Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR365G0807 Trochodendron aralioides HOM05D001069 ORTHO05D007586 8.6e-35 149.8 79 100.0
TAR636G2667 Trochodendron aralioides HOM05D001069 ORTHO05D001549 2.1e-20 102.1 61 86.9
CSS0013670 Camellia sinensis var. sinensis HOM05D001069 ORTHO05D007586 2.3e-19 98.6 61 83.6
CSS0018717 Camellia sinensis var. sinensis HOM05D001069 ORTHO05D007586 2.3e-19 98.6 61 83.6
GSVIVG01036275001 Vitis vinifera HOM05D001069 ORTHO05D007586 2.3e-19 98.6 61 83.6
Nn1g02583 Nelumbo nucifera HOM05D001069 ORTHO05D007586 5.1e-19 97.4 61 82.0
MSTRG.20449 Avicennia marina HOM05D001069 ORTHO05D007586 6.6e-19 97.1 61 80.3
Cfa006409 Carpinus fangiana HOM05D001069 ORTHO05D001549 6.6e-19 97.1 61 82.0
CiPaw.08G122900 Carya illinoinensis HOM05D001069 ORTHO05D007586 6.6e-19 97.1 61 80.3
Haze_04370 Corylus avellana HOM05D001069 ORTHO05D007586 6.6e-19 97.1 61 82.0
VMungo0720G0790 Vigna mungo HOM05D001069 ORTHO05D007586 8.7e-19 96.7 61 80.3
COL.COLO4_15368 Corchorus olitorius HOM05D001069 ORTHO05D007586 1.1e-18 96.3 61 82.0
Thecc.05G281200 Theobroma cacao HOM05D001069 ORTHO05D007586 1.1e-18 96.3 61 82.0
Manes.09G151800 Manihot esculenta HOM05D001069 ORTHO05D007586 1.5e-18 95.9 61 78.7
Actinidia32808 Actinidia chinensis HOM05D001069 ORTHO05D007586 2.5e-18 95.1 61 80.3
Duzib128G0644 Durio zibethinus HOM05D001069 ORTHO05D007586 2.5e-18 95.1 61 80.3
Eucgr.H04324 Eucalyptus grandis HOM05D001069 ORTHO05D007586 2.5e-18 95.1 61 80.3
Sabra13G0038700 Salix brachista HOM05D001069 ORTHO05D007586 2.5e-18 95.1 61 82.0
Glyma.20G225500 Glycine max HOM05D001069 ORTHO05D007586 3.3e-18 94.7 61 77.0
Prupe.6G344500 Prunus persica HOM05D001069 ORTHO05D007586 3.3e-18 94.7 61 78.7
Gohir.A13G104300 Gossypium hirsutum HOM05D001069 ORTHO05D007586 4.3e-18 94.4 61 80.3
Gohir.D13G107700 Gossypium hirsutum HOM05D001069 ORTHO05D007586 4.3e-18 94.4 61 80.3
Gorai.013G120600 Gossypium raimondii HOM05D001069 ORTHO05D007586 4.3e-18 94.4 61 80.3
TWI12G0612 Tripterygium wilfordii HOM05D001069 ORTHO05D007586 5.6e-18 94.0 61 80.3
Phvul.007G187900 Phaseolus vulgaris HOM05D001069 ORTHO05D007586 7.3e-18 93.6 61 78.7
Sabra05G0047400 Salix brachista HOM05D001069 ORTHO05D001549 7.3e-18 93.6 61 78.7
SGA_v2.0_scaffold5G02970 Striga asiatica HOM05D001069 ORTHO05D007586 7.3e-18 93.6 61 77.0
Aqoxy2G00949 Aquilegia oxysepala HOM05D001069 ORTHO05D007586 9.6e-18 93.2 61 80.3
CiPaw.07G068400 Carya illinoinensis HOM05D001069 ORTHO05D007586 9.6e-18 93.2 61 77.0
Lj5g0026442 Lotus japonicus HOM05D001069 ORTHO05D007586 9.6e-18 93.2 61 75.4
MD12G1242900 Malus domestica HOM05D001069 ORTHO05D007586 9.6e-18 93.2 61 77.0
Manes.08G135700 Manihot esculenta HOM05D001069 ORTHO05D007586 9.6e-18 93.2 61 78.7
PGR004G2600 Punica granatum HOM05D001069 ORTHO05D007586 9.6e-18 93.2 61 78.7
Lalb_Chr06g0168091 Lupinus albus HOM05D001069 ORTHO05D007586 1.3e-17 92.8 61 77.0
Lalb_Chr21g0311011 Lupinus albus HOM05D001069 ORTHO05D007586 1.3e-17 92.8 61 75.4
Nitab4.5_0001592g0010 Nicotiana tabacum HOM05D001069 ORTHO05D007586 1.3e-17 92.8 61 77.0
Potri.005G054500 Populus trichocarpa HOM05D001069 ORTHO05D007586 1.3e-17 92.8 61 77.0
Duzib177G1121 Durio zibethinus HOM05D001069 ORTHO05D007586 1.6e-17 92.4 61 78.7
FAN09G0270 Fragaria x ananassa HOM05D001069 ORTHO05D007586 1.6e-17 92.4 61 75.4
Glyma.10G162900 Glycine max HOM05D001069 ORTHO05D007586 2.1e-17 92.0 61 73.8
Rhsim07G0074100 Rhododendron simsii HOM05D001069 ORTHO05D007586 2.1e-17 92.0 61 77.0
vmacro13808 Vaccinium macrocarpon HOM05D001069 ORTHO05D007586 2.1e-17 92.0 61 78.7
arahy.Tifrunner.gnm1.ann1.AYUH3A Arachis hypogaea HOM05D001069 ORTHO05D007586 2.8e-17 91.7 61 77.0
arahy.Tifrunner.gnm1.ann1.SY74BB Arachis hypogaea HOM05D001069 ORTHO05D007586 2.8e-17 91.7 61 77.0
BcaNung06267 Brassica carinata HOM05D001069 ORTHO05D007586 2.8e-17 91.7 61 73.8
AUR62004967 Chenopodium quinoa HOM05D001069 ORTHO05D007586 2.8e-17 91.7 61 75.4
FvH4_6g02700 Fragaria vesca HOM05D001069 ORTHO05D007586 2.8e-17 91.7 61 77.0
FAN14G5212 Fragaria x ananassa HOM05D001069 ORTHO05D007586 2.8e-17 91.7 61 77.0
MD04G1225700 Malus domestica HOM05D001069 ORTHO05D007586 2.8e-17 91.7 61 77.0
Nitab4.5_0008996g0040 Nicotiana tabacum HOM05D001069 ORTHO05D007586 2.8e-17 91.7 61 75.4
Peaxi162Scf00282g00417 Petunia axillaris HOM05D001069 ORTHO05D007586 2.8e-17 91.7 61 75.4
RcHm_v2.0_Chr3g0450701 Rosa chinensis HOM05D001069 ORTHO05D007586 2.8e-17 91.7 61 77.0
THA.LOC104823751 Tarenaya hassleriana HOM05D001069 ORTHO05D007586 2.8e-17 91.7 61 77.0
AUR62000994 Chenopodium quinoa HOM05D001069 ORTHO05D007586 3.6e-17 91.3 61 73.8
Medtr1g080770 Medicago truncatula HOM05D001069 ORTHO05D007586 4.8e-17 90.9 61 75.4
Oeu002656.1 Olea europaea HOM05D001069 ORTHO05D007586 4.8e-17 90.9 61 72.1
Psat6g145040 Pisum sativum HOM05D001069 ORTHO05D007586 4.8e-17 90.9 61 75.4
QL03p027238 Quercus lobata HOM05D001069 ORTHO05D007586 4.8e-17 90.9 61 78.7
SGA_v2.0_scaffold24G10675 Striga asiatica HOM05D004194 ORTHO05D005641 4.8e-17 90.9 61 73.8
Atru.chr2.835 Acer truncatum HOM05D001069 ORTHO05D007586 6.2e-17 90.5 61 73.8
A08p34980 Brassica napus HOM05D001069 ORTHO05D007586 6.2e-17 90.5 61 73.8
BraA08t35409Z Brassica rapa HOM05D001069 ORTHO05D007586 6.2e-17 90.5 61 73.8
CAN.G134.94 Capsicum annuum HOM05D001069 ORTHO05D007586 6.2e-17 90.5 61 75.4
Potri.013G042100 Populus trichocarpa HOM05D001069 ORTHO05D007586 6.2e-17 90.5 61 75.4
Sc09g0003960 Simmondsia chinensis HOM05D001069 ORTHO05D007586 6.2e-17 90.5 61 73.8
CANSAT54G2612 Cannabis sativa HOM05D001069 ORTHO05D007586 8.1e-17 90.1 61 72.1
Ca_10042_v3 Cicer arietinum L. HOM05D001069 ORTHO05D007586 8.1e-17 90.1 61 75.4
Thhalv10009095m.g Eutrema salsugineum HOM05D001069 ORTHO05D007586 8.1e-17 90.1 61 73.8
FAN02G3324 Fragaria x ananassa HOM05D001069 ORTHO05D007586 1.1e-16 89.7 61 73.8
FAN05G3732 Fragaria x ananassa HOM05D001069 ORTHO05D007586 1.1e-16 89.7 61 73.8
FAN14G1639 Fragaria x ananassa HOM05D001069 ORTHO05D007586 1.1e-16 89.7 61 75.4
FAN14G4385 Fragaria x ananassa HOM05D001069 ORTHO05D007586 1.1e-16 89.7 61 75.4
TPR.G12907 Trifolium pratense HOM05D001069 ORTHO05D007586 1.1e-16 89.7 61 73.8
Hund22103 Selenicereus undatus HOM05D001069 ORTHO05D007586 1.4e-16 89.4 61 72.1
ClCG02G016730 Citrullus lanatus HOM05D001069 ORTHO05D007586 1.8e-16 89.0 61 75.4
Dinv20292 Davidia involucrata HOM05D001069 ORTHO05D007586 1.8e-16 89.0 61 77.0
Ciclev10029576m.g Citrus clementina HOM05D001069 ORTHO05D007586 2.4e-16 88.6 61 73.8
CARHR008700 Cardamine hirsuta HOM05D001069 ORTHO05D007586 3.1e-16 88.2 61 73.8
Migut.B01094 Erythranthe guttata HOM05D001069 ORTHO05D007586 3.1e-16 88.2 61 70.5
Lsat_1_v5_gn_5_68360 Lactuca sativa HOM05D001069 ORTHO05D007586 3.1e-16 88.2 61 73.8
Nn3g19512 Nelumbo nucifera HOM05D001069 ORTHO05D007586 3.1e-16 88.2 61 73.8
DCAR_006651 Daucus carota HOM05D001069 ORTHO05D007586 4.0e-16 87.8 61 73.8
ECA233G1896 Erigeron canadensis HOM05D000316 ORTHO05D000374 4.0e-16 87.8 61 72.1
Carub.0001s0812 Capsella rubella HOM05D001069 ORTHO05D007586 5.3e-16 87.4 61 70.5
THA.LOC104805822 Tarenaya hassleriana HOM05D001069 ORTHO05D007586 5.3e-16 87.4 61 73.8
Os03g0628900 Oryza sativa ssp. japonica HOM05D001069 ORTHO05D007586 9.0e-16 86.7 61 68.9
BcaB07g34137 Brassica carinata HOM05D001069 ORTHO05D007586 1.2e-15 86.3 61 70.5
BcaC07g38446 Brassica carinata HOM05D001069 ORTHO05D007586 1.2e-15 86.3 61 70.5
C08p12160 Brassica napus HOM05D001069 ORTHO05D007586 1.2e-15 86.3 61 70.5
BolC8t48854H Brassica oleracea HOM05D001069 ORTHO05D007586 1.2e-15 86.3 61 70.5
C05p06850 Brassica napus HOM05D001069 ORTHO05D007586 1.5e-15 85.9 61 68.9
BolC5t29444H Brassica oleracea HOM05D001069 ORTHO05D007586 1.5e-15 85.9 61 68.9
Sp1g07420 Schrenkiella parvula HOM05D001069 ORTHO05D007586 1.5e-15 85.9 61 70.5
A06p05680 Brassica napus HOM05D001069 ORTHO05D007586 2.0e-15 85.5 61 70.5
BraA06t23778Z Brassica rapa HOM05D001069 ORTHO05D007586 2.6e-15 85.1 61 68.9
Aa31sc20G40 Aethionema arabicum HOM05D001069 ORTHO05D007586 3.4e-15 84.7 61 72.1
AL1G19210 Arabidopsis lyrata HOM05D001069 ORTHO05D007586 3.4e-15 84.7 61 70.5
AT1G08780 Arabidopsis thaliana HOM05D001069 ORTHO05D007586 3.4e-15 84.7 61 68.9
unitig_52.g17389 Utricularia gibba HOM05D001069 ORTHO05D007586 4.5e-15 84.3 61 72.1
Cc02_g30720 Coffea canephora HOM05D001069 ORTHO05D007586 5.8e-15 84.0 61 68.9
MELO3C004390.2 Cucumis melo HOM05D001069 ORTHO05D007586 7.6e-15 83.6 61 67.2
EL10Ac4g09163 Beta vulgaris HOM05D001069 ORTHO05D007586 9.9e-15 83.2 61 70.5
PSO210G4375 Papaver somniferum HOM05D001069 ORTHO05D007586 9.9e-15 83.2 61 72.1
PSO832G3124 Papaver somniferum HOM05D001069 ORTHO05D007586 9.9e-15 83.2 61 72.1
Sed0025346 Sechium edule HOM05D001069 ORTHO05D007586 9.9e-15 83.2 61 68.9
CDE06G2591 Ceratophyllum demersum HOM05D001069 ORTHO05D007586 8.4e-14 80.1 61 65.6
HanXRQChr16g0514711 Helianthus annuus HOM05D001069 ORTHO05D007586 3.2e-13 78.2 61 65.6
ATR0665G433 Amborella trichopoda HOM05D001069 ORTHO05D007586 7.1e-13 77.0 61 67.2
Sed0020567 Sechium edule HOM05D001069 ORTHO05D007586 2.1e-12 75.5 61 62.3
SHI18420 Sapria himalayana HOM05D001069 ORTHO05D007586 3.0e-11 71.6 61 57.4
CsaV3_2G004010 Cucumis sativus L. HOM05D001069 ORTHO05D007586 1.1e-10 69.7 61 57.4
PGSC0003DMG401019457 Solanum tuberosum HOM05D001069 ORTHO05D007586 2.1e-09 65.5 61 57.4
HPP92_026288 Vanilla planifolia HOM05D001069 ORTHO05D007586 4.8e-09 64.3 61 54.1
arahy.Tifrunner.gnm1.ann1.VDJK8S Arachis hypogaea HOM05D001069 ORTHO05D007586 8.1e-09 63.5 50 64.0
Solyc01g097300.4 Solanum lycopersicum HOM05D001069 ORTHO05D007586 1.8e-08 62.4 61 55.7
Sopen01g040970 Solanum pennellii HOM05D001069 ORTHO05D007586 1.8e-08 62.4 61 55.7
CDE07G0518 Ceratophyllum demersum HOM05D001069 ORTHO05D007586 3.1e-08 61.6 61 55.7
CBR_g8595 Chara braunii HOM05D001069 ORTHO05D007586 6.9e-08 60.5 61 49.2
Zm00001eb051110 Zea mays HOM05D001069 ORTHO05D007586 4.5e-07 57.8 61 52.5
Zm00001eb218870 Zea mays HOM05D001069 ORTHO05D007586 2.2e-06 55.5 61 50.8
arahy.Tifrunner.gnm1.ann1.X5I3PL Arachis hypogaea HOM05D001069 ORTHO05D007586 3.8e-06 54.7 35 74.3
MBI04_g44868_MAGBIO Magnolia biondii HOM05D001069 ORTHO05D007586 4.9e-06 54.3 61 49.2
arahy.Tifrunner.gnm1.ann1.VQ2WN5 Arachis hypogaea HOM05D001069 ORTHO05D007586 6.4e-06 53.9 35 71.4
AagrBONN_evm.TU.Sc2ySwM_369.398 Anthoceros agrestis HOM05D001069 ORTHO05D007586 8.4e-06 53.5 35 68.6


User provided reference genes

Program Settings