Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR365G0701 Trochodendron aralioides HOM05D004239 ORTHO05D005191 2.1e-211 738.8 389 100.0
TAR636G0428 Trochodendron aralioides HOM05D004239 ORTHO05D005191 5.2e-165 584.7 349 87.1
QL03p006503 Quercus lobata HOM05D004239 ORTHO05D005191 2.3e-152 542.7 348 79.3
Dinv23953 Davidia involucrata HOM05D004239 ORTHO05D005191 1.9e-151 539.7 355 78.3
Dinv40275 Davidia involucrata HOM05D004239 ORTHO05D005191 3.3e-151 538.9 348 79.9
Haze_04207 Corylus avellana HOM05D004239 ORTHO05D005191 1.2e-150 537.0 350 80.0
CiPaw.07G016500 Carya illinoinensis HOM05D004239 ORTHO05D005191 8.0e-150 534.3 348 80.2
Cfa006576 Carpinus fangiana HOM05D004239 ORTHO05D005191 4.0e-149 531.9 348 79.6
Oeu027738.1 Olea europaea HOM05D004239 ORTHO05D005191 1.3e-147 526.9 349 76.8
Prupe.6G327600 Prunus persica HOM05D004239 ORTHO05D005191 1.3e-147 526.9 348 77.6
MD12G1220700 Malus domestica HOM05D004239 ORTHO05D005191 1.7e-147 526.6 348 77.6
Cpa.g.sc48.35 Carica papaya HOM05D004239 ORTHO05D005191 8.3e-147 524.2 355 77.2
GSVIVG01000037001 Vitis vinifera HOM05D004239 ORTHO05D005191 1.1e-146 523.9 348 77.9
Aqoxy2G03302 Aquilegia oxysepala HOM05D004239 ORTHO05D005191 7.0e-146 521.2 350 76.3
Potri.005G035300 Populus trichocarpa HOM05D004239 ORTHO05D005191 7.0e-146 521.2 348 78.4
Nn4g26228 Nelumbo nucifera HOM05D004239 ORTHO05D005191 9.2e-146 520.8 351 76.1
Sc09g0003220 Simmondsia chinensis HOM05D004239 ORTHO05D005191 1.2e-145 520.4 361 75.3
PSO063G4628 Papaver somniferum HOM05D004239 ORTHO05D005191 1.6e-145 520.0 348 75.6
Peaxi162Scf00037g00226 Petunia axillaris HOM05D004239 ORTHO05D005191 1.6e-145 520.0 348 76.7
Cc00_g15600 Coffea canephora HOM05D004239 ORTHO05D005191 3.5e-145 518.8 348 76.1
Oeu038249.1 Olea europaea HOM05D004239 ORTHO05D005191 4.5e-145 518.5 348 76.4
SGA_v2.0_scaffold81G26082 Striga asiatica HOM05D004239 ORTHO05D005191 7.8e-145 517.7 348 75.9
Nn1g02198 Nelumbo nucifera HOM05D004239 ORTHO05D005191 2.9e-144 515.8 348 75.6
Nitab4.5_0005388g0060 Nicotiana tabacum HOM05D004239 ORTHO05D005191 1.1e-143 513.8 350 76.3
SalBow3G0110 Salvia bowleyana HOM05D004239 ORTHO05D005191 2.5e-143 512.7 350 75.1
MSTRG.5107 Avicennia marina HOM05D004239 ORTHO05D005191 4.3e-143 511.9 349 75.9
Ciclev10001383m.g Citrus clementina HOM05D004239 ORTHO05D005191 4.3e-143 511.9 348 75.0
Solyc01g098840.3 Solanum lycopersicum HOM05D004239 ORTHO05D005191 4.3e-143 511.9 348 75.9
RcHm_v2.0_Chr3g0454501 Rosa chinensis HOM05D004239 ORTHO05D005191 9.5e-143 510.8 355 73.5
Manes.08G122300 Manihot esculenta HOM05D004239 ORTHO05D005191 1.2e-142 510.4 348 75.3
Actinidia23624 Actinidia chinensis HOM05D004239 ORTHO05D005191 1.6e-142 510.0 348 76.1
MD04G1206900 Malus domestica HOM05D004239 ORTHO05D005191 1.6e-142 510.0 348 75.3
Sopen01g042380 Solanum pennellii HOM05D004239 ORTHO05D005191 1.6e-142 510.0 348 75.6
FvH4_6g05650 Fragaria vesca HOM05D004239 ORTHO05D005191 2.1e-142 509.6 348 73.9
CANSAT54G0620 Cannabis sativa HOM05D004239 ORTHO05D005191 2.8e-142 509.2 348 75.9
Eucgr.B01993 Eucalyptus grandis HOM05D004239 ORTHO05D005191 2.8e-142 509.2 348 76.1
PGSC0003DMG401028586 Solanum tuberosum HOM05D004239 ORTHO05D005191 3.6e-142 508.8 348 75.6
Migut.N01997 Erythranthe guttata HOM05D004239 ORTHO05D005191 4.7e-142 508.4 348 75.3
Potri.013G024000 Populus trichocarpa HOM05D004239 ORTHO05D005191 4.7e-142 508.4 348 76.7
Lj1g0017751 Lotus japonicus HOM05D004239 ORTHO05D005191 8.0e-142 507.7 352 74.4
Peaxi162Scf00471g00018 Petunia axillaris HOM05D004239 ORTHO05D005191 8.0e-142 507.7 352 74.4
Hund21687 Selenicereus undatus HOM05D004239 ORTHO05D005191 4.0e-141 505.4 355 74.1
Manes.09G165700 Manihot esculenta HOM05D004239 ORTHO05D005191 6.8e-141 504.6 349 75.1
EL10Ac4g09340 Beta vulgaris HOM05D004239 ORTHO05D005191 2.6e-140 502.7 354 74.0
Nitab4.5_0009323g0010 Nicotiana tabacum HOM05D004239 ORTHO05D005191 2.6e-140 502.7 348 74.4
Lj9A25G19 Lonicera japonica HOM05D004239 ORTHO05D005191 3.4e-140 502.3 352 73.9
Lj9A26G17 Lonicera japonica HOM05D004239 ORTHO05D005191 3.4e-140 502.3 352 73.9
Glyma.03G239000 Glycine max HOM05D004239 ORTHO05D005191 9.8e-140 500.7 348 74.1
TPR.G33198 Trifolium pratense HOM05D004239 ORTHO05D005191 9.8e-140 500.7 352 75.3
CAN.G1077.21 Capsicum annuum HOM05D004239 ORTHO05D005191 1.3e-139 500.4 348 74.7
unitig_0.g2376 Utricularia gibba HOM05D004239 ORTHO05D005191 6.4e-139 498.0 348 74.4
Ca_09364_v3 Cicer arietinum L. HOM05D004239 ORTHO05D005191 8.3e-139 497.7 348 74.1
Sabra13G0025600 Salix brachista HOM05D004239 ORTHO05D005191 8.3e-139 497.7 366 72.1
Phvul.006G092900 Phaseolus vulgaris HOM05D004239 ORTHO05D005191 2.4e-138 496.1 348 74.7
Lalb_Chr04g0260811 Lupinus albus HOM05D004239 ORTHO05D005191 5.4e-138 495.0 348 74.1
vmacro23128 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 1.2e-137 493.8 348 72.4
Medtr7g113660 Medicago truncatula HOM05D004239 ORTHO05D005191 2.0e-137 493.0 348 73.3
Psat3g010600 Pisum sativum HOM05D004239 ORTHO05D005191 3.5e-137 492.3 348 73.9
AUR62000841 Chenopodium quinoa HOM05D004239 ORTHO05D005191 1.3e-136 490.3 351 72.4
FAN14G2823 Fragaria x ananassa HOM05D004239 ORTHO05D005191 6.6e-136 488.0 338 72.8
AUR62005132 Chenopodium quinoa HOM05D004239 ORTHO05D005191 8.6e-136 487.6 355 73.0
FAN05G5256 Fragaria x ananassa HOM05D004239 ORTHO05D005191 1.5e-135 486.9 338 73.4
Rhsim05G0142700 Rhododendron simsii HOM05D004239 ORTHO05D005191 5.6e-135 485.0 349 72.5
Lsat_1_v5_gn_4_139401 Lactuca sativa HOM05D004239 ORTHO05D005191 2.1e-134 483.0 349 71.3
TWI12G0310 Tripterygium wilfordii HOM05D004239 ORTHO05D005191 2.1e-134 483.0 351 71.2
VMungo0540G1286 Vigna mungo HOM05D004239 ORTHO05D005191 2.1e-134 483.0 348 73.0
ClCG02G015900 Citrullus lanatus HOM05D004239 ORTHO05D005191 6.2e-134 481.5 348 72.4
vmacro19629 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 6.2e-134 481.5 356 71.3
TWI36G1635 Tripterygium wilfordii HOM05D004239 ORTHO05D005191 2.0e-132 476.5 350 71.1
FAN02G3565 Fragaria x ananassa HOM05D004239 ORTHO05D005191 3.4e-132 475.7 370 67.6
Sed0006954 Sechium edule HOM05D004239 ORTHO05D005191 7.5e-132 474.6 348 70.7
CSS0041428 Camellia sinensis var. sinensis HOM05D004239 ORTHO05D005191 2.2e-131 473.0 348 73.0
FAN14G1612 Fragaria x ananassa HOM05D004239 ORTHO05D005191 2.2e-131 473.0 370 66.8
Sed0007278 Sechium edule HOM05D004239 ORTHO05D005191 2.2e-131 473.0 349 70.8
Gohir.A11G295900 Gossypium hirsutum HOM05D004239 ORTHO05D005191 8.3e-131 471.1 351 70.7
Gorai.007G342800 Gossypium raimondii HOM05D004239 ORTHO05D005191 1.9e-130 469.9 351 70.1
arahy.Tifrunner.gnm1.ann1.5NK7V3 Arachis hypogaea HOM05D004239 ORTHO05D005191 2.4e-130 469.5 380 67.4
FAN05G0638 Fragaria x ananassa HOM05D004239 ORTHO05D005191 2.4e-130 469.5 370 67.0
CsaV3_2G005140 Cucumis sativus L. HOM05D004239 ORTHO05D005191 3.2e-130 469.2 348 70.1
ECA234G2741 Erigeron canadensis HOM05D004239 ORTHO05D005191 4.1e-130 468.8 352 69.3
FAN09G3705 Fragaria x ananassa HOM05D004239 ORTHO05D005191 4.1e-130 468.8 370 67.0
Gohir.D11G311000 Gossypium hirsutum HOM05D004239 ORTHO05D005191 7.1e-130 468.0 351 69.8
Duzib106G0174 Durio zibethinus HOM05D004239 ORTHO05D005191 9.2e-130 467.6 351 68.4
MELO3C004278.2 Cucumis melo HOM05D004239 ORTHO05D005191 2.1e-129 466.5 348 69.8
arahy.Tifrunner.gnm1.ann1.VWT09S Arachis hypogaea HOM05D004239 ORTHO05D005191 2.7e-129 466.1 350 70.6
DCAR_029425 Daucus carota HOM05D004239 ORTHO05D005191 4.6e-129 465.3 350 69.7
THA.LOC104802807 Tarenaya hassleriana HOM05D004239 ORTHO05D005191 7.8e-129 464.5 353 68.8
PGR083G1755 Punica granatum HOM05D004239 ORTHO05D005191 8.6e-128 461.1 349 71.6
BcaB04g19671 Brassica carinata HOM05D004239 ORTHO05D005191 5.6e-127 458.4 355 68.5
HanXRQChr09g0259671 Helianthus annuus HOM05D004239 ORTHO05D005191 2.8e-126 456.1 349 68.8
BraA09t36167Z Brassica rapa HOM05D004239 ORTHO05D005191 8.1e-126 454.5 349 67.3
A09p05280 Brassica napus HOM05D004239 ORTHO05D005191 3.1e-125 452.6 350 67.4
ATR0561G047 Amborella trichopoda HOM05D004239 ORTHO05D005191 6.8e-125 451.4 349 67.6
Thecc.05G305000 Theobroma cacao HOM05D004239 ORTHO05D005191 1.5e-124 450.3 351 66.1
AL6G39560 Arabidopsis lyrata HOM05D004239 ORTHO05D005191 2.0e-124 449.9 349 67.6
Thhalv10004396m.g Eutrema salsugineum HOM05D004239 ORTHO05D005191 2.6e-124 449.5 353 67.7
Actinidia19795 Actinidia chinensis HOM05D004239 ORTHO05D005191 4.4e-124 448.7 312 74.7
AT5G27450 Arabidopsis thaliana HOM05D004239 ORTHO05D005191 4.4e-124 448.7 349 67.3
C09p05760 Brassica napus HOM05D004239 ORTHO05D005191 4.4e-124 448.7 350 68.3
Sp2g20670 Schrenkiella parvula HOM05D004239 ORTHO05D005191 2.2e-123 446.4 352 66.8
A02p38630 Brassica napus HOM05D004239 ORTHO05D005191 3.7e-123 445.7 352 66.8
Carub.0006s2508 Capsella rubella HOM05D004239 ORTHO05D005191 4.9e-123 445.3 349 67.0
C02p58120 Brassica napus HOM05D004239 ORTHO05D005191 1.1e-122 444.1 353 66.6
BraA02t08839Z Brassica rapa HOM05D004239 ORTHO05D005191 1.9e-122 443.4 352 66.5
BcaC04g23678 Brassica carinata HOM05D004239 ORTHO05D005191 2.4e-122 443.0 350 67.7
BolC9t53503H Brassica oleracea HOM05D004239 ORTHO05D005191 2.4e-122 443.0 350 67.7
BolC2t11880H Brassica oleracea HOM05D004239 ORTHO05D005191 5.4e-122 441.8 353 66.0
Aa31LG11G9210 Aethionema arabicum HOM05D004239 ORTHO05D005191 4.6e-121 438.7 350 66.0
CARHR186060 Cardamine hirsuta HOM05D004239 ORTHO05D005191 6.0e-121 438.3 350 66.6
Lsat_1_v5_gn_2_64361 Lactuca sativa HOM05D004239 ORTHO05D005191 5.8e-116 421.8 354 63.8
Glyma.19G236200 Glycine max HOM05D004239 ORTHO05D005191 7.1e-114 414.8 296 71.6
ClCG10G005450 Citrullus lanatus HOM05D004239 ORTHO05D005191 4.3e-111 405.6 349 64.2
Zm00001eb209470 Zea mays HOM05D004239 ORTHO05D005191 4.3e-111 405.6 355 61.1
Zm00001eb209270 Zea mays HOM05D004239 ORTHO05D005191 2.1e-110 403.3 355 60.6
BcaC03g17788 Brassica carinata HOM05D004239 ORTHO05D005191 1.1e-109 401.0 353 62.6
Sed0017775 Sechium edule HOM05D004239 ORTHO05D005191 1.4e-109 400.6 370 59.7
Os10g0329300 Oryza sativa ssp. japonica HOM05D004239 ORTHO05D005191 1.2e-108 397.5 376 58.2
Gorai.007G296000 Gossypium raimondii HOM05D004239 ORTHO05D005191 1.7e-107 393.7 340 63.8
SEGI_00819 Sequoiadendron giganteum HOM05D004239 ORTHO05D005191 4.2e-106 389.0 354 59.0
Nitab4.5_0002031g0070 Nicotiana tabacum HOM05D004239 ORTHO05D005191 1.0e-104 384.4 350 61.4
Gohir.D11G274300 Gossypium hirsutum HOM05D004239 ORTHO05D005191 6.9e-101 371.7 340 61.5
SHI18197 Sapria himalayana HOM05D004239 ORTHO05D005191 1.7e-99 367.1 361 54.8
MELO3C004281.2 Cucumis melo HOM05D004239 ORTHO05D005191 1.1e-95 354.4 272 66.9
CDE02G3721 Ceratophyllum demersum HOM05D004239 ORTHO05D005191 4.2e-90 335.9 259 64.9
AagrBONN_evm.TU.Sc2ySwM_368.2263 Anthoceros agrestis HOM05D004239 ORTHO05D005191 7.4e-87 325.1 398 46.7
Actinidia05711 Actinidia chinensis HOM05D004239 ORTHO05D005191 1.3e-86 324.3 250 68.4
Pp3c22_490 Physcomitrium patens HOM05D004239 ORTHO05D005191 1.2e-84 317.8 383 48.0
HPP92_020860 Vanilla planifolia HOM05D004239 ORTHO05D005191 2.6e-84 316.6 266 62.8
RcHm_v2.0_Chr7g0220931 Rosa chinensis HOM05D004239 ORTHO05D005191 1.7e-83 313.9 300 59.0
Mapoly0214s0007 Marchantia polymorpha HOM05D004239 ORTHO05D005191 1.9e-82 310.5 401 45.6
SMO347G0436 Selaginella moellendorffii HOM05D004239 ORTHO05D005191 1.0e-67 261.5 355 43.9
CBR_g3053 Chara braunii HOM05D004239 ORTHO05D005191 7.0e-53 212.2 432 36.6
Nitab4.5_0000327g0030 Nicotiana tabacum HOM05D004239 ORTHO05D005191 1.2e-49 201.4 143 74.1
SMO167G0025 Selaginella moellendorffii HOM05D004239 ORTHO05D005191 3.8e-43 179.9 210 48.1
vmacro05023 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 8.5e-43 178.7 183 57.4
CSS0049885 Camellia sinensis var. sinensis HOM05D004239 ORTHO05D005191 1.4e-40 171.4 135 66.7
Cfa007056 Carpinus fangiana HOM05D004239 ORTHO05D005191 3.4e-39 166.8 113 78.8
Cfa027123 Carpinus fangiana HOM05D004239 ORTHO05D005191 1.2e-31 141.7 368 32.3
Lj5A557G19 Lonicera japonica HOM05D004239 ORTHO05D005191 1.7e-30 137.9 150 56.7
Lj5A557T20 Lonicera japonica HOM05D004239 ORTHO05D005191 1.6e-28 131.3 155 52.9
Zm00001eb063950 Zea mays HOM05D004239 ORTHO05D005191 3.9e-27 126.7 177 44.6
Lj5A555G9 Lonicera japonica HOM05D004239 ORTHO05D005191 3.3e-26 123.6 138 55.8
Lj5A556G14 Lonicera japonica HOM05D004239 ORTHO05D005191 9.5e-26 122.1 120 59.2
RcHm_v2.0_Chr3g0454481 Rosa chinensis HOM05D004239 ORTHO05D005191 1.4e-24 118.2 86 70.9
AagrBONN_evm.TU.Sc2ySwM_117.3520 Anthoceros agrestis HOM05D004239 ORTHO05D005191 1.7e-22 111.3 144 44.4
Lj5A558T15 Lonicera japonica HOM05D004239 ORTHO05D005191 1.4e-21 108.2 86 65.1
COL.COLO4_16926 Corchorus olitorius HOM05D004239 ORTHO05D005191 2.7e-20 104.0 83 62.7
Lj5A549T14 Lonicera japonica HOM05D004239 ORTHO05D005191 8.6e-19 99.0 127 52.8
Lj5A558T16 Lonicera japonica HOM05D004239 ORTHO05D005191 8.6e-19 99.0 127 52.8
Lj5A552G14 Lonicera japonica HOM05D004239 ORTHO05D005191 3.3e-18 97.1 81 63.0
Lsat_1_v5_gn_7_76161 Lactuca sativa HOM05D004239 ORTHO05D005191 9.5e-18 95.5 99 52.5
Lj5A550T6 Lonicera japonica HOM05D004239 ORTHO05D005191 4.0e-16 90.1 126 49.2
Zm00001eb252600 Zea mays HOM05D004239 ORTHO05D005191 6.4e-14 82.8 104 48.1
Zm00001eb193770 Zea mays HOM05D004239 ORTHO05D445176 5.4e-13 79.7 87 49.4
RcHm_v2.0_Chr7g0220941 Rosa chinensis HOM05D004239 ORTHO05D005191 2.7e-12 77.4 48 81.2
CiPaw.07G016300 Carya illinoinensis HOM05D006625 ORTHO05D008060 1.0e-11 75.5 41 92.7
COL.COLO4_16925 Corchorus olitorius HOM05D004239 ORTHO05D005191 3.0e-11 73.9 51 66.7
Zm00001eb313220 Zea mays HOM05D004239 ORTHO05D005191 8.6e-11 72.4 83 50.6
Potri.015G125201 Populus trichocarpa HOM05D004239 ORTHO05D005191 1.5e-10 71.6 51 62.7
arahy.Tifrunner.gnm1.ann1.04YHM3 Arachis hypogaea HOM05D004239 ORTHO05D005191 7.3e-10 69.3 100 47.0
Actinidia05710 Actinidia chinensis HOM05D004239 ORTHO05D005191 9.5e-10 68.9 38 84.2
Oeu038248.1 Olea europaea HOM05D004239 ORTHO05D288322 9.5e-10 68.9 40 85.0
Zm00001eb342830 Zea mays HOM05D004239 ORTHO05D005191 1.5e-07 61.6 38 78.9
Zm00001eb019540 Zea mays HOM05D000931 ORTHO05D001924 3.4e-07 60.5 38 76.3
RcHm_v2.0_Chr3g0454471 Rosa chinensis HOM05D004239 ORTHO05D005191 4.4e-07 60.1 36 83.3


User provided reference genes

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