Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR365G0664 Trochodendron aralioides HOM05D004281 ORTHO05D004839 5.9e-121 437.6 224 100.0
Nn1g09410 Nelumbo nucifera HOM05D004281 ORTHO05D004839 3.3e-87 325.5 216 79.6
GSVIVG01038261001 Vitis vinifera HOM05D004281 ORTHO05D004839 2.4e-82 309.3 174 90.8
THA.LOC104804375 Tarenaya hassleriana HOM05D004281 ORTHO05D004839 7.0e-82 307.8 215 74.9
arahy.Tifrunner.gnm1.ann1.MYV34H Arachis hypogaea HOM05D004281 ORTHO05D004839 9.2e-82 307.4 233 71.2
Sp4g26130 Schrenkiella parvula HOM05D004281 ORTHO05D004839 3.5e-81 305.4 220 71.8
Dinv24743 Davidia involucrata HOM05D004281 ORTHO05D004839 7.8e-81 304.3 220 75.9
Carub.0004s2660 Capsella rubella HOM05D004281 ORTHO05D004839 1.0e-80 303.9 198 77.3
Thhalv10001807m.g Eutrema salsugineum HOM05D004281 ORTHO05D004839 1.0e-80 303.9 186 80.6
Ciclev10022149m.g Citrus clementina HOM05D004281 ORTHO05D004839 3.0e-80 302.4 211 75.4
COL.COLO4_27572 Corchorus olitorius HOM05D004281 ORTHO05D004839 3.9e-80 302.0 186 81.7
arahy.Tifrunner.gnm1.ann1.HHGT95 Arachis hypogaea HOM05D004281 ORTHO05D004839 8.6e-80 300.8 240 68.3
AT2G44050 Arabidopsis thaliana HOM05D004281 ORTHO05D004839 1.5e-79 300.1 198 75.8
Glyma.08G087500 Glycine max HOM05D004281 ORTHO05D004839 3.3e-79 298.9 194 80.9
THA.LOC104802349 Tarenaya hassleriana HOM05D004281 ORTHO05D004839 3.3e-79 298.9 209 73.7
Potri.017G001800 Populus trichocarpa HOM05D004281 ORTHO05D004839 5.6e-79 298.1 196 77.0
Atru.chr3.1980 Acer truncatum HOM05D004281 ORTHO05D004839 7.3e-79 297.7 214 73.8
CARHR139210 Cardamine hirsuta HOM05D004281 ORTHO05D004839 1.2e-78 297.0 197 75.1
Potri.007G146000 Populus trichocarpa HOM05D004281 ORTHO05D004839 1.2e-78 297.0 192 79.2
TWI15G0067 Tripterygium wilfordii HOM05D004281 ORTHO05D004839 1.2e-78 297.0 193 77.2
Aa31LG1G25720 Aethionema arabicum HOM05D004281 ORTHO05D004839 2.1e-78 296.2 198 74.7
Aqoxy7G00623 Aquilegia oxysepala HOM05D004281 ORTHO05D004839 2.8e-78 295.8 212 73.6
CiPaw.01G202700 Carya illinoinensis HOM05D004281 ORTHO05D004839 2.8e-78 295.8 234 68.8
Manes.02G102600 Manihot esculenta HOM05D004281 ORTHO05D004839 2.8e-78 295.8 222 70.7
AL4G42920 Arabidopsis lyrata HOM05D004281 ORTHO05D004839 3.6e-78 295.4 197 74.6
CDE09G0590 Ceratophyllum demersum HOM05D004281 ORTHO05D004839 3.6e-78 295.4 227 70.5
PSO732G0016 Papaver somniferum HOM05D004281 ORTHO05D004839 6.2e-78 294.7 194 77.3
PSO675G2617 Papaver somniferum HOM05D004281 ORTHO05D004839 8.0e-78 294.3 194 75.8
CSS0036502 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 1.0e-77 293.9 219 72.6
Gohir.A04G135700 Gossypium hirsutum HOM05D004281 ORTHO05D004839 1.0e-77 293.9 187 80.2
Gohir.D04G178800 Gossypium hirsutum HOM05D004281 ORTHO05D004839 1.0e-77 293.9 187 80.2
Gorai.012G171900 Gossypium raimondii HOM05D004281 ORTHO05D004839 1.0e-77 293.9 187 80.2
Eucgr.L01202 Eucalyptus grandis HOM05D004281 ORTHO05D004839 1.4e-77 293.5 202 74.3
Medtr4g094700 Medicago truncatula HOM05D004281 ORTHO05D004839 1.4e-77 293.5 210 72.4
A03p24650 Brassica napus HOM05D004281 ORTHO05D004839 3.1e-77 292.4 186 79.0
BraA03t11671Z Brassica rapa HOM05D004281 ORTHO05D004839 3.1e-77 292.4 186 79.0
Eucgr.F02801 Eucalyptus grandis HOM05D004281 ORTHO05D004839 4.0e-77 292.0 202 74.8
Lalb_Chr13g0292401 Lupinus albus HOM05D004281 ORTHO05D004839 4.0e-77 292.0 219 70.3
CSS0013668 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 5.2e-77 291.6 219 72.1
Gohir.D11G011300 Gossypium hirsutum HOM05D004281 ORTHO05D004839 5.2e-77 291.6 187 79.7
Gorai.007G012700 Gossypium raimondii HOM05D004281 ORTHO05D004839 5.2e-77 291.6 187 79.7
Psat5g058760 Pisum sativum HOM05D004281 ORTHO05D004839 5.2e-77 291.6 190 77.9
CANSAT78G2301 Cannabis sativa HOM05D004281 ORTHO05D004839 6.8e-77 291.2 215 73.5
Gohir.A11G012100 Gossypium hirsutum HOM05D004281 ORTHO05D004839 6.8e-77 291.2 187 79.7
BraA04t18776Z Brassica rapa HOM05D004281 ORTHO05D004839 8.9e-77 290.8 186 78.5
Psat7g088840 Pisum sativum HOM05D004281 ORTHO05D004839 8.9e-77 290.8 190 77.9
Atru.chr8.1217 Acer truncatum HOM05D004281 ORTHO05D004839 1.2e-76 290.4 194 77.3
BcaB01g03334 Brassica carinata HOM05D004281 ORTHO05D004839 1.2e-76 290.4 193 76.7
Phvul.002G189800 Phaseolus vulgaris HOM05D004281 ORTHO05D004839 1.5e-76 290.0 195 78.5
Aa31LG10G14140 Aethionema arabicum HOM05D004281 ORTHO05D004839 3.4e-76 288.9 193 75.1
Lalb_Chr12g0209091 Lupinus albus HOM05D004281 ORTHO05D004839 3.4e-76 288.9 235 68.5
Thecc.05G001000 Theobroma cacao HOM05D004281 ORTHO05D004839 3.4e-76 288.9 202 74.8
Lj4g0008259 Lotus japonicus HOM05D004281 ORTHO05D004839 4.4e-76 288.5 232 69.0
Actinidia18388 Actinidia chinensis HOM05D004281 ORTHO05D004839 7.5e-76 287.7 223 70.4
BcaB06g29353 Brassica carinata HOM05D004281 ORTHO05D004839 7.5e-76 287.7 195 75.4
BolC3t15286H Brassica oleracea HOM05D004281 ORTHO05D004839 7.5e-76 287.7 187 78.6
BolC4t28587H Brassica oleracea HOM05D004281 ORTHO05D004839 7.5e-76 287.7 222 68.9
Rhsim09G0002300 Rhododendron simsii HOM05D000705 ORTHO05D002970 7.5e-76 287.7 217 71.4
A04p33170 Brassica napus HOM05D004281 ORTHO05D004839 1.3e-75 287.0 218 69.7
MSTRG.24546 Avicennia marina HOM05D004281 ORTHO05D004839 2.2e-75 286.2 165 84.2
BcaC02g07139 Brassica carinata HOM05D004281 ORTHO05D004839 2.2e-75 286.2 222 68.5
vmacro00726 Vaccinium macrocarpon HOM05D004281 ORTHO05D004839 2.2e-75 286.2 163 87.7
PGR142G2669 Punica granatum HOM05D004281 ORTHO05D004839 2.9e-75 285.8 210 72.4
Prupe.7G270800 Prunus persica HOM05D004281 ORTHO05D004839 4.9e-75 285.0 212 72.2
FvH4_2g10600 Fragaria vesca HOM05D004281 ORTHO05D004839 7.0e-74 281.2 214 71.0
FAN24G2282 Fragaria x ananassa HOM05D004281 ORTHO05D004839 7.0e-74 281.2 214 71.0
MD15G1142400 Malus domestica HOM05D004281 ORTHO05D004839 2.0e-73 279.6 169 81.1
FAN15G1026 Fragaria x ananassa HOM05D004281 ORTHO05D004839 3.5e-73 278.9 218 69.7
C03p29390 Brassica napus HOM05D004281 ORTHO05D004839 1.0e-72 277.3 216 69.4
Migut.G00913 Erythranthe guttata HOM05D004281 ORTHO05D004839 1.0e-72 277.3 214 69.2
RcHm_v2.0_Chr2g0084411 Rosa chinensis HOM05D004281 ORTHO05D004839 1.3e-72 276.9 169 83.4
BcaB06g29512 Brassica carinata HOM05D004281 ORTHO05D004839 1.7e-72 276.6 161 82.6
SGA_v2.0_scaffold37G14906 Striga asiatica HOM05D004281 ORTHO05D004839 1.1e-71 273.9 242 63.2
VMungo0251G0005 Vigna mungo HOM05D004281 ORTHO05D004839 1.1e-71 273.9 189 77.8
QL10p065802 Quercus lobata HOM05D004281 ORTHO05D004839 1.9e-71 273.1 196 75.0
HPP92_005601 Vanilla planifolia HOM05D004281 ORTHO05D004839 1.9e-71 273.1 202 71.3
Cc00_g16880 Coffea canephora HOM05D004281 ORTHO05D004839 9.5e-71 270.8 203 72.4
PGR142G1214 Punica granatum HOM05D004281 ORTHO05D004839 9.5e-71 270.8 202 70.3
Sabra17G0005800 Salix brachista HOM05D004281 ORTHO05D004839 1.6e-70 270.0 205 69.8
ECA233G0955 Erigeron canadensis HOM05D004281 ORTHO05D004839 2.8e-70 269.2 231 64.5
FvH4_1g00110 Fragaria vesca HOM05D004281 ORTHO05D004839 3.6e-70 268.9 214 69.2
HanXRQChr13g0392191 Helianthus annuus HOM05D004281 ORTHO05D004839 1.1e-69 267.3 199 69.8
Solyc08g015660.3 Solanum lycopersicum HOM05D004281 ORTHO05D004839 1.1e-69 267.3 202 68.3
PGSC0003DMG400025217 Solanum tuberosum HOM05D004281 ORTHO05D004839 1.4e-69 266.9 207 66.2
BcaC01g05189 Brassica carinata HOM05D001249 ORTHO05D003440 4.0e-69 265.4 184 75.0
Ca_18245_v3 Cicer arietinum L. HOM05D004281 ORTHO05D004839 4.0e-69 265.4 175 77.7
Peaxi162Scf00459g00125 Petunia axillaris HOM05D004281 ORTHO05D004839 5.2e-69 265.0 186 71.0
C04p70870 Brassica napus HOM05D001249 ORTHO05D003440 8.9e-69 264.2 213 66.2
CAN.G607.11 Capsicum annuum HOM05D004281 ORTHO05D004839 8.9e-69 264.2 206 67.5
Cc05_g03580 Coffea canephora HOM05D004281 ORTHO05D004839 8.9e-69 264.2 169 79.9
Sopen08g005770 Solanum pennellii HOM05D004281 ORTHO05D004839 8.9e-69 264.2 199 68.8
HanXRQChr13g0392171 Helianthus annuus HOM05D004281 ORTHO05D004839 4.4e-68 261.9 197 70.6
Oeu014981.1 Olea europaea HOM05D004281 ORTHO05D004839 1.7e-67 260.0 145 88.3
AUR62023693 Chenopodium quinoa HOM05D004281 ORTHO05D004839 2.9e-67 259.2 205 65.4
Lsat_1_v5_gn_8_33320 Lactuca sativa HOM05D004281 ORTHO05D004839 2.9e-67 259.2 204 65.7
Nitab4.5_0000668g0110 Nicotiana tabacum HOM05D004281 ORTHO05D004839 2.9e-67 259.2 218 64.2
Sed0022244 Sechium edule HOM05D004281 ORTHO05D004839 4.9e-67 258.5 227 60.4
Zm00001eb068110 Zea mays HOM05D004281 ORTHO05D004839 4.9e-67 258.5 164 77.4
EL10Ac3g06178 Beta vulgaris HOM05D004281 ORTHO05D004839 8.3e-67 257.7 186 69.9
PGSC0003DMG400029273 Solanum tuberosum HOM05D004281 ORTHO05D004839 1.1e-66 257.3 214 64.5
Nitab4.5_0001110g0040 Nicotiana tabacum HOM05D004281 ORTHO05D004839 1.9e-66 256.5 218 64.2
DCAR_027490 Daucus carota HOM05D004281 ORTHO05D004839 5.4e-66 255.0 157 80.9
Os04g0497400 Oryza sativa ssp. japonica HOM05D004281 ORTHO05D004839 9.2e-66 254.2 156 80.8
EL10Ac4g08581 Beta vulgaris HOM05D004281 ORTHO05D004839 1.2e-65 253.8 189 68.8
Sed0015421 Sechium edule HOM05D004281 ORTHO05D004839 1.2e-65 253.8 207 63.3
TPR.G31246 Trifolium pratense HOM05D004281 ORTHO05D004839 1.2e-65 253.8 208 67.3
unitig_578.g16718 Utricularia gibba HOM05D000499 ORTHO05D007471 1.2e-65 253.8 172 70.9
CsaV3_6G032410 Cucumis sativus L. HOM05D004281 ORTHO05D004839 2.7e-65 252.7 165 73.9
CAN.G566.44 Capsicum annuum HOM05D004281 ORTHO05D004839 4.6e-65 251.9 212 63.7
Zm00001eb432360 Zea mays HOM05D004281 ORTHO05D004839 1.0e-64 250.8 202 64.9
Cpa.g.sc9.245 Carica papaya HOM05D004281 ORTHO05D004839 3.0e-64 249.2 204 68.6
AUR62002492 Chenopodium quinoa HOM05D004281 ORTHO05D004839 3.0e-64 249.2 221 61.1
Haze_11113 Corylus avellana HOM05D004281 ORTHO05D004839 3.9e-64 248.8 141 88.7
Solyc12g096590.3 Solanum lycopersicum HOM05D004281 ORTHO05D004839 3.9e-64 248.8 220 60.9
Sopen12g032420 Solanum pennellii HOM05D004281 ORTHO05D004839 5.1e-64 248.4 212 63.2
FAN26G2986 Fragaria x ananassa HOM05D000705 ORTHO05D004839 1.9e-63 246.5 209 67.5
Lsat_1_v5_gn_8_33340 Lactuca sativa HOM05D004281 ORTHO05D004839 5.6e-63 245.0 141 85.1
MELO3C011439.2 Cucumis melo HOM05D004281 ORTHO05D004839 8.9e-61 237.7 193 63.2
FAN28G0724 Fragaria x ananassa HOM05D006787 ORTHO05D008366 3.4e-60 235.7 239 59.4
Ah.13g073140 Amaranthus hybridus HOM05D000705 ORTHO05D004839 4.4e-60 235.3 204 62.3
Nitab4.5_0001091g0070 Nicotiana tabacum HOM05D004281 ORTHO05D004839 4.9e-59 231.9 212 60.8
QL10p064677 Quercus lobata HOM05D004281 ORTHO05D004839 8.4e-59 231.1 140 82.9
Pp3c27_2710 Physcomitrium patens HOM05D004281 ORTHO05D004839 1.1e-58 230.7 223 55.6
Pp3c16_5700 Physcomitrium patens HOM05D004281 ORTHO05D004839 2.4e-58 229.6 158 70.3
Mapoly0120s0006 Marchantia polymorpha HOM05D004281 ORTHO05D004839 3.2e-58 229.2 164 68.3
SMO198G0030 Selaginella moellendorffii HOM05D004281 ORTHO05D004839 5.4e-58 228.4 157 67.5
Lj4A426G8 Lonicera japonica HOM05D004281 ORTHO05D004839 1.2e-57 227.3 211 63.0
MBI07_g44299_MAGBIO Magnolia biondii HOM05D004281 ORTHO05D004839 2.7e-57 226.1 172 71.5
Cfa008529 Carpinus fangiana HOM05D006787 ORTHO05D008366 3.5e-57 225.7 133 86.5
ClCG08G010210 Citrullus lanatus HOM05D004281 ORTHO05D004839 1.0e-56 224.2 138 76.8
ATR0743G183 Amborella trichopoda HOM05D004281 ORTHO05D004839 5.1e-56 221.9 127 83.5
RcHm_v2.0_Chr7g0227511 Rosa chinensis HOM05D004281 ORTHO05D004839 1.8e-53 213.4 132 81.1
TPR.G18090 Trifolium pratense HOM05D004281 ORTHO05D004839 2.6e-52 209.5 158 70.3
BcaB01g03343 Brassica carinata HOM05D001249 ORTHO05D003440 6.4e-51 204.9 169 66.3
QL08p018116 Quercus lobata HOM05D004281 ORTHO05D004839 1.9e-50 203.4 144 76.4
Duzib212G0492 Durio zibethinus HOM05D004281 ORTHO05D004839 4.2e-50 202.2 141 73.8
Sc13g0007610 Simmondsia chinensis HOM05D004281 ORTHO05D004839 6.0e-49 198.4 177 65.0
Nitab4.5_0004802g0010 Nicotiana tabacum HOM05D004281 ORTHO05D004839 2.3e-48 196.4 167 61.1
Nitab4.5_0010298g0020 Nicotiana tabacum HOM05D004281 ORTHO05D004839 1.5e-47 193.7 215 53.0
CBR_g29269 Chara braunii HOM05D004281 ORTHO05D004839 2.1e-46 189.9 141 63.1
Cre02.g088850 Chlamydomonas reinhardtii HOM05D004281 ORTHO05D004839 1.8e-45 186.8 199 50.3
unitig_85.g27225 Utricularia gibba HOM05D004281 ORTHO05D004839 6.9e-45 184.9 106 84.9
Hund22685 Selenicereus undatus HOM05D001165 ORTHO05D004839 4.6e-41 172.2 116 71.6
RcHm_v2.0_Chr7g0214271 Rosa chinensis HOM05D004281 ORTHO05D004839 7.4e-39 164.9 97 82.5
Nitab4.5_0000013g0020 Nicotiana tabacum HOM05D004281 ORTHO05D004839 1.3e-38 164.1 168 57.7
Pp3s30_1010 Physcomitrium patens HOM05D000723 ORTHO05D004839 1.4e-37 160.6 148 52.0
Duzib093G0607 Durio zibethinus HOM05D004281 ORTHO05D004839 2.6e-36 156.4 114 71.1
CSS0034557 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 3.8e-35 152.5 182 53.3
Cc00_g12430 Coffea canephora HOM05D004281 ORTHO05D004839 2.4e-34 149.8 77 94.8
Ca_28575_v3 Cicer arietinum L. HOM05D004281 ORTHO05D004839 2.7e-33 146.4 145 48.3
CSS0012879 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 7.9e-33 144.8 209 48.8
Lj5A837G66 Lonicera japonica HOM05D004281 ORTHO05D004839 1.8e-32 143.7 74 93.2
CSS0024434 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 2.3e-32 143.3 182 51.6
Cc00_g08810 Coffea canephora HOM05D004281 ORTHO05D004839 3.9e-32 142.5 77 90.9
Cc00_g23590 Coffea canephora HOM05D004281 ORTHO05D004839 2.0e-28 130.2 86 77.9
C08p46660 Brassica napus HOM05D004281 ORTHO05D004839 1.4e-26 124.0 112 59.8
Cc00_g34060 Coffea canephora HOM05D004281 ORTHO05D004839 1.6e-25 120.6 83 72.3
TAR362G0423 Trochodendron aralioides HOM05D004281 ORTHO05D004839 1.8e-24 117.1 167 49.1
C05p19750 Brassica napus HOM05D004281 ORTHO05D004839 2.3e-24 116.7 110 57.3
BolC8t52208H Brassica oleracea HOM05D004281 ORTHO05D004839 9.6e-23 111.3 127 50.4
BcaC05g25876 Brassica carinata HOM05D004281 ORTHO05D004839 2.7e-17 93.2 70 67.1
QL08p018107 Quercus lobata HOM05D004281 ORTHO05D004839 4.6e-17 92.4 47 89.4
Cc00_g15810 Coffea canephora HOM05D004281 ORTHO05D004839 7.4e-15 85.1 55 72.7
Cc00_g15820 Coffea canephora HOM05D004281 ORTHO05D004839 1.6e-14 84.0 114 47.4
Cc00_g25460 Coffea canephora HOM05D004281 ORTHO05D004839 2.2e-14 83.6 42 92.9
Cc05_g00900 Coffea canephora HOM05D004281 ORTHO05D004839 2.8e-14 83.2 42 90.5
Lsat_1_v5_gn_8_13760 Lactuca sativa HOM05D004281 ORTHO05D004839 2.4e-13 80.1 125 44.0
Actinidia34560 Actinidia chinensis HOM05D028692 ORTHO05D015213 1.9e-10 70.5 37 86.5
Hma1.2p1_0872F.1_g231180 Hydrangea macrophylla HOM05D004281 ORTHO05D004839 3.6e-09 66.2 69 60.9
Cc05_g01000 Coffea canephora HOM05D004281 ORTHO05D004839 6.7e-08 62.0 32 90.6
Cfa027194 Carpinus fangiana HOM05D004281 ORTHO05D004839 1.5e-07 60.8 171 26.9
Cc00_g07230 Coffea canephora HOM05D004281 ORTHO05D004839 2.2e-06 57.0 40 75.0
Cc00_g07240 Coffea canephora HOM05D004281 ORTHO05D004839 2.2e-06 57.0 40 75.0
AagrBONN_evm.TU.Sc2ySwM_344.4461 Anthoceros agrestis HOM05D004281 ORTHO05D004839 4.8e-06 55.8 44 63.6
Cc05_g01010 Coffea canephora HOM05D004281 ORTHO05D004839 8.2e-06 55.1 32 84.4


User provided reference genes

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