Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR365G0624 Trochodendron aralioides HOM05D004556 ORTHO05D005298 3.0e-168 595.1 303 100.0
TAR362G0361 Trochodendron aralioides HOM05D004556 ORTHO05D005298 1.3e-150 536.6 303 88.4
Thecc.05G287400 Theobroma cacao HOM05D004556 ORTHO05D005298 3.3e-143 511.9 300 86.0
Dinv17770 Davidia involucrata HOM05D004556 ORTHO05D005298 7.4e-143 510.8 303 83.5
GSVIVG01021835001 Vitis vinifera HOM05D004556 ORTHO05D005298 1.6e-142 509.6 300 83.3
Prupe.6G340800 Prunus persica HOM05D004556 ORTHO05D005298 4.8e-142 508.1 303 84.5
Gohir.D08G231400 Gossypium hirsutum HOM05D004556 ORTHO05D005298 8.2e-142 507.3 300 85.0
Gorai.004G245800 Gossypium raimondii HOM05D004556 ORTHO05D005298 2.4e-141 505.8 300 84.7
Gohir.A08G214400 Gossypium hirsutum HOM05D004556 ORTHO05D005298 5.3e-141 504.6 300 84.7
CSS0028825 Camellia sinensis var. sinensis HOM05D004556 ORTHO05D005298 6.9e-141 504.2 303 83.2
QL03p024856 Quercus lobata HOM05D004556 ORTHO05D005298 6.9e-141 504.2 302 82.5
Duzib106G0883 Durio zibethinus HOM05D004556 ORTHO05D005298 9.0e-141 503.8 300 83.0
Aqoxy5G00420 Aquilegia oxysepala HOM05D004556 ORTHO05D005298 1.2e-140 503.4 300 81.7
Duzib128G0953 Durio zibethinus HOM05D004556 ORTHO05D005298 1.5e-140 503.1 300 83.3
COL.COLO4_15298 Corchorus olitorius HOM05D004556 ORTHO05D005298 2.0e-140 502.7 300 82.7
Dinv11531 Davidia involucrata HOM05D004556 ORTHO05D005298 3.4e-140 501.9 300 82.7
VMungo0540G1874 Vigna mungo HOM05D004556 ORTHO05D005298 1.3e-139 500.0 303 82.2
Glyma.03G245800 Glycine max HOM05D004556 ORTHO05D005298 2.2e-139 499.2 303 81.8
Gorai.007G284100 Gossypium raimondii HOM05D004556 ORTHO05D005298 5.0e-139 498.0 300 82.7
Duzib177G0375 Durio zibethinus HOM05D004556 ORTHO05D005298 6.5e-139 497.7 316 79.4
Gohir.D11G264100 Gossypium hirsutum HOM05D004556 ORTHO05D005298 1.9e-138 496.1 300 82.3
Phvul.006G100100 Phaseolus vulgaris HOM05D004556 ORTHO05D005298 1.9e-138 496.1 303 81.8
CSS0008105 Camellia sinensis var. sinensis HOM05D004556 ORTHO05D005298 3.2e-138 495.4 303 82.2
MD12G1237600 Malus domestica HOM05D004556 ORTHO05D005298 4.2e-138 495.0 303 82.5
arahy.Tifrunner.gnm1.ann1.SCJ0TV Arachis hypogaea HOM05D004556 ORTHO05D005298 1.2e-137 493.4 303 81.5
TWI56G0949 Tripterygium wilfordii HOM05D004556 ORTHO05D005298 1.2e-137 493.4 300 82.0
Hma1.2p1_0083F.1_g042880 Hydrangea macrophylla HOM05D004556 ORTHO05D005298 1.6e-137 493.0 303 80.9
MD04G1221600 Malus domestica HOM05D004556 ORTHO05D005298 1.6e-137 493.0 303 83.2
arahy.Tifrunner.gnm1.ann1.ZA55QJ Arachis hypogaea HOM05D004556 ORTHO05D005298 2.1e-137 492.7 303 81.5
ClCG02G016480 Citrullus lanatus HOM05D004556 ORTHO05D005298 2.1e-137 492.7 300 80.3
Lalb_Chr15g0076861 Lupinus albus HOM05D004556 ORTHO05D005298 2.1e-137 492.7 303 81.8
CiPaw.07G064700 Carya illinoinensis HOM05D004556 ORTHO05D005298 2.7e-137 492.3 300 81.3
RcHm_v2.0_Chr3g0451841 Rosa chinensis HOM05D004556 ORTHO05D005298 2.7e-137 492.3 303 81.2
Actinidia05768 Actinidia chinensis HOM05D004556 ORTHO05D005298 4.6e-137 491.5 300 82.0
Ciclev10001991m.g Citrus clementina HOM05D004556 ORTHO05D005298 4.6e-137 491.5 299 80.9
Glyma.19G243300 Glycine max HOM05D004556 ORTHO05D005298 6.1e-137 491.1 303 81.2
FAN05G0551 Fragaria x ananassa HOM05D004556 ORTHO05D005298 2.3e-136 489.2 299 81.6
Cpa.g.sc117.71 Carica papaya HOM05D004556 ORTHO05D005298 3.0e-136 488.8 303 79.9
CsaV3_2G004290 Cucumis sativus L. HOM05D004556 ORTHO05D005298 5.1e-136 488.0 301 79.7
FAN02G1055 Fragaria x ananassa HOM05D004556 ORTHO05D005298 5.1e-136 488.0 303 81.2
CANSAT54G0892 Cannabis sativa HOM05D004556 ORTHO05D005298 6.7e-136 487.6 303 81.2
Potri.005G051300 Populus trichocarpa HOM05D004556 ORTHO05D005298 8.7e-136 487.3 303 78.5
MELO3C004366.2 Cucumis melo HOM05D004556 ORTHO05D005298 1.5e-135 486.5 301 79.4
HPP92_025859 Vanilla planifolia HOM05D004556 ORTHO05D005298 1.5e-135 486.5 303 79.9
FAN05G3160 Fragaria x ananassa HOM05D004556 ORTHO05D005298 2.5e-135 485.7 296 81.8
Lalb_Chr18g0045051 Lupinus albus HOM05D004556 ORTHO05D005298 2.5e-135 485.7 303 81.2
Medtr7g114810 Medicago truncatula HOM05D004556 ORTHO05D005298 3.3e-135 485.3 303 79.9
CAN.G134.134 Capsicum annuum HOM05D004556 ORTHO05D005298 7.4e-135 484.2 300 78.7
Ca_09410_v3 Cicer arietinum L. HOM05D004556 ORTHO05D005298 7.4e-135 484.2 303 79.9
PGSC0003DMG400022512 Solanum tuberosum HOM05D004556 ORTHO05D005298 7.4e-135 484.2 300 78.7
Atru.chr2.783 Acer truncatum HOM05D004556 ORTHO05D005298 1.6e-134 483.0 300 79.0
FvH4_6g03340 Fragaria vesca HOM05D004556 ORTHO05D005298 2.2e-134 482.6 303 79.5
Sopen01g041350 Solanum pennellii HOM05D004556 ORTHO05D005298 6.3e-134 481.1 300 78.0
TPR.G6984 Trifolium pratense HOM05D004556 ORTHO05D005298 6.3e-134 481.1 303 79.2
Sed0015548 Sechium edule HOM05D004556 ORTHO05D005298 8.2e-134 480.7 300 79.0
Nitab4.5_0005441g0010 Nicotiana tabacum HOM05D004556 ORTHO05D005298 1.1e-133 480.3 300 78.7
Sabra13G0036200 Salix brachista HOM05D004556 ORTHO05D005298 1.4e-133 479.9 303 78.9
ATR0665G084 Amborella trichopoda HOM05D004556 ORTHO05D005298 2.4e-133 479.2 300 78.3
Potri.013G038700 Populus trichocarpa HOM05D004556 ORTHO05D005298 2.4e-133 479.2 303 77.9
Rhsim05G0160800 Rhododendron simsii HOM05D004556 ORTHO05D005298 2.4e-133 479.2 303 79.9
PSO210G7536 Papaver somniferum HOM05D004556 ORTHO05D005298 4.1e-133 478.4 300 79.0
PGR083G2383 Punica granatum HOM05D004556 ORTHO05D005298 4.1e-133 478.4 303 79.5
FAN14G0561 Fragaria x ananassa HOM05D004556 ORTHO05D005298 1.5e-132 476.5 299 79.6
Lj1g0006589 Lotus japonicus HOM05D004556 ORTHO05D005298 3.4e-132 475.3 303 79.2
Manes.09G154700 Manihot esculenta HOM05D004556 ORTHO05D005298 3.4e-132 475.3 303 78.5
Hund22124 Selenicereus undatus HOM05D004556 ORTHO05D005298 4.5e-132 474.9 300 77.3
THA.LOC104818641 Tarenaya hassleriana HOM05D004556 ORTHO05D005298 5.9e-132 474.6 302 78.8
Eucgr.B01695 Eucalyptus grandis HOM05D004556 ORTHO05D005298 7.7e-132 474.2 303 78.2
Sed0026396 Sechium edule HOM05D004556 ORTHO05D005298 1.0e-131 473.8 300 77.7
PSO832G3279 Papaver somniferum HOM05D004556 ORTHO05D005298 1.3e-131 473.4 300 78.0
Cc02_g31820 Coffea canephora HOM05D004556 ORTHO05D005298 2.9e-131 472.2 300 78.3
Lsat_1_v5_gn_1_96700 Lactuca sativa HOM05D004556 ORTHO05D005298 6.5e-131 471.1 300 77.7
MSTRG.5093 Avicennia marina HOM05D004556 ORTHO05D005298 8.5e-131 470.7 299 76.9
Peaxi162Scf01049g00037 Petunia axillaris HOM05D004556 ORTHO05D005298 8.5e-131 470.7 300 77.0
DCAR_029537 Daucus carota HOM05D004556 ORTHO05D005298 2.5e-130 469.2 303 76.9
EL10Ac8g19247 Beta vulgaris HOM05D004556 ORTHO05D005298 5.5e-130 468.0 303 75.2
HanXRQChr08g0230031 Helianthus annuus HOM05D004556 ORTHO05D005298 5.5e-130 468.0 300 76.7
MBI11_g10323_MAGBIO Magnolia biondii HOM05D004556 ORTHO05D005298 1.2e-129 466.8 309 76.7
Cfa006453 Carpinus fangiana HOM05D004556 ORTHO05D005298 3.6e-129 465.3 300 77.7
vmacro21412 Vaccinium macrocarpon HOM05D004556 ORTHO05D005298 7.9e-129 464.2 320 74.1
SGA_v2.0_scaffold196G40974 Striga asiatica HOM05D004556 ORTHO05D005298 1.4e-128 463.4 303 75.2
BcaC01g04346 Brassica carinata HOM05D004556 ORTHO05D005298 1.8e-128 463.0 302 77.8
AL3G14990 Arabidopsis lyrata HOM05D004556 ORTHO05D005298 3.9e-128 461.8 302 77.8
CDE10G0245 Ceratophyllum demersum HOM05D004556 ORTHO05D005298 3.9e-128 461.8 299 75.9
ECA232G2012 Erigeron canadensis HOM05D004556 ORTHO05D005298 5.1e-128 461.5 299 77.3
BcaB04g19297 Brassica carinata HOM05D004556 ORTHO05D005298 1.1e-127 460.3 302 77.8
Thhalv10021217m.g Eutrema salsugineum HOM05D004556 ORTHO05D005298 1.1e-127 460.3 302 77.2
A03p33860 Brassica napus HOM05D004556 ORTHO05D005298 2.0e-127 459.5 302 77.5
BraA03t12560Z Brassica rapa HOM05D004556 ORTHO05D005298 2.0e-127 459.5 302 77.5
Sc09g0003820 Simmondsia chinensis HOM05D004556 ORTHO05D005298 2.6e-127 459.1 303 76.2
AT3G04830 Arabidopsis thaliana HOM05D004556 ORTHO05D005298 4.4e-127 458.4 302 76.8
C03p41170 Brassica napus HOM05D004556 ORTHO05D005298 4.4e-127 458.4 303 77.6
AUR62034008 Chenopodium quinoa HOM05D004556 ORTHO05D005298 5.7e-127 458.0 299 75.3
AUR62027473 Chenopodium quinoa HOM05D004556 ORTHO05D005298 9.7e-127 457.2 300 75.0
unitig_0.g2302 Utricularia gibba HOM05D004556 ORTHO05D005298 9.7e-127 457.2 303 73.6
SalBow4G3027 Salvia bowleyana HOM05D004556 ORTHO05D005298 1.7e-126 456.4 303 73.9
Sp3g03660 Schrenkiella parvula HOM05D004556 ORTHO05D005298 1.7e-126 456.4 302 76.8
SGA_v2.0_scaffold43G16266 Striga asiatica HOM05D004556 ORTHO05D005298 2.2e-126 456.1 300 75.0
BolC3t16405H Brassica oleracea HOM05D004556 ORTHO05D005298 3.7e-126 455.3 302 76.8
Carub.0003s0402 Capsella rubella HOM05D004556 ORTHO05D005298 3.7e-126 455.3 305 76.1
BolC5t34901H Brassica oleracea HOM05D004556 ORTHO05D005298 1.8e-125 453.0 302 75.8
C05p62480 Brassica napus HOM05D004556 ORTHO05D005298 4.1e-125 451.8 302 76.2
Thhalv10004492m.g Eutrema salsugineum HOM05D004556 ORTHO05D005298 9.1e-125 450.7 303 74.9
Ah.14g085270 Amaranthus hybridus HOM05D004556 ORTHO05D005298 2.0e-124 449.5 301 74.1
Sabra05G0045300 Salix brachista HOM05D004556 ORTHO05D005298 5.9e-124 448.0 339 68.4
AL6G40460 Arabidopsis lyrata HOM05D004556 ORTHO05D005298 1.7e-123 446.4 303 73.3
Nitab4.5_0005729g0050 Nicotiana tabacum HOM05D004556 ORTHO05D005298 1.7e-123 446.4 300 74.7
BraA05t22977Z Brassica rapa HOM05D004556 ORTHO05D005298 5.0e-123 444.9 302 75.5
AT5G28220 Arabidopsis thaliana HOM05D004556 ORTHO05D005298 2.5e-122 442.6 302 73.5
Carub.0006s2567 Capsella rubella HOM05D004556 ORTHO05D005298 3.2e-122 442.2 303 72.6
Aa31LG5G15220 Aethionema arabicum HOM05D004556 ORTHO05D005298 9.4e-122 440.7 316 71.8
A05p42760 Brassica napus HOM05D004556 ORTHO05D005298 9.4e-122 440.7 302 74.5
SEGI_22763 Sequoiadendron giganteum HOM05D004556 ORTHO05D005298 2.7e-121 439.1 302 70.5
SalBow4G2463 Salvia bowleyana HOM05D004556 ORTHO05D005298 5.2e-120 434.9 338 66.3
Dinv00306 Davidia involucrata HOM05D004556 ORTHO05D005298 1.4e-117 426.8 247 84.6
Manes.08G132100 Manihot esculenta HOM05D004556 ORTHO05D005298 4.5e-116 421.8 246 82.9
Nn1g02409 Nelumbo nucifera HOM05D004556 ORTHO05D005298 5.9e-116 421.4 303 72.6
Solyc01g097740.3 Solanum lycopersicum HOM05D004556 ORTHO05D005298 5.0e-115 418.3 259 78.4
Os02g0127000 Oryza sativa ssp. japonica HOM05D004556 ORTHO05D005298 1.9e-114 416.4 297 68.4
Zm00001eb210860 Zea mays HOM05D004556 ORTHO05D005298 6.7e-112 407.9 292 68.2
TWI12G0865 Tripterygium wilfordii HOM05D004556 ORTHO05D005298 2.0e-111 406.4 300 70.3
SHI18353 Sapria himalayana HOM05D004556 ORTHO05D005298 9.7e-111 404.1 340 61.8
Zm00001eb064390 Zea mays HOM05D004556 ORTHO05D005298 4.8e-110 401.7 287 68.3
HanXRQChr11g0340961 Helianthus annuus HOM05D004556 ORTHO05D005298 1.8e-109 399.8 300 68.0
Oeu045907.1 Olea europaea HOM05D004556 ORTHO05D005298 5.9e-108 394.8 312 67.3
Pp3c22_11510 Physcomitrium patens HOM05D004556 ORTHO05D005298 3.2e-106 389.0 302 65.6
Mapoly0010s0190 Marchantia polymorpha HOM05D004556 ORTHO05D005298 3.6e-105 385.6 297 66.3
vmacro21326 Vaccinium macrocarpon HOM05D004556 ORTHO05D005298 6.5e-99 364.8 508 44.3
Gohir.A11G254300 Gossypium hirsutum HOM05D004556 ORTHO05D005298 1.2e-97 360.5 300 65.3
SMO351G0459 Selaginella moellendorffii HOM05D004556 ORTHO05D005298 3.6e-97 359.0 288 61.1
THA.LOC104821680 Tarenaya hassleriana HOM05D004556 ORTHO05D005298 9.8e-95 350.9 209 82.3
Psat3g008080 Pisum sativum HOM05D004556 ORTHO05D005298 1.2e-92 344.0 209 79.9
Haze_04338 Corylus avellana HOM05D004556 ORTHO05D005298 1.8e-88 330.1 199 81.4
CARHR079090 Cardamine hirsuta HOM05D004556 ORTHO05D005298 6.8e-88 328.2 219 75.8
Lj9C665G12 Lonicera japonica HOM05D004556 ORTHO05D005298 3.9e-83 312.4 242 69.8
AagrBONN_evm.TU.Sc2ySwM_228.926 Anthoceros agrestis HOM05D004556 ORTHO05D005298 3.1e-80 302.8 246 60.6
CBR_g2743 Chara braunii HOM05D004556 ORTHO05D005298 3.5e-76 289.3 303 50.2
Rhsim05G0161200 Rhododendron simsii HOM05D004556 ORTHO05D005298 3.0e-75 286.2 245 64.1
Actinidia30934 Actinidia chinensis HOM05D004556 ORTHO05D005298 1.6e-65 253.8 154 82.5
PRCOL_00003723 Prasinoderma coloniale HOM05D004556 ORTHO05D005298 2.9e-54 216.5 287 41.5
Cre13.g579950 Chlamydomonas reinhardtii HOM05D004556 ORTHO05D005298 6.0e-52 208.8 298 39.9
TAR636G2079 Trochodendron aralioides HOM05D001851 ORTHO05D002237 8.1e-49 198.4 108 87.0
AagrBONN_evm.TU.Sc2ySwM_228.922 Anthoceros agrestis HOM05D004556 ORTHO05D005298 2.2e-46 190.3 166 57.2
Lj9C668G11 Lonicera japonica HOM05D004556 ORTHO05D005298 9.9e-39 164.9 199 50.8
Migut.O00800 Erythranthe guttata HOM05D004556 ORTHO05D005298 1.6e-36 157.5 102 75.5
Potri.013G038501 Populus trichocarpa HOM05D004556 ORTHO05D005298 1.9e-34 150.6 84 82.1
CARHR079080 Cardamine hirsuta HOM05D004556 ORTHO05D005298 9.3e-29 131.7 84 77.4
MCO08G289 Micromonas commoda HOM05D004556 ORTHO05D005298 1.2e-23 114.8 217 31.3
RcHm_v2.0_Chr6g0244381 Rosa chinensis HOM05D004556 ORTHO05D005298 3.4e-23 113.2 87 70.1
CBR_g57838 Chara braunii HOM05D006582 ORTHO05D008313 1.1e-21 108.2 155 40.6
AagrBONN_evm.TU.Sc2ySwM_228.821 Anthoceros agrestis HOM05D004556 ORTHO05D005298 4.6e-20 102.8 161 39.8
TPR.G31876 Trifolium pratense HOM05D004556 ORTHO05D005298 1.8e-19 100.9 86 62.8
BolC3t16406H Brassica oleracea HOM05D004556 ORTHO05D005298 3.0e-19 100.1 82 62.2
Lj9C665T13 Lonicera japonica HOM05D004556 ORTHO05D005298 3.0e-19 100.1 70 70.0
RcHm_v2.0_Chr5g0051541 Rosa chinensis HOM05D004556 ORTHO05D005298 5.7e-18 95.9 121 47.9
HanXRQChr13g0394071 Helianthus annuus HOM05D004556 ORTHO05D005298 2.2e-17 94.0 63 69.8
Cfa027249 Carpinus fangiana HOM05D004556 ORTHO05D123038 1.6e-12 77.8 238 27.7
BcaB04g19294 Brassica carinata HOM05D004556 ORTHO05D005298 1.2e-07 61.6 54 63.0
Lj9A668T37 Lonicera japonica HOM05D004556 ORTHO05D005298 5.9e-07 59.3 42 66.7
RcHm_v2.0_Chr7g0229041 Rosa chinensis HOM05D004556 ORTHO05D005298 5.9e-07 59.3 40 70.0


User provided reference genes

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