Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR365G0845 Trochodendron aralioides HOM05D006926 ORTHO05D008863 2.3e-24 117.1 295 100.0
Actinidia40273 Actinidia chinensis HOM05D006926 ORTHO05D008863 1.9e-18 97.4 50 96.0
Lj9C380T3 Lonicera japonica HOM05D006926 ORTHO05D008863 1.9e-18 97.4 50 96.0
Rhsim04G0222900 Rhododendron simsii HOM05D006926 ORTHO05D008863 3.2e-18 96.7 50 96.0
vmacro08158 Vaccinium macrocarpon HOM05D006926 ORTHO05D008863 3.2e-18 96.7 50 96.0
CSS0048032 Camellia sinensis var. sinensis HOM05D006926 ORTHO05D008863 7.2e-18 95.5 50 96.0
CAN.G185.37 Capsicum annuum HOM05D006926 ORTHO05D008863 2.7e-17 93.6 50 90.0
Nitab4.5_0000059g0440 Nicotiana tabacum HOM05D006926 ORTHO05D008863 2.7e-17 93.6 50 90.0
Nitab4.5_0005852g0010 Nicotiana tabacum HOM05D006926 ORTHO05D008863 2.7e-17 93.6 50 90.0
PGSC0003DMG400006295 Solanum tuberosum HOM05D006926 ORTHO05D008863 2.7e-17 93.6 50 90.0
GSVIVG01017733001 Vitis vinifera HOM05D006926 ORTHO05D008863 3.6e-17 93.2 50 92.0
DCAR_006643 Daucus carota HOM05D006926 ORTHO05D008863 4.7e-17 92.8 50 90.0
QL06p009008 Quercus lobata HOM05D006926 ORTHO05D008863 4.7e-17 92.8 48 93.8
Cc00_g07570 Coffea canephora HOM05D006926 ORTHO05D008863 8.0e-17 92.0 50 88.0
Sopen01g030780 Solanum pennellii HOM05D006926 ORTHO05D008863 1.4e-16 91.3 50 88.0
Solyc01g080720.4 Solanum lycopersicum HOM05D006926 ORTHO05D008863 1.8e-16 90.9 49 87.8
Peaxi162Scf01123g00213 Petunia axillaris HOM05D006926 ORTHO05D008863 4.0e-16 89.7 48 89.6
Haze_01195 Corylus avellana HOM05D006926 ORTHO05D008863 5.2e-16 89.4 47 91.5
Atru.chr4.2848 Acer truncatum HOM05D006926 ORTHO05D008863 6.8e-16 89.0 48 91.7
CSS0040550 Camellia sinensis var. sinensis HOM05D006926 ORTHO05D008863 1.2e-15 88.2 50 90.0
Cfa015391 Carpinus fangiana HOM05D006926 ORTHO05D008863 1.2e-15 88.2 45 93.3
CiPaw.01G148200 Carya illinoinensis HOM05D006926 ORTHO05D008863 1.2e-15 88.2 47 89.4
RcHm_v2.0_Chr4g0422371 Rosa chinensis HOM05D006926 ORTHO05D008863 1.2e-15 88.2 48 91.7
FvH4_4g18230 Fragaria vesca HOM05D006926 ORTHO05D008863 3.4e-15 86.7 48 89.6
FAN12G2558 Fragaria x ananassa HOM05D006926 ORTHO05D008863 3.4e-15 86.7 48 89.6
FAN12G4333 Fragaria x ananassa HOM05D006926 ORTHO05D008863 3.4e-15 86.7 48 89.6
Prupe.1G135500 Prunus persica HOM05D006926 ORTHO05D008863 3.4e-15 86.7 45 93.3
ECA233G5048 Erigeron canadensis HOM05D006926 ORTHO05D008863 4.4e-15 86.3 50 80.0
Lalb_Chr10g0107371 Lupinus albus HOM05D006926 ORTHO05D008863 4.4e-15 86.3 47 87.2
Ca_06384_v3 Cicer arietinum L. HOM05D006926 ORTHO05D008863 5.7e-15 85.9 47 85.1
Ca_29965_v3 Cicer arietinum L. HOM05D006926 ORTHO05D008863 5.7e-15 85.9 47 85.1
Ciclev10007037m.g Citrus clementina HOM05D006926 ORTHO05D008863 5.7e-15 85.9 48 87.5
Glyma.02G298900 Glycine max HOM05D006926 ORTHO05D008863 5.7e-15 85.9 47 87.2
Oeu029705.1 Olea europaea HOM05D006926 ORTHO05D008863 7.5e-15 85.5 45 91.1
Sabra10G0009000 Salix brachista HOM05D006926 ORTHO05D008863 7.5e-15 85.5 46 89.1
Gohir.A09G238600 Gossypium hirsutum HOM05D006926 ORTHO05D008863 9.7e-15 85.1 47 89.4
Thecc.04G285300 Theobroma cacao HOM05D006926 ORTHO05D008863 9.7e-15 85.1 47 87.2
COL.COLO4_13863 Corchorus olitorius HOM05D006926 ORTHO05D008863 1.3e-14 84.7 46 87.0
TWI09G0560 Tripterygium wilfordii HOM05D006926 ORTHO05D008863 1.3e-14 84.7 47 87.2
VMungo0647G0525 Vigna mungo HOM05D006926 ORTHO05D008863 1.7e-14 84.3 47 85.1
Migut.G00155 Erythranthe guttata HOM05D006926 ORTHO05D008863 2.2e-14 84.0 47 87.2
Phvul.008G277600 Phaseolus vulgaris HOM05D006926 ORTHO05D008863 2.2e-14 84.0 47 87.2
Gohir.D09G239500 Gossypium hirsutum HOM05D006926 ORTHO05D008863 2.8e-14 83.6 47 87.2
Gorai.006G262300 Gossypium raimondii HOM05D006926 ORTHO05D008863 2.8e-14 83.6 47 87.2
MD08G1066700 Malus domestica HOM05D006926 ORTHO05D008863 2.8e-14 83.6 44 90.9
HanXRQChr05g0150001 Helianthus annuus HOM05D006926 ORTHO05D008863 4.8e-14 82.8 50 78.0
Potri.010G014100 Populus trichocarpa HOM05D006926 ORTHO05D008863 4.8e-14 82.8 45 88.9
CsaV3_3G014680 Cucumis sativus L. HOM05D006926 ORTHO05D008863 6.3e-14 82.4 44 86.4
MSTRG.10097 Avicennia marina HOM05D006926 ORTHO05D008863 8.3e-14 82.0 49 85.7
Eucgr.C02193 Eucalyptus grandis HOM05D006926 ORTHO05D008863 8.3e-14 82.0 47 87.2
Lsat_1_v5_gn_8_31281 Lactuca sativa HOM05D006926 ORTHO05D008863 1.4e-13 81.3 49 75.5
TPR.G14145 Trifolium pratense HOM05D006926 ORTHO05D008863 1.8e-13 80.9 47 80.9
Cpa.g.sc16.177 Carica papaya HOM05D006926 ORTHO05D008863 2.4e-13 80.5 48 87.5
LjContig00081g0009495 Lotus japonicus HOM05D006926 ORTHO05D008863 2.4e-13 80.5 47 80.9
PGR031G3585 Punica granatum HOM05D006926 ORTHO05D008863 2.4e-13 80.5 47 85.1
Lalb_Chr17g0348851 Lupinus albus HOM05D006926 ORTHO05D008863 3.1e-13 80.1 46 82.6
ClCG05G006130 Citrullus lanatus HOM05D006926 ORTHO05D008863 1.6e-12 77.8 43 83.7
Thhalv10020026m.g Eutrema salsugineum HOM05D006926 ORTHO05D008863 2.0e-12 77.4 48 77.1
Sp3g05870 Schrenkiella parvula HOM05D006926 ORTHO05D008863 2.0e-12 77.4 48 77.1
Psat2g008440 Pisum sativum HOM05D006926 ORTHO05D008863 3.5e-12 76.6 44 81.8
arahy.Tifrunner.gnm1.ann1.DI2NU4 Arachis hypogaea HOM05D006926 ORTHO05D008863 5.9e-12 75.9 42 83.3
arahy.Tifrunner.gnm1.ann1.R7Y0VJ Arachis hypogaea HOM05D006926 ORTHO05D008863 5.9e-12 75.9 42 83.3
CARHR081530 Cardamine hirsuta HOM05D006926 ORTHO05D008863 7.7e-12 75.5 48 75.0
Carub.0003s0644 Capsella rubella HOM05D006926 ORTHO05D008863 1.0e-11 75.1 48 75.0
Zm00001eb304410 Zea mays HOM05D006926 ORTHO05D008863 1.0e-11 75.1 49 77.6
Aa31LG5G17490 Aethionema arabicum HOM05D006926 ORTHO05D008863 2.2e-11 73.9 48 72.9
BolC3t16524H Brassica oleracea HOM05D006926 ORTHO05D008863 2.9e-11 73.6 47 70.2
CANSAT78G1021 Cannabis sativa HOM05D006926 ORTHO05D008863 2.9e-11 73.6 41 85.4
Os07g0249100 Oryza sativa ssp. japonica HOM05D006926 ORTHO05D008863 2.9e-11 73.6 47 80.9
THA.LOC104818923 Tarenaya hassleriana HOM05D006926 ORTHO05D008863 5.0e-11 72.8 48 77.1
AL3G18090 Arabidopsis lyrata HOM05D006926 ORTHO05D008863 6.5e-11 72.4 48 70.8
Medtr5g095130 Medicago truncatula HOM05D006926 ORTHO05D008863 6.5e-11 72.4 42 81.0
Sed0000576 Sechium edule HOM05D006926 ORTHO05D008863 8.5e-11 72.0 43 76.7
A03p34960 Brassica napus HOM05D006926 ORTHO05D008863 1.1e-10 71.6 46 69.6
AT3G06920 Arabidopsis thaliana HOM05D006926 ORTHO05D008863 1.5e-10 71.2 48 70.8
THA.LOC104827343 Tarenaya hassleriana HOM05D006926 ORTHO05D008863 1.5e-10 71.2 48 75.0
C03p42540 Brassica napus HOM05D006926 ORTHO05D008863 2.5e-10 70.5 44 70.5
BraA03t12676Z Brassica rapa HOM05D006926 ORTHO05D008863 2.5e-10 70.5 44 70.5
Hund12224 Selenicereus undatus HOM05D006926 ORTHO05D008863 2.5e-10 70.5 44 75.0
SHI00269 Sapria himalayana HOM05D006926 ORTHO05D008863 7.2e-10 68.9 41 78.0
AUR62035127 Chenopodium quinoa HOM05D006926 ORTHO05D008863 9.4e-10 68.6 44 70.5
AUR62040613 Chenopodium quinoa HOM05D006926 ORTHO05D008863 9.4e-10 68.6 44 70.5
MBI01_g30450_MAGBIO Magnolia biondii HOM05D006926 ORTHO05D008863 9.4e-10 68.6 44 77.3
PSO302G0177 Papaver somniferum HOM05D006926 ORTHO05D008863 1.2e-09 68.2 45 77.8
Sc10g0006430 Simmondsia chinensis HOM05D006926 ORTHO05D008863 1.6e-09 67.8 41 80.5
ATR0796G196 Amborella trichopoda HOM05D006926 ORTHO05D008863 1.0e-08 65.1 46 69.6
EL10Ac1g01925 Beta vulgaris HOM05D006926 ORTHO05D008863 1.0e-08 65.1 40 72.5
SGA_v2.0_scaffold67G22630 Striga asiatica HOM05D006926 ORTHO05D008863 2.3e-08 63.9 35 80.0
Manes.03G195800 Manihot esculenta HOM05D006926 ORTHO05D008863 3.0e-08 63.5 45 71.1
Sed0021384 Sechium edule HOM05D006926 ORTHO05D008863 3.0e-08 63.5 45 66.7
Nn1g09562 Nelumbo nucifera HOM05D006926 ORTHO05D008863 4.4e-07 59.7 49 55.1
SMO114G0059 Selaginella moellendorffii HOM05D020070 ORTHO05D020998 6.3e-06 55.8 43 53.5


User provided reference genes

Program Settings