Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR365G0762 Trochodendron aralioides HOM05D004009 ORTHO05D004617 2.2e-79 298.9 154 100.0
Cfa006638 Carpinus fangiana HOM05D004009 ORTHO05D004617 1.3e-42 176.8 98 93.9
MBI18_g06039_MAGBIO Magnolia biondii HOM05D004009 ORTHO05D004617 1.7e-42 176.4 98 91.8
Haze_04129 Corylus avellana HOM05D004009 ORTHO05D004617 2.2e-42 176.0 98 93.9
Thecc.05G314000 Theobroma cacao HOM05D004009 ORTHO05D004617 3.7e-42 175.3 98 93.9
Duzib128G0284 Durio zibethinus HOM05D004009 ORTHO05D004617 4.9e-42 174.9 98 94.9
Duzib106G1589 Durio zibethinus HOM05D004009 ORTHO05D004617 7.1e-41 171.0 98 91.8
Gohir.A08G208600 Gossypium hirsutum HOM05D004009 ORTHO05D004617 9.2e-41 170.6 98 91.8
Gohir.D08G225500 Gossypium hirsutum HOM05D004009 ORTHO05D004617 9.2e-41 170.6 98 91.8
Gorai.004G239500 Gossypium raimondii HOM05D004009 ORTHO05D004617 9.2e-41 170.6 98 91.8
Nn5g27800 Nelumbo nucifera HOM05D004009 ORTHO05D004617 9.2e-41 170.6 98 91.8
Ca_06468_v3 Cicer arietinum L. HOM05D004009 ORTHO05D004617 2.1e-40 169.5 98 88.8
PGR004G0595 Punica granatum HOM05D004009 ORTHO05D004617 2.7e-40 169.1 98 90.8
Cpa.g.sc327.8 Carica papaya HOM05D004009 ORTHO05D004617 4.6e-40 168.3 98 91.8
Nn3g21508 Nelumbo nucifera HOM05D004009 ORTHO05D004617 4.6e-40 168.3 98 89.8
Hma1.2p1_0472F.1_g159660 Hydrangea macrophylla HOM05D004009 ORTHO05D004617 6.0e-40 167.9 98 86.7
Eucgr.F00277 Eucalyptus grandis HOM05D004009 ORTHO05D004617 7.8e-40 167.5 98 90.8
Eucgr.F00508 Eucalyptus grandis HOM05D004009 ORTHO05D004617 7.8e-40 167.5 98 90.8
Phvul.008G286800 Phaseolus vulgaris HOM05D004009 ORTHO05D004617 7.8e-40 167.5 98 90.8
QL02p014701 Quercus lobata HOM05D004009 ORTHO05D004617 7.8e-40 167.5 98 87.8
Ciclev10029577m.g Citrus clementina HOM05D004009 ORTHO05D004617 1.0e-39 167.2 98 86.7
Glyma.02G307100 Glycine max HOM05D004009 ORTHO05D004617 1.0e-39 167.2 98 89.8
CiPaw.07G022500 Carya illinoinensis HOM05D004009 ORTHO05D004617 1.3e-39 166.8 98 87.8
AUR62000751 Chenopodium quinoa HOM05D004009 ORTHO05D004617 1.3e-39 166.8 98 88.8
AUR62005217 Chenopodium quinoa HOM05D004009 ORTHO05D004617 1.3e-39 166.8 98 88.8
MBI14_g17350_MAGBIO Magnolia biondii HOM05D004009 ORTHO05D004617 1.3e-39 166.8 98 86.7
GSVIVG01031184001 Vitis vinifera HOM05D004009 ORTHO05D004617 1.3e-39 166.8 98 86.7
Aqoxy2G02931 Aquilegia oxysepala HOM05D004009 ORTHO05D004617 1.7e-39 166.4 98 86.7
VMungo0647G1943 Vigna mungo HOM05D004009 ORTHO05D004617 1.7e-39 166.4 98 89.8
FvH4_1g25940 Fragaria vesca HOM05D004009 ORTHO05D004617 2.3e-39 166.0 98 88.8
FAN19G2016 Fragaria x ananassa HOM05D004009 ORTHO05D004617 2.3e-39 166.0 98 88.8
FAN26G3151 Fragaria x ananassa HOM05D004009 ORTHO05D004617 2.3e-39 166.0 98 88.8
RcHm_v2.0_Chr6g0270961 Rosa chinensis HOM05D004009 ORTHO05D004617 2.3e-39 166.0 98 88.8
Actinidia35549 Actinidia chinensis HOM05D004009 ORTHO05D004617 3.0e-39 165.6 98 89.8
Ca_11219_v3 Cicer arietinum L. HOM05D004009 ORTHO05D004617 3.0e-39 165.6 98 86.7
Lj2g0025881 Lotus japonicus HOM05D004009 ORTHO05D004617 5.1e-39 164.9 98 88.8
Hund07105 Selenicereus undatus HOM05D004009 ORTHO05D004617 6.6e-39 164.5 98 87.8
Manes.09G171300 Manihot esculenta HOM05D004009 ORTHO05D004617 8.6e-39 164.1 99 87.9
TPR.G4101 Trifolium pratense HOM05D004009 ORTHO05D004617 8.6e-39 164.1 98 87.8
Dinv40349 Davidia involucrata HOM05D004009 ORTHO05D004617 1.1e-38 163.7 98 86.7
Glyma.14G006000 Glycine max HOM05D004009 ORTHO05D004617 1.1e-38 163.7 98 88.8
MELO3C024644.2 Cucumis melo HOM05D004009 ORTHO05D004617 1.5e-38 163.3 98 86.7
Ah.06g189870 Amaranthus hybridus HOM05D004009 ORTHO05D004617 1.9e-38 162.9 98 86.7
Sed0024624 Sechium edule HOM05D004009 ORTHO05D004617 1.9e-38 162.9 98 85.7
Sc16g0008790 Simmondsia chinensis HOM05D004009 ORTHO05D004617 1.9e-38 162.9 98 86.7
TPR.G6029 Trifolium pratense HOM05D004009 ORTHO05D004617 1.9e-38 162.9 98 86.7
Atru.chr2.80 Acer truncatum HOM05D004009 ORTHO05D004617 2.5e-38 162.5 98 87.8
CiPaw.08G161200 Carya illinoinensis HOM05D004009 ORTHO05D004617 2.5e-38 162.5 98 84.7
Eucgr.F00290 Eucalyptus grandis HOM05D004009 ORTHO05D004617 2.5e-38 162.5 98 87.8
Medtr1g114200 Medicago truncatula HOM05D004009 ORTHO05D004617 2.5e-38 162.5 98 85.7
Actinidia26756 Actinidia chinensis HOM05D004009 ORTHO05D004617 3.3e-38 162.2 98 87.8
Eucgr.F00288 Eucalyptus grandis HOM05D004009 ORTHO05D004617 3.3e-38 162.2 99 87.9
FAN28G1886 Fragaria x ananassa HOM05D004009 ORTHO05D004617 3.3e-38 162.2 98 86.7
CSS0030878 Camellia sinensis var. sinensis HOM05D004009 ORTHO05D004617 4.3e-38 161.8 98 87.8
ClCG04G003110 Citrullus lanatus HOM05D004009 ORTHO05D004617 4.3e-38 161.8 98 86.7
PSO478G4766 Papaver somniferum HOM05D004009 ORTHO05D004617 4.3e-38 161.8 98 87.8
Prupe.2G141100 Prunus persica HOM05D004009 ORTHO05D004617 4.3e-38 161.8 94 90.4
QL03p019968 Quercus lobata HOM05D004009 ORTHO05D004617 4.3e-38 161.8 98 83.7
Aqoxy5G00760 Aquilegia oxysepala HOM05D004009 ORTHO05D004617 5.6e-38 161.4 98 86.7
arahy.Tifrunner.gnm1.ann1.Q786Q7 Arachis hypogaea HOM05D004009 ORTHO05D004617 5.6e-38 161.4 98 86.7
arahy.Tifrunner.gnm1.ann1.WBP6JB Arachis hypogaea HOM05D004009 ORTHO05D004617 5.6e-38 161.4 98 86.7
TWI56G0677 Tripterygium wilfordii HOM05D004009 ORTHO05D004617 5.6e-38 161.4 98 87.8
Lj3g0001996 Lotus japonicus HOM05D004009 ORTHO05D004617 7.3e-38 161.0 98 86.7
EL10Ac4g09902 Beta vulgaris HOM05D004009 ORTHO05D004617 9.5e-38 160.6 98 83.7
FAN10G0557 Fragaria x ananassa HOM05D004009 ORTHO05D004617 9.5e-38 160.6 98 85.7
Manes.08G116611 Manihot esculenta HOM05D004009 ORTHO05D004617 9.5e-38 160.6 99 84.8
ATR0796G339 Amborella trichopoda HOM05D004009 ORTHO05D004617 1.2e-37 160.2 98 83.7
PSO782G5716 Papaver somniferum HOM05D004009 ORTHO05D004617 1.2e-37 160.2 98 86.7
Psat6g233080 Pisum sativum HOM05D004009 ORTHO05D004617 1.2e-37 160.2 98 84.7
THA.LOC104821727 Tarenaya hassleriana HOM05D004009 ORTHO05D004617 1.2e-37 160.2 98 84.7
Potri.007G100900 Populus trichocarpa HOM05D004009 ORTHO05D004617 1.6e-37 159.8 98 84.7
CDE01G0501 Ceratophyllum demersum HOM05D004009 ORTHO05D004617 2.1e-37 159.5 98 84.7
AUR62039989 Chenopodium quinoa HOM05D004009 ORTHO05D004617 3.6e-37 158.7 98 85.7
CANSAT80G2371 Cannabis sativa HOM05D004009 ORTHO05D004617 4.7e-37 158.3 98 83.7
Lalb_Chr18g0045811 Lupinus albus HOM05D004009 ORTHO05D004617 4.7e-37 158.3 98 84.7
AL6G39120 Arabidopsis lyrata HOM05D004009 ORTHO05D004617 6.2e-37 157.9 98 82.7
vmacro19695 Vaccinium macrocarpon HOM05D004009 ORTHO05D004617 6.2e-37 157.9 123 74.0
MSTRG.6369 Avicennia marina HOM05D004009 ORTHO05D004617 8.1e-37 157.5 102 82.4
Sp1g06410 Schrenkiella parvula HOM05D004009 ORTHO05D004617 8.1e-37 157.5 98 81.6
Cc02_g34270 Coffea canephora HOM05D004009 ORTHO05D004617 1.8e-36 156.4 102 84.3
CsaV3_4G029790 Cucumis sativus L. HOM05D004009 ORTHO05D004617 1.8e-36 156.4 98 82.7
Sp2g20940 Schrenkiella parvula HOM05D004009 ORTHO05D004617 1.8e-36 156.4 98 81.6
Carub.0006s2476 Capsella rubella HOM05D004009 ORTHO05D004617 2.3e-36 156.0 98 79.6
Thhalv10005162m.g Eutrema salsugineum HOM05D004009 ORTHO05D004617 2.3e-36 156.0 98 81.6
AT5G27820 Arabidopsis thaliana HOM05D004009 ORTHO05D004617 3.1e-36 155.6 98 80.6
BcaB04g19687 Brassica carinata HOM05D004009 ORTHO05D004617 3.1e-36 155.6 98 79.6
BcaNung04749 Brassica carinata HOM05D004009 ORTHO05D004617 3.1e-36 155.6 98 80.6
Zm00001eb053740 Zea mays HOM05D004009 ORTHO05D004617 3.1e-36 155.6 98 82.7
Aa31LG11G9540 Aethionema arabicum HOM05D004009 ORTHO05D004617 5.2e-36 154.8 98 81.6
BraA02t08853Z Brassica rapa HOM05D004009 ORTHO05D004617 5.2e-36 154.8 98 80.6
Lalb_Chr04g0247211 Lupinus albus HOM05D004009 ORTHO05D004617 6.8e-36 154.5 98 83.7
CARHR186300 Cardamine hirsuta HOM05D004009 ORTHO05D004617 8.9e-36 154.1 97 80.4
DCAR_029387 Daucus carota HOM05D004009 ORTHO05D004617 8.9e-36 154.1 98 79.6
EL10Ac5g12451 Beta vulgaris HOM05D004009 ORTHO05D004617 1.2e-35 153.7 96 84.4
A06p37330 Brassica napus HOM05D004009 ORTHO05D004617 1.2e-35 153.7 98 79.6
C02p58320 Brassica napus HOM05D004009 ORTHO05D004617 1.2e-35 153.7 98 80.6
C07p41140 Brassica napus HOM05D004009 ORTHO05D004617 1.2e-35 153.7 98 79.6
BolC7t44642H Brassica oleracea HOM05D004009 ORTHO05D004617 1.2e-35 153.7 98 79.6
BraA06t26655Z Brassica rapa HOM05D004009 ORTHO05D004617 1.2e-35 153.7 98 79.6
SGA_v2.0_scaffold105G30284 Striga asiatica HOM05D004009 ORTHO05D004617 1.2e-35 153.7 102 79.4
SGA_v2.0_scaffold3G01716 Striga asiatica HOM05D004009 ORTHO05D004617 1.2e-35 153.7 102 79.4
Zm00001eb088470 Zea mays HOM05D004009 ORTHO05D004617 1.2e-35 153.7 98 78.6
Prupe.6G319700 Prunus persica HOM05D004009 ORTHO05D004617 1.5e-35 153.3 94 86.2
A02p38770 Brassica napus HOM05D004009 ORTHO05D004617 2.0e-35 152.9 98 79.6
SGA_v2.0_scaffold6G03272 Striga asiatica HOM05D004009 ORTHO05D004617 2.0e-35 152.9 102 77.5
BcaB07g34204 Brassica carinata HOM05D004009 ORTHO05D004617 2.6e-35 152.5 98 78.6
ClCG11G000240 Citrullus lanatus HOM05D004009 ORTHO05D004617 2.6e-35 152.5 98 83.7
Thhalv10000673m.g Eutrema salsugineum HOM05D004009 ORTHO05D004617 2.6e-35 152.5 100 79.0
Eucgr.K01592 Eucalyptus grandis HOM05D004009 ORTHO05D004617 3.4e-35 152.1 98 81.6
Oeu053408.1 Olea europaea HOM05D004009 ORTHO05D004617 3.4e-35 152.1 102 80.4
Rhsim05G0137900 Rhododendron simsii HOM05D004009 ORTHO05D004617 3.4e-35 152.1 98 82.7
BolC2t11896H Brassica oleracea HOM05D004009 ORTHO05D004617 4.4e-35 151.8 98 78.6
Os03g0694800 Oryza sativa ssp. japonica HOM05D004009 ORTHO05D004617 7.6e-35 151.0 98 80.6
THA.LOC104818726 Tarenaya hassleriana HOM05D004009 ORTHO05D004617 7.6e-35 151.0 98 80.6
PGR119G0770 Punica granatum HOM05D004009 ORTHO05D004617 1.3e-34 150.2 98 83.7
unitig_744.g24181 Utricularia gibba HOM05D004009 ORTHO05D004617 1.7e-34 149.8 102 78.4
HPP92_021911 Vanilla planifolia HOM05D004009 ORTHO05D004617 1.7e-34 149.8 98 77.6
BcaC03g17808 Brassica carinata HOM05D004009 ORTHO05D004617 2.9e-34 149.1 98 78.6
Os01g0256600 Oryza sativa ssp. japonica HOM05D004009 ORTHO05D004617 2.9e-34 149.1 98 77.6
Sopen07g023940 Solanum pennellii HOM05D004009 ORTHO05D004617 1.1e-33 147.1 102 74.5
unitig_21.g20690 Utricularia gibba HOM05D004009 ORTHO05D004617 1.1e-33 147.1 102 77.5
CAN.G177.17 Capsicum annuum HOM05D004009 ORTHO05D004617 1.4e-33 146.7 102 74.5
PGSC0003DMG400017402 Solanum tuberosum HOM05D004009 ORTHO05D004617 1.4e-33 146.7 102 73.5
Nitab4.5_0004323g0030 Nicotiana tabacum HOM05D004009 ORTHO05D004617 2.4e-33 146.0 102 74.5
Nitab4.5_0004010g0040 Nicotiana tabacum HOM05D004009 ORTHO05D004617 3.2e-33 145.6 102 72.5
Migut.J01649 Erythranthe guttata HOM05D004009 ORTHO05D004617 1.2e-32 143.7 101 77.2
Nitab4.5_0000726g0020 Nicotiana tabacum HOM05D004009 ORTHO05D004617 1.6e-32 143.3 102 72.5
ECA236G1235 Erigeron canadensis HOM05D004009 ORTHO05D004617 2.7e-32 142.5 102 73.5
SalBow6G1513 Salvia bowleyana HOM05D004009 ORTHO05D004617 6.0e-32 141.4 102 70.6
Peaxi162Scf00131g00006 Petunia axillaris HOM05D004009 ORTHO05D004617 1.0e-31 140.6 102 72.5
Peaxi162Scf00154g00518 Petunia axillaris HOM05D004009 ORTHO05D004617 1.0e-31 140.6 102 70.6
SEGI_15227 Sequoiadendron giganteum HOM05D004009 ORTHO05D004617 1.0e-31 140.6 98 75.5
Eucgr.F00518 Eucalyptus grandis HOM05D004009 ORTHO05D004617 1.3e-31 140.2 98 78.6
HanXRQChr11g0320811 Helianthus annuus HOM05D004009 ORTHO05D004617 1.3e-31 140.2 102 73.5
Eucgr.F00526 Eucalyptus grandis HOM05D004009 ORTHO05D004617 2.3e-31 139.4 92 82.6
Eucgr.F00513 Eucalyptus grandis HOM05D004009 ORTHO05D004617 5.1e-31 138.3 98 76.5
Eucgr.F00510 Eucalyptus grandis HOM05D004009 ORTHO05D004617 1.2e-29 133.7 98 75.5
HanXRQChr03g0090821 Helianthus annuus HOM05D004009 ORTHO05D004617 1.2e-29 133.7 103 70.9
Nitab4.5_0010629g0040 Nicotiana tabacum HOM05D004009 ORTHO05D004617 1.2e-29 133.7 96 71.9
Rhsim07G0190600 Rhododendron simsii HOM05D004009 ORTHO05D004617 8.1e-29 131.0 76 88.2
Dinv30825 Davidia involucrata HOM05D002144 ORTHO05D004617 2.4e-28 129.4 76 88.2
Ciclev10033184m.g Citrus clementina HOM05D004009 ORTHO05D004617 4.0e-28 128.6 76 85.5
MD04G1198900 Malus domestica HOM05D004009 ORTHO05D004617 4.0e-28 128.6 76 89.5
MD12G1212100 Malus domestica HOM05D004009 ORTHO05D004617 4.0e-28 128.6 76 89.5
COL.COLO4_00089 Corchorus olitorius HOM05D004009 ORTHO05D004617 1.2e-27 127.1 76 88.2
BcaC04g23644 Brassica carinata HOM05D004009 ORTHO05D004617 1.5e-27 126.7 98 68.4
LjContig00081g0003615 Lotus japonicus HOM05D003043 ORTHO05D004617 1.5e-27 126.7 76 88.2
Eucgr.F00521 Eucalyptus grandis HOM05D004009 ORTHO05D004617 4.4e-27 125.2 98 72.4
Eucgr.F00523 Eucalyptus grandis HOM05D004009 ORTHO05D004617 9.9e-27 124.0 98 71.4
Eucgr.F00280 Eucalyptus grandis HOM05D004009 ORTHO05D004617 6.4e-26 121.3 98 69.4
FAN09G2085 Fragaria x ananassa HOM05D004009 ORTHO05D004617 1.1e-25 120.6 83 75.9
A09p05450 Brassica napus HOM05D004840 ORTHO05D005751 1.4e-25 120.2 76 80.3
BraA09t36183Z Brassica rapa HOM05D004840 ORTHO05D005751 1.4e-25 120.2 76 80.3
Mapoly0031s0031 Marchantia polymorpha HOM05D004009 ORTHO05D004617 2.3e-23 112.8 89 65.2
SHI18095 Sapria himalayana HOM05D004009 ORTHO05D004617 3.9e-23 112.1 76 76.3
Solyc07g045390.3 Solanum lycopersicum HOM05D004009 ORTHO05D004617 3.9e-23 112.1 80 73.8
FAN02G3567 Fragaria x ananassa HOM05D004009 ORTHO05D004617 1.1e-22 110.5 79 73.4
HanXRQChr11g0339871 Helianthus annuus HOM05D004009 ORTHO05D004617 1.1e-22 110.5 80 73.8
FAN03G2789 Fragaria x ananassa HOM05D004009 ORTHO05D004617 2.1e-21 106.3 65 87.7
FAN23G0674 Fragaria x ananassa HOM05D004009 ORTHO05D004617 2.1e-21 106.3 66 86.4
Lsat_1_v5_gn_5_65061 Lactuca sativa HOM05D004009 ORTHO05D004617 3.4e-19 99.0 73 75.3
Pp3c1_22820 Physcomitrium patens HOM05D004009 ORTHO05D004617 5.8e-19 98.2 88 54.5
AagrBONN_evm.TU.Sc2ySwM_368.1872 Anthoceros agrestis HOM05D004009 ORTHO05D004617 7.6e-19 97.8 93 55.9
Lsat_1_v5_gn_7_71720 Lactuca sativa HOM05D004009 ORTHO05D004617 1.3e-18 97.1 87 66.7
Potri.005G068300 Populus trichocarpa HOM05D004009 ORTHO05D004617 2.1e-16 89.7 58 79.3
C09p05910 Brassica napus HOM05D004840 ORTHO05D005751 6.6e-15 84.7 92 53.3
BolC9t53517H Brassica oleracea HOM05D004840 ORTHO05D005751 6.6e-15 84.7 92 53.3
HanXRQChr08g0232101 Helianthus annuus HOM05D004009 ORTHO05D004617 5.6e-14 81.6 61 70.5
MBI14_g39769_MAGBIO Magnolia biondii HOM05D004009 ORTHO05D004617 2.8e-13 79.3 42 88.1
CAN.G504.96 Capsicum annuum HOM05D004009 ORTHO05D004617 1.4e-12 77.0 80 58.8
CSS0025576 Camellia sinensis var. sinensis HOM05D004009 ORTHO05D004617 5.3e-12 75.1 98 50.0
COL.COLO4_10533 Corchorus olitorius HOM05D004009 ORTHO05D004617 1.2e-11 73.9 42 88.1
Medtr5g023360 Medicago truncatula HOM05D004009 ORTHO05D004617 1.2e-08 63.9 48 72.9
FAN01G0626 Fragaria x ananassa HOM05D004009 ORTHO05D004617 7.9e-08 61.2 34 82.4
Mapoly0056s0039 Marchantia polymorpha HOM05D001606 ORTHO05D002266 7.9e-08 61.2 85 37.6
SMO341G0023 Selaginella moellendorffii HOM05D004009 ORTHO05D004617 7.9e-08 61.2 86 38.4
CBR_g12617 Chara braunii HOM05D001606 ORTHO05D002266 2.5e-06 56.2 88 34.1
GSVIVG01026787001 Vitis vinifera HOM05D001606 ORTHO05D002266 4.3e-06 55.5 84 32.1
TAR636G0807 Trochodendron aralioides HOM05D001606 ORTHO05D002266 5.6e-06 55.1 84 33.3
Carub.0003s2016 Capsella rubella HOM05D001606 ORTHO05D002266 7.4e-06 54.7 84 33.3
AagrBONN_evm.TU.Sc2ySwM_228.2920 Anthoceros agrestis HOM05D001606 ORTHO05D002266 9.6e-06 54.3 88 33.0
Sed0025058 Sechium edule HOM05D001606 ORTHO05D002266 9.6e-06 54.3 84 34.5


User provided reference genes

Program Settings