Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR365G0642 Trochodendron aralioides HOM05D003821 ORTHO05D004449 6.0e-37 157.5 115 100.0
Nn4g25849 Nelumbo nucifera HOM05D003821 ORTHO05D004449 3.4e-16 88.6 87 64.4
CiPaw.07G106400 Carya illinoinensis HOM05D003821 ORTHO05D004449 7.7e-16 87.4 90 52.2
Psat3g022560 Pisum sativum HOM05D003821 ORTHO05D004449 2.9e-15 85.5 82 56.1
Thecc.01G297100 Theobroma cacao HOM05D003821 ORTHO05D004449 5.0e-15 84.7 88 86.4
CiPaw.08G097300 Carya illinoinensis HOM05D003821 ORTHO05D004449 1.9e-14 82.8 88 51.1
Ciclev10023083m.g Citrus clementina HOM05D003821 ORTHO05D004449 1.9e-14 82.8 88 85.2
Prupe.1G136900 Prunus persica HOM05D003821 ORTHO05D004449 7.2e-14 80.9 88 83.0
Duzib133G0834 Durio zibethinus HOM05D003821 ORTHO05D004449 9.4e-14 80.5 90 82.2
Potri.014G131701 Populus trichocarpa HOM05D003821 ORTHO05D004449 1.2e-13 80.1 84 75.0
FvH4_4g18020 Fragaria vesca HOM05D003821 ORTHO05D004449 2.1e-13 79.3 89 65.2
THA.LOC104817510 Tarenaya hassleriana HOM05D003821 ORTHO05D004449 2.1e-13 79.3 88 83.0
Manes.15G012400 Manihot esculenta HOM05D003821 ORTHO05D004449 3.6e-13 78.6 88 50.0
Duzib138G0767 Durio zibethinus HOM05D003821 ORTHO05D004449 1.0e-12 77.0 86 81.4
Hma1.2p1_0078F.1_g040550 Hydrangea macrophylla HOM05D003821 ORTHO05D004449 1.4e-12 76.6 87 52.9
Lj5g0023739 Lotus japonicus HOM05D003821 ORTHO05D004449 2.3e-12 75.9 83 81.9
Manes.01G217100 Manihot esculenta HOM05D003821 ORTHO05D004449 2.3e-12 75.9 88 84.1
Prupe.8G258100 Prunus persica HOM05D003821 ORTHO05D004449 3.0e-12 75.5 88 79.5
Ca_10352_v3 Cicer arietinum L. HOM05D003821 ORTHO05D004449 5.1e-12 74.7 88 48.9
Gorai.007G128900 Gossypium raimondii HOM05D003821 ORTHO05D004449 5.1e-12 74.7 88 80.7
Atru.chr5.1182 Acer truncatum HOM05D003821 ORTHO05D004449 6.7e-12 74.3 88 81.8
Gohir.D08G138600 Gossypium hirsutum HOM05D003821 ORTHO05D004449 6.7e-12 74.3 88 63.6
Sed0001615 Sechium edule HOM05D003821 ORTHO05D004449 6.7e-12 74.3 101 47.5
TWI53G1984 Tripterygium wilfordii HOM05D003821 ORTHO05D004449 8.8e-12 73.9 86 51.2
Migut.N00088 Erythranthe guttata HOM05D003821 ORTHO05D004449 1.1e-11 73.6 88 80.7
Gohir.A11G115200 Gossypium hirsutum HOM05D003821 ORTHO05D004449 1.1e-11 73.6 88 80.7
Gohir.D11G120200 Gossypium hirsutum HOM05D003821 ORTHO05D004449 1.1e-11 73.6 88 80.7
Gohir.D12G011000 Gossypium hirsutum HOM05D003821 ORTHO05D004449 1.1e-11 73.6 88 80.7
Manes.03G194900 Manihot esculenta HOM05D003821 ORTHO05D004449 1.1e-11 73.6 78 85.9
PGR031G0623 Punica granatum HOM05D003821 ORTHO05D004449 1.1e-11 73.6 88 78.4
FvH4_2g25350 Fragaria vesca HOM05D003821 ORTHO05D004449 1.5e-11 73.2 88 64.8
TWI09G0102 Tripterygium wilfordii HOM05D003821 ORTHO05D004449 1.5e-11 73.2 86 51.2
TWI14G0562 Tripterygium wilfordii HOM05D003821 ORTHO05D004449 2.0e-11 72.8 88 79.5
CANSAT78G0465 Cannabis sativa HOM05D003821 ORTHO05D004449 2.5e-11 72.4 82 63.4
CANSAT25G1361 Cannabis sativa HOM05D003821 ORTHO05D004449 3.3e-11 72.0 88 65.9
Gohir.A08G117600 Gossypium hirsutum HOM05D003821 ORTHO05D004449 3.3e-11 72.0 88 65.9
Gohir.A12G010600 Gossypium hirsutum HOM05D003821 ORTHO05D004449 3.3e-11 72.0 88 79.5
Gorai.008G011000 Gossypium raimondii HOM05D003821 ORTHO05D004449 4.3e-11 71.6 87 80.5
Potri.010G025000 Populus trichocarpa HOM05D003821 ORTHO05D004449 5.7e-11 71.2 88 76.1
FAN12G1096 Fragaria x ananassa HOM05D003821 ORTHO05D004449 2.2e-10 69.3 89 44.9
CsaV3_7G029090 Cucumis sativus L. HOM05D003821 ORTHO05D004449 2.8e-10 68.9 87 48.3
QL10p053326 Quercus lobata HOM05D003821 ORTHO05D004449 2.8e-10 68.9 105 40.0
QL10p054532 Quercus lobata HOM05D003821 ORTHO05D004449 2.8e-10 68.9 105 40.0
Haze_04896 Corylus avellana HOM05D003821 ORTHO05D004449 3.7e-10 68.6 106 42.5
THA.LOC104802574 Tarenaya hassleriana HOM05D003821 ORTHO05D004449 4.8e-10 68.2 88 78.4
Oeu026313.1 Olea europaea HOM05D003821 ORTHO05D004449 8.2e-10 67.4 88 47.7
THA.LOC104820264 Tarenaya hassleriana HOM05D003821 ORTHO05D004449 8.2e-10 67.4 73 72.6
THA.LOC104821775 Tarenaya hassleriana HOM05D003821 ORTHO05D004449 8.2e-10 67.4 76 86.8
ClCG09G006050 Citrullus lanatus HOM05D003821 ORTHO05D004449 1.1e-09 67.0 81 49.4
Thecc.04G284600 Theobroma cacao HOM05D003821 ORTHO05D004449 1.4e-09 66.6 84 52.4
AT4G15802 Arabidopsis thaliana HOM05D003821 ORTHO05D004449 1.8e-09 66.2 86 46.5
Medtr1g088760 Medicago truncatula HOM05D003821 ORTHO05D004449 1.8e-09 66.2 118 39.0
Oeu027727.1 Olea europaea HOM05D003821 ORTHO05D004449 2.4e-09 65.9 88 46.6
Potri.008G208100 Populus trichocarpa HOM05D003821 ORTHO05D004449 2.4e-09 65.9 88 75.0
Rhsim02G0009100 Rhododendron simsii HOM05D003821 ORTHO05D004449 2.4e-09 65.9 102 45.1
CARHR290310 Cardamine hirsuta HOM05D003821 ORTHO05D004449 3.1e-09 65.5 86 46.5
Migut.G00164 Erythranthe guttata HOM05D003821 ORTHO05D004449 3.1e-09 65.5 86 46.5
AL7G39490 Arabidopsis lyrata HOM05D003821 ORTHO05D004449 4.1e-09 65.1 86 45.3
MSTRG.3917 Avicennia marina HOM05D003821 ORTHO05D004449 4.1e-09 65.1 89 44.9
C01p27060 Brassica napus HOM05D003821 ORTHO05D004449 5.3e-09 64.7 35 88.6
Phvul.009G247900 Phaseolus vulgaris HOM05D003821 ORTHO05D004449 5.3e-09 64.7 78 46.2
MSTRG.24794 Avicennia marina HOM05D003821 ORTHO05D004449 6.9e-09 64.3 87 46.0
Glyma.10G019600 Glycine max HOM05D003821 ORTHO05D004449 6.9e-09 64.3 88 76.1
Psat6g166600 Pisum sativum HOM05D003821 ORTHO05D004449 6.9e-09 64.3 90 70.0
TPR.G9594 Trifolium pratense HOM05D003821 ORTHO05D004449 6.9e-09 64.3 31 96.8
Lalb_Chr15g0078581 Lupinus albus HOM05D003821 ORTHO05D004449 9.1e-09 63.9 31 96.8
PGR004G1635 Punica granatum HOM05D003821 ORTHO05D004449 9.1e-09 63.9 82 79.3
Carub.0007s2585 Capsella rubella HOM05D003821 ORTHO05D004449 1.2e-08 63.5 79 48.1
SGA_v2.0_scaffold147G36288 Striga asiatica HOM05D003821 ORTHO05D004449 1.2e-08 63.5 95 45.3
DCAR_002813 Daucus carota HOM05D003821 ORTHO05D004449 2.0e-08 62.8 88 47.7
ATR0580G132 Amborella trichopoda HOM05D003821 ORTHO05D004449 2.6e-08 62.4 99 44.4
Haze_01204 Corylus avellana HOM05D003821 ORTHO05D004449 2.6e-08 62.4 111 37.8
MD11G1304500 Malus domestica HOM05D003821 ORTHO05D004449 2.6e-08 62.4 31 93.5
Actinidia32231 Actinidia chinensis HOM05D003821 ORTHO05D004449 3.4e-08 62.0 88 47.7
MELO3C016019.2 Cucumis melo HOM05D003821 ORTHO05D004449 3.4e-08 62.0 31 93.5
FAN15G2810 Fragaria x ananassa HOM05D003821 ORTHO05D004449 3.4e-08 62.0 88 44.3
FAN24G2279 Fragaria x ananassa HOM05D003821 ORTHO05D004449 3.4e-08 62.0 88 44.3
Medtr7g108615 Medicago truncatula HOM05D003821 ORTHO05D004449 3.4e-08 62.0 31 93.5
TWI79G0264 Tripterygium wilfordii HOM05D003821 ORTHO05D004449 4.5e-08 61.6 75 46.7
GSVIVG01017758001 Vitis vinifera HOM05D003821 ORTHO05D004449 4.5e-08 61.6 32 90.6
BolC7t45268H Brassica oleracea HOM05D003821 ORTHO05D004449 5.9e-08 61.2 90 44.4
Lalb_Chr18g0047131 Lupinus albus HOM05D003821 ORTHO05D004449 5.9e-08 61.2 31 93.5
Phvul.007G106500 Phaseolus vulgaris HOM05D003821 ORTHO05D004449 5.9e-08 61.2 83 73.5
BcaB04g18333 Brassica carinata HOM05D003821 ORTHO05D004449 7.7e-08 60.8 79 46.8
Sp7g14190 Schrenkiella parvula HOM05D003821 ORTHO05D004449 7.7e-08 60.8 31 93.5
Ciclev10007067m.g Citrus clementina HOM05D003821 ORTHO05D004449 1.0e-07 60.5 31 90.3
Glyma.02G154700 Glycine max HOM05D003821 ORTHO05D004449 1.0e-07 60.5 88 75.0
Nn3g21436 Nelumbo nucifera HOM05D000763 ORTHO05D000599 1.3e-07 60.1 32 87.5
BraA03t14035Z Brassica rapa HOM05D003821 ORTHO05D004449 2.2e-07 59.3 87 44.8
Hund05412 Selenicereus undatus HOM05D003821 ORTHO05D004449 2.2e-07 59.3 31 87.1
Atru.chr4.2835 Acer truncatum HOM05D003821 ORTHO05D004449 2.9e-07 58.9 31 87.1
FAN27G2508 Fragaria x ananassa HOM05D003821 ORTHO05D004449 2.9e-07 58.9 88 43.2
BcaC06g32965 Brassica carinata HOM05D003821 ORTHO05D004449 3.8e-07 58.5 84 45.2
FAN20G2567 Fragaria x ananassa HOM05D000897 ORTHO05D000716 3.8e-07 58.5 91 41.8
AUR62033168 Chenopodium quinoa HOM05D003821 ORTHO05D004449 5.0e-07 58.2 88 42.0
Gohir.D01G051650 Gossypium hirsutum HOM05D003821 ORTHO05D004449 6.5e-07 57.8 33 81.8
Gorai.002G124200 Gossypium raimondii HOM05D003821 ORTHO05D004449 6.5e-07 57.8 33 81.8
RcHm_v2.0_Chr6g0293541 Rosa chinensis HOM05D003821 ORTHO05D004449 6.5e-07 57.8 109 37.6
Cpa.g.sc9.208 Carica papaya HOM05D003821 ORTHO05D004449 8.5e-07 57.4 99 40.4
AUR62008616 Chenopodium quinoa HOM05D003821 ORTHO05D004449 8.5e-07 57.4 88 42.0
Gohir.A02G049300 Gossypium hirsutum HOM05D003821 ORTHO05D004449 8.5e-07 57.4 75 80.0
Cc03_g01940 Coffea canephora HOM05D003821 ORTHO05D004449 1.1e-06 57.0 32 84.4
Gohir.D08G106266 Gossypium hirsutum HOM05D003821 ORTHO05D004449 1.1e-06 57.0 33 81.8
Nitab4.5_0000191g0110 Nicotiana tabacum HOM05D003821 ORTHO05D004449 1.1e-06 57.0 31 83.9
Peaxi162Scf00086g00435 Petunia axillaris HOM05D003821 ORTHO05D004449 1.1e-06 57.0 31 83.9
COL.COLO4_13871 Corchorus olitorius HOM05D003821 ORTHO05D004449 1.4e-06 56.6 95 43.2
RcHm_v2.0_Chr4g0422231 Rosa chinensis HOM05D003821 ORTHO05D004449 1.4e-06 56.6 31 83.9
Lj4g0002252 Lotus japonicus HOM05D003821 ORTHO05D004449 1.9e-06 56.2 40 70.0
TPR.G33980 Trifolium pratense HOM05D003821 ORTHO05D004449 1.9e-06 56.2 108 38.0
vmacro08148 Vaccinium macrocarpon HOM05D003821 ORTHO05D004449 1.9e-06 56.2 56 57.1
BcaNung00244 Brassica carinata HOM05D000802 ORTHO05D013138 2.5e-06 55.8 84 44.0
MD03G1285000 Malus domestica HOM05D003821 ORTHO05D004449 2.5e-06 55.8 29 89.7
Gohir.D08G087850 Gossypium hirsutum HOM05D003821 ORTHO05D004449 3.2e-06 55.5 31 83.9
Sc24g0003850 Simmondsia chinensis HOM05D000714 ORTHO05D000544 3.2e-06 55.5 88 44.3
arahy.Tifrunner.gnm1.ann1.LH51N9 Arachis hypogaea HOM05D003821 ORTHO05D004449 4.2e-06 55.1 28 92.9
arahy.Tifrunner.gnm1.ann1.UD53LE Arachis hypogaea HOM05D003821 ORTHO05D004449 4.2e-06 55.1 27 96.3
CAN.G185.14 Capsicum annuum HOM05D003821 ORTHO05D004449 4.2e-06 55.1 87 41.4
FAN07G0841 Fragaria x ananassa HOM05D003821 ORTHO05D004449 5.5e-06 54.7 90 36.7
Gorai.004G142200 Gossypium raimondii HOM05D003821 ORTHO05D004449 5.5e-06 54.7 128 34.4
Peaxi162Scf00048g00209 Petunia axillaris HOM05D003821 ORTHO05D004449 5.5e-06 54.7 72 45.8
Sabra10G0014100 Salix brachista HOM05D003821 ORTHO05D004449 5.5e-06 54.7 31 80.6
TAR362G0968 Trochodendron aralioides HOM05D003821 ORTHO05D004449 5.5e-06 54.7 92 43.5
BraA01t02079Z Brassica rapa HOM05D000802 ORTHO05D013138 7.2e-06 54.3 31 90.3


User provided reference genes

Program Settings