Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR365G0848 Trochodendron aralioides HOM05D003628 ORTHO05D004253 0.0e+00 1293.5 748 100.0
TAR633G2428 Trochodendron aralioides HOM05D003628 ORTHO05D004253 9.8e-221 770.8 817 62.5
TAR362G1171 Trochodendron aralioides HOM05D003628 ORTHO05D004253 4.7e-207 725.3 786 57.9
Dinv27142 Davidia involucrata HOM05D003628 ORTHO05D004253 2.7e-194 682.9 794 55.0
GSVIVG01029001001 Vitis vinifera HOM05D003628 ORTHO05D004253 5.3e-174 615.5 802 51.9
Dinv29776 Davidia involucrata HOM05D003628 ORTHO05D004253 6.7e-169 598.6 646 60.5
Nn1g03063 Nelumbo nucifera HOM05D003628 ORTHO05D004253 1.3e-167 594.3 803 49.8
QL06p022355 Quercus lobata HOM05D003628 ORTHO05D004253 8.1e-167 591.7 789 51.7
CiPaw.01G174500 Carya illinoinensis HOM05D003628 ORTHO05D004253 4.8e-159 565.8 792 53.4
Hma1.2p1_1241F.1_g269760 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 9.0e-158 561.6 798 47.5
Atru.chr4.1847 Acer truncatum HOM05D003628 ORTHO05D004253 7.1e-155 552.0 806 48.8
MBI05_g37047_MAGBIO Magnolia biondii HOM05D003628 ORTHO05D004253 2.3e-153 547.0 811 53.0
Rhsim02G0049400 Rhododendron simsii HOM05D003628 ORTHO05D004253 1.6e-151 540.8 803 52.7
Actinidia39943 Actinidia chinensis HOM05D003628 ORTHO05D004253 5.3e-150 535.8 803 47.3
RcHm_v2.0_Chr4g0396341 Rosa chinensis HOM05D003628 ORTHO05D004253 2.2e-148 530.4 793 51.8
Thecc.04G217100 Theobroma cacao HOM05D003628 ORTHO05D004253 1.3e-143 514.6 759 53.9
Manes.15G048200 Manihot esculenta HOM05D003628 ORTHO05D004253 2.2e-140 503.8 780 45.9
PSO832G4023 Papaver somniferum HOM05D003628 ORTHO05D004253 1.9e-139 500.7 796 46.7
CSS0020381 Camellia sinensis var. sinensis HOM05D003628 ORTHO05D004253 1.6e-138 497.7 692 54.8
FAN22G0313 Fragaria x ananassa HOM05D003628 ORTHO05D004253 1.8e-137 494.2 798 44.7
Duzib212G0614 Durio zibethinus HOM05D003628 ORTHO05D004253 2.0e-136 490.7 760 50.8
Gorai.011G164000 Gossypium raimondii HOM05D003628 ORTHO05D004253 3.1e-134 483.4 755 46.0
Potri.010G062000 Populus trichocarpa HOM05D003628 ORTHO05D004253 4.1e-134 483.0 783 44.8
PSO764G0031 Papaver somniferum HOM05D003628 ORTHO05D004253 1.2e-133 481.5 796 45.5
Ciclev10004333m.g Citrus clementina HOM05D003628 ORTHO05D004253 2.6e-133 480.3 805 49.9
Haze_11526 Corylus avellana HOM05D003628 ORTHO05D004253 4.5e-133 479.6 859 41.0
Gorai.006G218800 Gossypium raimondii HOM05D003628 ORTHO05D004253 5.9e-133 479.2 762 48.6
Duzib151G0300 Durio zibethinus HOM05D003628 ORTHO05D004253 1.3e-132 478.0 763 51.2
CANSAT78G2050 Cannabis sativa HOM05D003628 ORTHO05D004253 3.8e-132 476.5 789 43.7
CSS0021427 Camellia sinensis var. sinensis HOM05D003628 ORTHO05D004253 8.5e-132 475.3 810 42.6
FvH4_4g05311 Fragaria vesca HOM05D003628 ORTHO05D004253 2.5e-131 473.8 797 48.1
Prupe.1G054700 Prunus persica HOM05D003628 ORTHO05D004253 3.2e-131 473.4 794 50.8
Manes.03G155400 Manihot esculenta HOM05D003628 ORTHO05D004253 1.2e-130 471.5 778 46.4
Gohir.D10G146700 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.6e-130 471.1 754 45.2
TWI73G0229 Tripterygium wilfordii HOM05D003628 ORTHO05D004253 1.6e-130 471.1 778 44.1
Cc03_g07010 Coffea canephora HOM05D003628 ORTHO05D004253 1.4e-129 468.0 790 45.2
FAN07G2212 Fragaria x ananassa HOM05D003628 ORTHO05D004253 1.8e-129 467.6 795 47.5
Gohir.A09G201200 Gossypium hirsutum HOM05D003628 ORTHO05D004253 2.8e-127 460.3 763 47.3
Gohir.D09G195400 Gossypium hirsutum HOM05D003628 ORTHO05D004253 2.8e-127 460.3 757 46.8
CsaV3_2G012280 Cucumis sativus L. HOM05D003628 ORTHO05D004253 2.4e-126 457.2 809 44.5
TWI09G0941 Tripterygium wilfordii HOM05D003628 ORTHO05D004253 3.5e-125 453.4 756 43.9
MELO3C023064.2 Cucumis melo HOM05D003628 ORTHO05D004253 1.3e-124 451.4 813 48.1
vmacro15908 Vaccinium macrocarpon HOM05D003628 ORTHO05D004253 3.8e-124 449.9 794 48.7
Gohir.A02G025400 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.1e-123 448.4 751 43.4
Cfa014840 Carpinus fangiana HOM05D003628 ORTHO05D004253 4.0e-121 439.9 788 47.6
Ca_11787_v3 Cicer arietinum L. HOM05D003628 ORTHO05D004253 8.8e-121 438.7 778 42.8
MD16G1232700 Malus domestica HOM05D003628 ORTHO05D004253 1.5e-120 438.0 800 48.2
Gorai.005G036000 Gossypium raimondii HOM05D003628 ORTHO05D004253 2.0e-120 437.6 759 42.6
Potri.008G174800 Populus trichocarpa HOM05D003628 ORTHO05D004253 2.0e-120 437.6 759 49.0
MSTRG.4198 Avicennia marina HOM05D003628 ORTHO05D004253 1.3e-119 434.9 770 46.4
Lj6g0006649 Lotus japonicus HOM05D003628 ORTHO05D004253 1.7e-119 434.5 764 41.4
Peaxi162Scf01007g00014 Petunia axillaris HOM05D003628 ORTHO05D004253 2.2e-119 434.1 808 41.3
Sabra10G0044300 Salix brachista HOM05D006620 ORTHO05D008921 2.8e-119 433.7 755 42.4
Hma1.2p1_0574F.1_g181510 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 4.1e-118 429.9 470 55.5
Sed0002438 Sechium edule HOM05D003628 ORTHO05D004253 1.2e-117 428.3 824 45.9
Nitab4.5_0002738g0080 Nicotiana tabacum HOM05D003628 ORTHO05D004253 1.0e-116 425.2 808 41.5
Eucgr.H00111 Eucalyptus grandis HOM05D003628 ORTHO05D004253 2.9e-116 423.7 806 46.7
ATR0580G379 Amborella trichopoda HOM05D003628 ORTHO05D004253 8.5e-116 422.2 801 41.2
TPR.G23641 Trifolium pratense HOM05D003628 ORTHO05D004253 5.5e-115 419.5 781 40.5
arahy.Tifrunner.gnm1.ann1.STBA65 Arachis hypogaea HOM05D003628 ORTHO05D004253 7.2e-115 419.1 768 41.3
Glyma.20G079600 Glycine max HOM05D003628 ORTHO05D004253 9.4e-115 418.7 777 40.2
Lalb_Chr03g0036821 Lupinus albus HOM05D003628 ORTHO05D004253 2.7e-114 417.2 799 40.7
PGR142G1422 Punica granatum HOM05D003628 ORTHO05D004253 3.6e-114 416.8 764 45.0
Lalb_Chr01g0011261 Lupinus albus HOM05D003628 ORTHO05D004253 1.0e-113 415.2 785 40.4
Migut.G00600 Erythranthe guttata HOM05D003628 ORTHO05D004253 6.8e-113 412.5 792 43.7
DCAR_027362 Daucus carota HOM05D003628 ORTHO05D004253 1.2e-112 411.8 781 46.1
Peaxi162Scf00047g00163 Petunia axillaris HOM05D003628 ORTHO05D004253 1.5e-112 411.4 794 45.8
Nitab4.5_0001998g0040 Nicotiana tabacum HOM05D003628 ORTHO05D004253 5.7e-112 409.5 823 39.9
Nitab4.5_0000451g0120 Nicotiana tabacum HOM05D003628 ORTHO05D004253 9.8e-112 408.7 814 45.9
CiPaw.02G103800 Carya illinoinensis HOM05D003628 ORTHO05D004253 2.2e-111 407.5 431 63.3
Gohir.D02G032600 Gossypium hirsutum HOM05D003628 ORTHO05D004253 8.3e-111 405.6 759 40.6
Lalb_Chr19g0128621 Lupinus albus HOM05D003628 ORTHO05D004253 1.2e-109 401.7 783 43.0
Phvul.007G238700 Phaseolus vulgaris HOM05D003628 ORTHO05D004253 5.9e-109 399.4 779 45.4
Sabra08G0133300 Salix brachista HOM05D003628 ORTHO05D004253 5.9e-109 399.4 790 41.1
Sed0008500 Sechium edule HOM05D003628 ORTHO05D004253 3.8e-108 396.7 816 46.1
CAN.G566.2 Capsicum annuum HOM05D003628 ORTHO05D004253 1.9e-107 394.4 803 39.5
Psat6g109680 Pisum sativum HOM05D003628 ORTHO05D004253 9.5e-107 392.1 783 39.7
FAN12G2520 Fragaria x ananassa HOM05D003628 ORTHO05D004253 1.6e-106 391.3 978 35.4
Sopen12g032860 Solanum pennellii HOM05D003628 ORTHO05D004253 2.1e-106 391.0 815 38.8
Solyc12g097070.3 Solanum lycopersicum HOM05D003628 ORTHO05D004253 6.1e-106 389.4 815 38.7
arahy.Tifrunner.gnm1.ann1.7KG1FV Arachis hypogaea HOM05D003628 ORTHO05D004253 3.0e-105 387.1 768 39.5
Lj3A630T50 Lonicera japonica HOM05D003628 ORTHO05D004253 3.0e-105 387.1 708 44.8
Nn3g19840 Nelumbo nucifera HOM05D003628 ORTHO05D004253 4.0e-105 386.7 775 41.4
Medtr1g046350 Medicago truncatula HOM05D003628 ORTHO05D004253 3.4e-104 383.6 779 38.4
Sc19g0002160 Simmondsia chinensis HOM05D003628 ORTHO05D004253 4.9e-103 379.8 766 40.7
THA.LOC104804570 Tarenaya hassleriana HOM05D003628 ORTHO05D004253 6.3e-103 379.4 780 43.8
Aqoxy1G00125 Aquilegia oxysepala HOM05D003628 ORTHO05D004253 5.4e-102 376.3 805 43.0
Sopen09g034100 Solanum pennellii HOM05D003628 ORTHO05D004253 2.7e-101 374.0 779 45.8
ClCG06G007410 Citrullus lanatus HOM05D003628 ORTHO05D004253 3.5e-101 373.6 808 44.1
Solyc09g091120.3 Solanum lycopersicum HOM05D003628 ORTHO05D004253 2.9e-100 370.5 813 44.3
THA.LOC104821624 Tarenaya hassleriana HOM05D003628 ORTHO05D004253 2.8e-98 364.0 773 39.7
CAN.G812.46 Capsicum annuum HOM05D003628 ORTHO05D004253 3.0e-97 360.5 765 45.8
EL10Ac3g06305 Beta vulgaris HOM05D003628 ORTHO05D004253 3.7e-95 353.6 779 38.6
ECA234G0302 Erigeron canadensis HOM05D003628 ORTHO05D004253 1.7e-92 344.7 508 55.3
HanXRQChr12g0359881 Helianthus annuus HOM05D003628 ORTHO05D004253 5.6e-91 339.7 511 56.0
HanXRQChr10g0311151 Helianthus annuus HOM05D003628 ORTHO05D004253 8.0e-90 335.9 550 52.2
AUR62030025 Chenopodium quinoa HOM05D003628 ORTHO05D004253 3.1e-89 334.0 782 37.2
Sp3g21980 Schrenkiella parvula HOM05D003628 ORTHO05D004253 4.9e-87 326.6 775 41.4
CDE07G1740 Ceratophyllum demersum HOM05D003628 ORTHO05D004253 1.1e-86 325.5 797 42.2
Lsat_1_v5_gn_5_148361 Lactuca sativa HOM05D003628 ORTHO05D004253 1.7e-84 318.2 595 48.1
HPP92_014197 Vanilla planifolia HOM05D003628 ORTHO05D004253 8.6e-84 315.8 790 41.5
AUR62002607 Chenopodium quinoa HOM05D003628 ORTHO05D004253 1.5e-83 315.1 368 54.3
VMungo0720G2372 Vigna mungo HOM05D003628 ORTHO05D004253 1.5e-83 315.1 756 37.3
BcaB03g14597 Brassica carinata HOM05D003628 ORTHO05D004253 5.6e-83 313.2 516 46.3
Carub.0003s2454 Capsella rubella HOM05D003628 ORTHO05D004253 1.6e-82 311.6 769 40.8
BcaB06g26600 Brassica carinata HOM05D003628 ORTHO05D004253 2.8e-82 310.8 511 48.1
AT3G23980 Arabidopsis thaliana HOM05D003628 ORTHO05D004253 4.7e-82 310.1 776 41.4
SGA_v2.0_scaffold57G20181 Striga asiatica HOM05D003628 ORTHO05D004253 5.2e-81 306.6 760 35.7
HPP92_026454 Vanilla planifolia HOM05D003628 ORTHO05D004253 2.6e-80 304.3 600 48.5
Thhalv10002420m.g Eutrema salsugineum HOM05D003628 ORTHO05D004253 3.4e-80 303.9 768 38.8
Ah.07g204120 Amaranthus hybridus HOM05D003628 ORTHO05D004253 9.9e-80 302.4 738 36.4
Aa31LG8G10920 Aethionema arabicum HOM05D003628 ORTHO05D004253 1.7e-79 301.6 762 42.8
BcaB04g20394 Brassica carinata HOM05D003628 ORTHO05D004253 2.9e-79 300.8 373 57.4
C07p12290 Brassica napus HOM05D003628 ORTHO05D004253 1.1e-78 298.9 519 47.4
BcaC06g35665 Brassica carinata HOM05D003628 ORTHO05D004253 2.4e-78 297.7 489 50.7
BolC7t41696H Brassica oleracea HOM05D003628 ORTHO05D004253 5.4e-78 296.6 679 42.1
AL3G39530 Arabidopsis lyrata HOM05D003628 ORTHO05D004253 2.7e-77 294.3 785 40.0
A03p43510 Brassica napus HOM05D003628 ORTHO05D004253 7.8e-77 292.7 531 50.1
A07p08160 Brassica napus HOM05D003628 ORTHO05D004253 7.8e-77 292.7 564 45.7
C07p12320 Brassica napus HOM05D003628 ORTHO05D004253 3.0e-76 290.8 673 40.4
Os01g0911800 Oryza sativa ssp. japonica HOM05D003628 ORTHO05D004253 1.1e-75 288.9 520 47.1
BraA03t13490Z Brassica rapa HOM05D003628 ORTHO05D004253 2.5e-75 287.7 533 49.7
Zm00001eb143670 Zea mays HOM05D003628 ORTHO05D004253 9.5e-75 285.8 775 39.7
Cpa.g.sc59.57 Carica papaya HOM05D003628 ORTHO05D004253 1.6e-74 285.0 640 43.3
BraA07t28601Z Brassica rapa HOM05D003628 ORTHO05D004253 4.7e-74 283.5 577 37.4
unitig_748.g7341 Utricularia gibba HOM05D003628 ORTHO05D004253 2.6e-72 277.7 763 34.2
Zm00001eb365010 Zea mays HOM05D003628 ORTHO05D004253 4.9e-71 273.5 780 37.3
BcaC01g03342 Brassica carinata HOM05D003628 ORTHO05D004253 4.6e-69 266.9 499 47.9
CARHR100260 Cardamine hirsuta HOM05D003628 ORTHO05D004253 6.6e-68 263.1 795 38.7
BcaC06g35667 Brassica carinata HOM05D003628 ORTHO05D004253 2.0e-64 251.5 492 45.1
Glyma.10G128350 Glycine max HOM05D003628 ORTHO05D004253 1.7e-63 248.4 296 51.7
BolC3t17608H Brassica oleracea HOM05D003628 ORTHO05D004253 4.9e-63 246.9 499 44.5
C03p53470 Brassica napus HOM05D003628 ORTHO05D004253 8.4e-63 246.1 499 43.7
Lj6A641G44 Lonicera japonica HOM05D003628 ORTHO05D004253 9.6e-59 232.6 638 34.5
Hund12227 Selenicereus undatus HOM05D003628 ORTHO05D004253 1.8e-49 201.8 554 35.6
Nitab4.5_0003287g0020 Nicotiana tabacum HOM05D003628 ORTHO05D004253 4.5e-48 197.2 572 35.5
Actinidia11386 Actinidia chinensis HOM05D003628 ORTHO05D004253 1.3e-44 185.7 506 34.0
CDE04G0520 Ceratophyllum demersum HOM05D003628 ORTHO05D004253 5.1e-44 183.7 349 49.9
Oeu012942.2 Olea europaea HOM05D003628 ORTHO05D004253 3.3e-43 181.0 167 61.1
SEGI_10173 Sequoiadendron giganteum HOM05D003628 ORTHO05D004253 1.9e-38 165.2 387 49.1
Oeu023151.1 Olea europaea HOM05D003628 ORTHO05D004253 7.4e-35 153.3 113 69.9
MD13G1227500 Malus domestica HOM05D003628 ORTHO05D004253 1.9e-30 138.7 100 74.0
AagrBONN_evm.TU.Sc2ySwM_362.1684 Anthoceros agrestis HOM05D003628 ORTHO05D004253 9.4e-30 136.3 425 31.1
Glyma.10G128300 Glycine max HOM05D003628 ORTHO05D004253 9.4e-30 136.3 434 30.4
Mapoly0068s0063 Marchantia polymorpha HOM05D003628 ORTHO05D004253 3.6e-29 134.4 547 28.2
Hma1.2p1_0112F.1_g055040 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 3.9e-28 131.0 171 52.0
Pp3c20_15710 Physcomitrium patens HOM05D003628 ORTHO05D004253 5.1e-28 130.6 422 28.9
SMO116G0337 Selaginella moellendorffii HOM05D003628 ORTHO05D004253 1.9e-27 128.6 345 36.8
Actinidia11385 Actinidia chinensis HOM05D003628 ORTHO05D004253 2.2e-26 125.2 92 72.8
Pp3c24_10590 Physcomitrium patens HOM05D003628 ORTHO05D004253 3.7e-26 124.4 421 27.8
Hma1.2p1_0112F.1_g055050 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 8.2e-26 123.2 188 45.2
Cpa.g.sc59.56 Carica papaya HOM05D003628 ORTHO05D004253 7.7e-24 116.7 108 60.2
CBR_g38414 Chara braunii HOM05D003628 ORTHO05D004253 1.0e-20 106.3 544 27.2
Gohir.D09G057732 Gossypium hirsutum HOM05D003628 ORTHO05D004253 2.0e-19 102.1 68 80.9
Gohir.D04G116566 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.4e-17 95.9 66 77.3
Hund12233 Selenicereus undatus HOM05D003628 ORTHO05D004253 5.9e-16 90.5 74 67.6
Pp3c23_8100 Physcomitrium patens HOM05D003628 ORTHO05D004253 7.7e-16 90.1 436 24.3
Oeu023150.1 Olea europaea HOM05D003628 ORTHO05D004253 4.2e-14 84.3 55 70.9
Gohir.D08G165950 Gossypium hirsutum HOM05D003628 ORTHO05D004253 8.0e-13 80.1 50 84.0
Gorai.013G043600 Gossypium raimondii HOM05D003628 ORTHO05D004253 8.0e-13 80.1 50 84.0
MBI04_g25319_MAGBIO Magnolia biondii HOM05D003628 ORTHO05D004253 8.0e-13 80.1 139 40.3
PGSC0003DMG402011586 Solanum tuberosum HOM05D003628 ORTHO05D004253 6.7e-12 77.0 62 62.9
AL2G14740 Arabidopsis lyrata HOM05D000013 ORTHO05D000011 1.4e-09 69.3 47 74.5
SHI00869 Sapria himalayana HOM05D003628 ORTHO05D004253 1.6e-08 65.9 76 50.0
Gohir.D11G226200 Gossypium hirsutum HOM05D003628 ORTHO05D004253 2.6e-08 65.1 41 80.5
Gorai.007G071000 Gossypium raimondii HOM05D003628 ORTHO05D004253 5.9e-08 63.9 42 76.2
Gohir.D03G086101 Gossypium hirsutum HOM05D003628 ORTHO05D004253 7.7e-08 63.5 49 67.3
Gorai.007G244100 Gossypium raimondii HOM05D003628 ORTHO05D004253 7.7e-08 63.5 41 78.0
Gorai.003G076100 Gossypium raimondii HOM05D005297 ORTHO05D006545 1.7e-07 62.4 49 67.3
Ah.14g082010 Amaranthus hybridus HOM05D003628 ORTHO05D004253 2.9e-07 61.6 40 75.0
AagrBONN_evm.TU.Sc2ySwM_344.5018 Anthoceros agrestis HOM05D003628 ORTHO05D004253 2.9e-07 61.6 89 39.3
Gohir.A11G239380 Gossypium hirsutum HOM05D003628 ORTHO05D004253 2.9e-07 61.6 39 76.9
Gohir.D01G060866 Gossypium hirsutum HOM05D003628 ORTHO05D004253 2.9e-07 61.6 39 76.9
Gorai.009G342200 Gossypium raimondii HOM05D003628 ORTHO05D016264 3.8e-07 61.2 37 81.1
Gohir.D08G175500 Gossypium hirsutum HOM05D003628 ORTHO05D004253 8.5e-07 60.1 39 74.4
Gohir.D06G084232 Gossypium hirsutum HOM05D003628 ORTHO05D016264 1.1e-06 59.7 37 78.4
Cre12.g514550 Chlamydomonas reinhardtii HOM05D003628 ORTHO05D004253 1.9e-06 58.9 95 36.8
Gohir.D01G077750 Gossypium hirsutum HOM05D003628 ORTHO05D004253 2.5e-06 58.5 39 74.4
Gorai.003G055900 Gossypium raimondii HOM05D005297 ORTHO05D006545 5.5e-06 57.4 59 54.2


User provided reference genes

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