 38.6
Glyma.10G025000 Glycine max HOM05D004018 ORTHO05D004408 8.5e-82 308.9 481 45.1
BcaC03g16187 Brassica carinata HOM05D004018 ORTHO05D004408 1.1e-81 308.5 602 39.7
ECA248G1820 Erigeron canadensis HOM05D004018 ORTHO05D004408 2.5e-81 307.4 630 40.5
BraA02t07491Z Brassica rapa HOM05D004018 ORTHO05D004408 3.2e-81 307.0 600 39.3
AT1G03290 Arabidopsis thaliana HOM05D004018 ORTHO05D004408 4.2e-81 306.6 609 39.9
C02p39650 Brassica napus HOM05D004018 ORTHO05D004408 4.2e-81 306.6 601 39.9
A02p25020 Brassica napus HOM05D004018 ORTHO05D004408 1.6e-80 304.7 600 39.3
Cpa.g.sc837.2 Carica papaya HOM05D004018 ORTHO05D004408 2.1e-80 304.3 267 67.0
DCAR_018413 Daucus carota HOM05D004018 ORTHO05D004408 4.6e-80 303.1 618 39.2
Carub.0001s0240 Capsella rubella HOM05D004018 ORTHO05D004408 6.1e-80 302.8 605 40.5
AUR62036814 Chenopodium quinoa HOM05D004018 ORTHO05D004408 3.0e-79 300.4 651 37.9
AUR62033708 Chenopodium quinoa HOM05D004018 ORTHO05D004408 3.9e-79 300.1 639 38.0
MSTRG.18219 Avicennia marina HOM05D004018 ORTHO05D004408 5.1e-79 299.7 397 48.9
Lj2A1177T38 Lonicera japonica HOM05D004018 ORTHO05D004408 1.1e-78 298.5 552 41.8
MBI17_g12005_MAGBIO Magnolia biondii HOM05D004018 ORTHO05D004408 3.3e-78 297.0 619 38.9
Hund28856 Selenicereus undatus HOM05D004018 ORTHO05D004408 1.3e-77 295.0 276 64.5
Hund28858 Selenicereus undatus HOM05D004018 ORTHO05D004408 1.3e-77 295.0 276 64.5
Thhalv10028568m.g Eutrema salsugineum HOM05D004018 ORTHO05D004408 4.8e-77 293.1 618 40.0
ClCG09G006910 Citrullus lanatus HOM05D004018 ORTHO05D004408 1.1e-76 292.0 643 37.9
Eucgr.K03388 Eucalyptus grandis HOM05D004018 ORTHO05D004408 3.1e-76 290.4 645 40.5
Sed0026091 Sechium edule HOM05D004018 ORTHO05D004408 9.1e-76 288.9 478 43.7
BcaC05g24644 Brassica carinata HOM05D004018 ORTHO05D004408 1.5e-75 288.1 603 37.8
Sc24g0004120 Simmondsia chinensis HOM05D004018 ORTHO05D004408 5.9e-75 286.2 489 42.9
MELO3C015856.2 Cucumis melo HOM05D004018 ORTHO05D004408 2.2e-74 284.3 642 38.8
DCAR_002748 Daucus carota HOM05D004018 ORTHO05D004408 2.9e-74 283.9 622 37.5
HanXRQChr01g0002351 Helianthus annuus HOM05D004018 ORTHO05D004408 5.0e-74 283.1 555 40.4
Migut.N02157 Erythranthe guttata HOM05D004018 ORTHO05D004408 4.2e-73 280.0 606 37.3
C05p01820 Brassica napus HOM05D003188 ORTHO05D003602 7.2e-73 279.3 608 38.2
SGA_v2.0_scaffold258G45767 Striga asiatica HOM05D004018 ORTHO05D004408 5.2e-71 273.1 665 35.3
BraA10t42458Z Brassica rapa HOM05D004018 ORTHO05D004408 8.8e-71 272.3 605 36.5
Aa31LG1G9250 Aethionema arabicum HOM05D004018 ORTHO05D004408 3.3e-70 270.4 609 34.3
BolC2t09981H Brassica oleracea HOM05D004018 ORTHO05D004408 3.3e-70 270.4 603 38.3
BolC3t16038H Brassica oleracea HOM05D004018 ORTHO05D004408 2.8e-69 267.3 600 36.0
HanXRQChr11g0327641 Helianthus annuus HOM05D004018 ORTHO05D004408 8.2e-69 265.8 572 38.5
C03p37460 Brassica napus HOM05D004018 ORTHO05D004408 2.4e-68 264.2 601 37.8
ATR0626G273 Amborella trichopoda HOM05D004018 ORTHO05D004408 3.1e-68 263.8 634 35.3
BolC5t28960H Brassica oleracea HOM05D003188 ORTHO05D003602 3.1e-68 263.8 609 36.9
A03p30760 Brassica napus HOM05D004018 ORTHO05D004408 5.3e-68 263.1 603 36.5
A10p01840 Brassica napus HOM05D003188 ORTHO05D003602 7.7e-67 259.2 609 37.3
BraA03t12255Z Brassica rapa HOM05D004018 ORTHO05D004408 7.7e-67 259.2 603 37.3
DCAR_012464 Daucus carota HOM05D000644 ORTHO05D000504 1.5e-65 255.0 631 34.7
EL10Ac7g17209 Beta vulgaris HOM05D004018 ORTHO05D004408 4.7e-64 250.0 623 36.3
BcaC05g24546 Brassica carinata HOM05D004018 ORTHO05D004408 6.7e-63 246.1 272 55.1
HPP92_003154 Vanilla planifolia HOM05D004018 ORTHO05D004408 1.7e-61 241.5 607 35.1
CDE05G3031 Ceratophyllum demersum HOM05D004018 ORTHO05D004408 1.0e-58 232.3 564 34.6
CsaV3_7G028620 Cucumis sativus L. HOM05D004018 ORTHO05D004408 1.3e-58 231.9 622 34.7
Atru.chr12.487 Acer truncatum HOM05D004018 ORTHO05D004408 1.0e-55 222.2 216 63.9
Atru.chr12.465 Acer truncatum HOM05D004018 ORTHO05D004408 1.8e-55 221.5 216 63.9
Zm00001eb287880 Zea mays HOM05D004018 ORTHO05D004408 3.7e-53 213.8 323 47.1
Sabra02G0167700 Salix brachista HOM05D004018 ORTHO05D004408 4.5e-51 206.8 534 34.8
Zm00001eb349530 Zea mays HOM05D004018 ORTHO05D004408 7.7e-51 206.1 634 35.6
Lsat_1_v5_gn_5_187400 Lactuca sativa HOM05D004018 ORTHO05D004408 8.6e-50 202.6 615 32.2
Sabra14G0104800 Salix brachista HOM05D004018 ORTHO05D004408 9.5e-49 199.1 455 38.7
Pp3c15_12690 Physcomitrium patens HOM05D004018 ORTHO05D004408 2.1e-48 198.0 272 43.8
Os10g0315400 Oryza sativa ssp. japonica HOM05D004018 ORTHO05D004408 3.4e-46 190.7 234 53.0
ECA236G3018 Erigeron canadensis HOM05D004018 ORTHO05D004408 5.0e-42 176.8 249 43.0
CARHR005950 Cardamine hirsuta HOM05D004018 ORTHO05D004408 1.9e-41 174.9 287 45.6
Dinv11249 Davidia involucrata HOM05D004018 ORTHO05D004408 9.5e-41 172.6 176 61.4
HanXRQChr04g0118801 Helianthus annuus HOM05D004018 ORTHO05D004408 3.0e-39 167.5 307 39.4
SGA_v2.0_scaffold11G05799 Striga asiatica HOM05D004018 ORTHO05D004408 7.5e-38 162.9 601 29.8
Mapoly0005s0053 Marchantia polymorpha HOM05D004018 ORTHO05D004408 6.4e-37 159.8 733 26.7
Pp3c9_12210 Physcomitrium patens HOM05D004018 ORTHO05D004408 1.5e-33 148.7 269 37.2
ECA236G2305 Erigeron canadensis HOM05D004018 ORTHO05D004408 1.2e-30 139.0 232 39.7
HanXRQChr03g0063801 Helianthus annuus HOM05D004018 ORTHO05D004408 1.9e-28 131.7 188 44.7
unitig_0.g1008 Utricularia gibba HOM05D004018 ORTHO05D004408 5.4e-28 130.2 570 28.1
Ah.08g213040 Amaranthus hybridus HOM05D004018 ORTHO05D004408 9.2e-28 129.4 200 47.0
HanXRQChr03g0063751 Helianthus annuus HOM05D004018 ORTHO05D004408 1.2e-24 119.0 219 39.3
BcaC03g15959 Brassica carinata HOM05D004018 ORTHO05D004408 4.7e-24 117.1 135 56.3
ECA236G2562 Erigeron canadensis HOM05D004018 ORTHO05D004408 8.1e-24 116.3 286 35.7
SMO364G0006 Selaginella moellendorffii HOM05D004018 ORTHO05D004408 1.8e-23 115.2 250 33.6
MD11G1124600 Malus domestica HOM05D004018 ORTHO05D004408 3.4e-22 110.9 82 70.7
ECA247G3795 Erigeron canadensis HOM05D004018 ORTHO05D004408 4.6e-19 100.5 191 35.1
C02p37230 Brassica napus HOM05D004018 ORTHO05D004408 3.0e-18 97.8 91 56.0
AagrBONN_evm.TU.Sc2ySwM_228.3859 Anthoceros agrestis HOM05D004018 ORTHO05D004408 6.6e-18 96.7 522 25.5
MBI05_g27108_MAGBIO Magnolia biondii HOM05D004018 ORTHO05D004408 6.6e-18 96.7 76 75.0
SEGI_03888 Sequoiadendron giganteum HOM05D004018 ORTHO05D004408 3.3e-17 94.4 103 54.4
Gohir.D01G114520 Gossypium hirsutum HOM05D004018 ORTHO05D004408 9.5e-17 92.8 129 46.5
HanXRQChr03g0063771 Helianthus annuus HOM05D004018 ORTHO05D004408 4.7e-16 90.5 175 40.0
BolC2t09733H Brassica oleracea HOM05D004018 ORTHO05D004408 6.8e-15 86.7 59 67.8
Gorai.007G029100 Gossypium raimondii HOM05D004018 ORTHO05D004408 1.2e-14 85.9 78 57.7
Gohir.D06G055550 Gossypium hirsutum HOM05D004018 ORTHO05D004408 3.4e-14 84.3 132 43.2
PGR031G1662 Punica granatum HOM05D004018 ORTHO05D004408 4.9e-13 80.5 101 50.5
Hund17963 Selenicereus undatus HOM05D004018 ORTHO05D004408 1.2e-11 75.9 404 27.2
Os05g0394900 Oryza sativa ssp. japonica HOM05D004018 ORTHO05D004408 5.1e-10 70.5 141 41.1
VMungo0720G2446 Vigna mungo HOM05D004018 ORTHO05D004408 5.1e-10 70.5 360 26.7
MBI08_g05535_MAGBIO Magnolia biondii HOM05D001851 ORTHO05D004408 6.6e-10 70.1 70 64.3
Gorai.013G189300 Gossypium raimondii HOM05D004018 ORTHO05D004408 8.7e-10 69.7 187 35.8
MBI19_g13735_MAGBIO Magnolia biondii HOM05D004018 ORTHO05D004408 5.6e-09 67.0 78 59.0
MBI15_g37227_MAGBIO Magnolia biondii HOM05D001851 ORTHO05D004408 7.3e-09 66.6 69 63.8
Peaxi162Scf00145g00517 Petunia axillaris HOM05D004018 ORTHO05D004408 7.3e-09 66.6 157 39.5
Hma1.2p1_0118F.1_g056525 Hydrangea macrophylla HOM05D004018 ORTHO05D004408 1.6e-08 65.5 57 59.6
Hma1.2p1_0118F.1_g056540 Hydrangea macrophylla HOM05D004018 ORTHO05D004408 1.6e-08 65.5 57 59.6
MBI18_g25927_MAGBIO Magnolia biondii HOM05D001851 ORTHO05D010670 1.6e-08 65.5 105 46.7
BcaC05g24545 Brassica carinata HOM05D001026 ORTHO05D007776 2.8e-08 64.7 49 67.3
MBI19_g10807_MAGBIO Magnolia biondii HOM05D001851 ORTHO05D010670 4.7e-08 63.9 68 61.8
Gohir.D02G151450 Gossypium hirsutum HOM05D004018 ORTHO05D004408 1.4e-07 62.4 89 43.8
CBR_g40749 Chara braunii HOM05D004018 ORTHO05D004408 1.8e-07 62.0 252 27.8
AT5G64980 Arabidopsis thaliana HOM05D008017 ORTHO05D009829 3.1e-07 61.2 85 41.2
Carub.0008s2581 Capsella rubella HOM05D008017 ORTHO05D009829 9.0e-07 59.7 80 41.2
AL8G42480 Arabidopsis lyrata HOM05D008017 ORTHO05D009829 1.5e-06 58.9 85 40.0
C03p61050 Brassica napus HOM05D008017 ORTHO05D009829 5.8e-06 57.0 79 46.8
BolC3t18367H Brassica oleracea HOM05D008017 ORTHO05D009829 5.8e-06 57.0 79 46.8


User provided reference genes

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