Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR365G0577 Trochodendron aralioides HOM05D003511 ORTHO05D416054 8.1e-193 676.8 314 100.0
Manes.10G075800 Manihot esculenta HOM05D003511 ORTHO05D004403 3.0e-22 110.2 77 68.8
Cpa.g.sc106.113 Carica papaya HOM05D003511 ORTHO05D004403 8.8e-22 108.6 57 84.2
Cfa004603 Carpinus fangiana HOM05D003511 ORTHO05D004403 8.8e-22 108.6 57 84.2
Haze_10199 Corylus avellana HOM05D003511 ORTHO05D004403 8.8e-22 108.6 57 84.2
Dinv42203 Davidia involucrata HOM05D003511 ORTHO05D004403 1.1e-21 108.2 57 84.2
TWI79G1106 Tripterygium wilfordii HOM05D003511 ORTHO05D004403 1.1e-21 108.2 77 66.2
Duzib052G0193 Durio zibethinus HOM05D003511 ORTHO05D004403 2.6e-21 107.1 57 82.5
Hma1.2p1_1518F.1_g288460 Hydrangea macrophylla HOM05D003511 ORTHO05D004403 3.3e-21 106.7 57 82.5
Oeu029532.2 Olea europaea HOM05D003511 ORTHO05D004403 3.3e-21 106.7 77 64.9
FAN15G2851 Fragaria x ananassa HOM05D003511 ORTHO05D004403 4.3e-21 106.3 61 75.4
Oeu013759.1 Olea europaea HOM05D003511 ORTHO05D004403 4.3e-21 106.3 72 69.4
Rhsim11G0158000 Rhododendron simsii HOM05D003511 ORTHO05D004403 4.3e-21 106.3 77 66.2
vmacro01992 Vaccinium macrocarpon HOM05D003511 ORTHO05D004403 4.3e-21 106.3 77 66.2
CSS0033371 Camellia sinensis var. sinensis HOM05D003511 ORTHO05D004403 5.7e-21 105.9 57 82.5
FvH4_2g04870 Fragaria vesca HOM05D003511 ORTHO05D004403 5.7e-21 105.9 57 80.7
FAN15G0970 Fragaria x ananassa HOM05D003511 ORTHO05D004403 5.7e-21 105.9 57 80.7
Nn5g30453 Nelumbo nucifera HOM05D003511 ORTHO05D004403 5.7e-21 105.9 77 67.5
Potri.009G093900 Populus trichocarpa HOM05D003511 ORTHO05D004403 5.7e-21 105.9 77 64.9
Sabra09G0072200 Salix brachista HOM05D003511 ORTHO05D004403 5.7e-21 105.9 57 80.7
Thecc.02G110900 Theobroma cacao HOM05D003511 ORTHO05D004403 5.7e-21 105.9 57 82.5
GSVIVG01037900001 Vitis vinifera HOM05D003511 ORTHO05D004403 5.7e-21 105.9 57 80.7
DCAR_001655 Daucus carota HOM05D003511 ORTHO05D004403 7.4e-21 105.5 77 64.9
Duzib132G0449 Durio zibethinus HOM05D003511 ORTHO05D004403 7.4e-21 105.5 57 82.5
Hma1.2p1_1518F.1_g288470 Hydrangea macrophylla HOM05D003511 ORTHO05D004403 7.4e-21 105.5 57 80.7
FAN20G1862 Fragaria x ananassa HOM05D003511 ORTHO05D004403 9.7e-21 105.1 57 78.9
CANSAT25G1711 Cannabis sativa HOM05D003511 ORTHO05D004403 1.3e-20 104.8 77 64.9
Rhsim11G0156500 Rhododendron simsii HOM05D003511 ORTHO05D004403 1.3e-20 104.8 77 64.9
RcHm_v2.0_Chr6g0254541 Rosa chinensis HOM05D003511 ORTHO05D004403 1.3e-20 104.8 57 78.9
CiPaw.05G013100 Carya illinoinensis HOM05D003511 ORTHO05D004403 1.7e-20 104.4 57 78.9
FAN27G0709 Fragaria x ananassa HOM05D003511 ORTHO05D004403 1.7e-20 104.4 57 78.9
CDE06G2550 Ceratophyllum demersum HOM05D003511 ORTHO05D004403 2.2e-20 104.0 57 78.9
Dinv15773 Davidia involucrata HOM05D003511 ORTHO05D004403 2.2e-20 104.0 108 51.9
Eucgr.I01093 Eucalyptus grandis HOM05D003511 ORTHO05D004403 2.2e-20 104.0 57 77.2
TWI75G1477 Tripterygium wilfordii HOM05D003511 ORTHO05D004403 2.8e-20 103.6 82 64.6
DCAR_001656 Daucus carota HOM05D003511 ORTHO05D004403 3.7e-20 103.2 83 59.0
Lsat_1_v5_gn_9_111920 Lactuca sativa HOM05D003511 ORTHO05D004403 3.7e-20 103.2 77 63.6
Lj5A215G58 Lonicera japonica HOM05D003511 ORTHO05D004403 3.7e-20 103.2 57 80.7
HanXRQChr09g0251071 Helianthus annuus HOM05D003511 ORTHO05D004403 4.8e-20 102.8 71 66.2
Nitab4.5_0001480g0130 Nicotiana tabacum HOM05D003511 ORTHO05D004403 4.8e-20 102.8 71 66.2
Ciclev10027816m.g Citrus clementina HOM05D003511 ORTHO05D004403 6.3e-20 102.4 77 63.6
FvH4_2g04810 Fragaria vesca HOM05D003511 ORTHO05D004403 6.3e-20 102.4 57 77.2
FAN24G0829 Fragaria x ananassa HOM05D003511 ORTHO05D004403 6.3e-20 102.4 57 77.2
Rhsim10G0162400 Rhododendron simsii HOM05D003511 ORTHO05D004403 6.3e-20 102.4 77 64.9
ATR0661G369 Amborella trichopoda HOM05D003511 ORTHO05D004403 8.2e-20 102.1 57 77.2
Potri.001G299000 Populus trichocarpa HOM05D003511 ORTHO05D004403 8.2e-20 102.1 77 63.6
Thecc.02G111000 Theobroma cacao HOM05D003511 ORTHO05D004403 8.2e-20 102.1 75 61.3
arahy.Tifrunner.gnm1.ann1.VN0KJM Arachis hypogaea HOM05D003511 ORTHO05D004403 1.1e-19 101.7 81 58.0
Duzib248G0534 Durio zibethinus HOM05D003511 ORTHO05D004403 1.1e-19 101.7 75 61.3
MBI16_g09476_MAGBIO Magnolia biondii HOM05D003511 ORTHO05D004403 1.1e-19 101.7 61 73.8
vmacro02524 Vaccinium macrocarpon HOM05D003511 ORTHO05D004403 1.1e-19 101.7 77 63.6
FAN24G2294 Fragaria x ananassa HOM05D003511 ORTHO05D004403 1.4e-19 101.3 58 79.3
MD10G1099200 Malus domestica HOM05D003511 ORTHO05D004403 1.4e-19 101.3 61 73.8
Nitab4.5_0003699g0020 Nicotiana tabacum HOM05D003511 ORTHO05D004403 1.8e-19 100.9 57 77.2
Rhsim10G0162100 Rhododendron simsii HOM05D003511 ORTHO05D004403 1.8e-19 100.9 77 64.9
TAR381G0671 Trochodendron aralioides HOM05D003511 ORTHO05D004403 1.8e-19 100.9 54 83.3
Migut.B00398 Erythranthe guttata HOM05D003511 ORTHO05D004403 2.4e-19 100.5 81 59.3
Manes.07G068400 Manihot esculenta HOM05D003511 ORTHO05D004403 2.4e-19 100.5 61 72.1
Prupe.8G137300 Prunus persica HOM05D003511 ORTHO05D004403 2.4e-19 100.5 77 61.0
QL11p032729 Quercus lobata HOM05D003511 ORTHO05D004403 2.4e-19 100.5 57 78.9
COL.COLO4_32573 Corchorus olitorius HOM05D003511 ORTHO05D004403 3.1e-19 100.1 75 61.3
Lj5C215T12 Lonicera japonica HOM05D003511 ORTHO05D004403 3.1e-19 100.1 77 63.6
Actinidia34394 Actinidia chinensis HOM05D003511 ORTHO05D004403 4.1e-19 99.8 77 62.3
ATR0205G005 Amborella trichopoda HOM05D003511 ORTHO05D004403 4.1e-19 99.8 57 73.7
Gohir.A12G021400 Gossypium hirsutum HOM05D003511 ORTHO05D004403 4.1e-19 99.8 57 75.4
Gohir.D12G021700 Gossypium hirsutum HOM05D003511 ORTHO05D004403 4.1e-19 99.8 71 63.4
Gorai.008G022000 Gossypium raimondii HOM05D003511 ORTHO05D004403 4.1e-19 99.8 71 63.4
COL.COLO4_32574 Corchorus olitorius HOM05D003511 ORTHO05D004403 5.3e-19 99.4 77 62.3
ECA240G1815 Erigeron canadensis HOM05D003511 ORTHO05D004403 5.3e-19 99.4 71 63.4
Lsat_1_v5_gn_5_116360 Lactuca sativa HOM05D003511 ORTHO05D004403 5.3e-19 99.4 77 62.3
Lj5C215G13 Lonicera japonica HOM05D003511 ORTHO05D004403 5.3e-19 99.4 57 78.9
CSS0035504 Camellia sinensis var. sinensis HOM05D003511 ORTHO05D004403 6.9e-19 99.0 64 73.4
CiPaw.05G013200 Carya illinoinensis HOM05D003511 ORTHO05D004403 6.9e-19 99.0 81 60.5
Sabra16G0187700 Salix brachista HOM05D003511 ORTHO05D004403 6.9e-19 99.0 77 61.0
Ciclev10027838m.g Citrus clementina HOM05D003511 ORTHO05D004403 9.1e-19 98.6 61 70.5
Lj5g0008514 Lotus japonicus HOM05D003511 ORTHO05D004403 9.1e-19 98.6 81 55.6
Manes.10G075700 Manihot esculenta HOM05D003511 ORTHO05D004403 9.1e-19 98.6 81 58.0
Medtr1g107135 Medicago truncatula HOM05D003511 ORTHO05D004403 9.1e-19 98.6 77 59.7
AUR62039057 Chenopodium quinoa HOM05D003511 ORTHO05D004403 1.2e-18 98.2 81 56.8
Gohir.D12G021900 Gossypium hirsutum HOM05D003511 ORTHO05D004403 1.2e-18 98.2 57 73.7
Gorai.008G022200 Gossypium raimondii HOM05D003511 ORTHO05D004403 1.2e-18 98.2 57 73.7
CSS0003612 Camellia sinensis var. sinensis HOM05D003511 ORTHO05D004403 1.5e-18 97.8 78 64.1
CSS0042293 Camellia sinensis var. sinensis HOM05D003511 ORTHO05D004403 1.5e-18 97.8 78 64.1
AUR62010329 Chenopodium quinoa HOM05D003511 ORTHO05D004403 1.5e-18 97.8 81 55.6
QL11p032687 Quercus lobata HOM05D003511 ORTHO05D004403 1.5e-18 97.8 81 59.3
Aa31LG2G16810 Aethionema arabicum HOM05D003511 ORTHO05D004403 2.0e-18 97.4 81 58.0
ECA234G0109 Erigeron canadensis HOM05D003511 ORTHO05D004403 2.0e-18 97.4 81 58.0
MD10G1099400 Malus domestica HOM05D003511 ORTHO05D004403 2.0e-18 97.4 52 78.8
Potri.009G093500 Populus trichocarpa HOM05D003511 ORTHO05D004403 2.0e-18 97.4 61 67.2
PGR142G1515 Punica granatum HOM05D003511 ORTHO05D004403 2.0e-18 97.4 77 59.7
SEGI_24031 Sequoiadendron giganteum HOM05D003511 ORTHO05D004403 3.4e-18 96.7 72 59.7
TPR.G19062 Trifolium pratense HOM05D003511 ORTHO05D004403 4.5e-18 96.3 77 58.4
Aqoxy6G02835 Aquilegia oxysepala HOM05D003511 ORTHO05D004403 7.7e-18 95.5 71 62.0
Cfa004604 Carpinus fangiana HOM05D003511 ORTHO05D004403 7.7e-18 95.5 81 56.8
HanXRQChr10g0296941 Helianthus annuus HOM05D003511 ORTHO05D004403 7.7e-18 95.5 81 56.8
Phvul.007G041400 Phaseolus vulgaris HOM05D003511 ORTHO05D004403 7.7e-18 95.5 81 54.3
THA.LOC104819550 Tarenaya hassleriana HOM05D003511 ORTHO05D004403 7.7e-18 95.5 81 58.0
Atru.chr5.2453 Acer truncatum HOM05D003511 ORTHO05D004403 1.0e-17 95.1 61 65.6
Gohir.A12G021350 Gossypium hirsutum HOM05D003511 ORTHO05D004403 1.0e-17 95.1 71 62.0
Medtr4g127370 Medicago truncatula HOM05D003511 ORTHO05D004403 1.0e-17 95.1 77 57.1
HPP92_006064 Vanilla planifolia HOM05D003511 ORTHO05D004403 1.0e-17 95.1 76 60.5
Atru.chr5.2454 Acer truncatum HOM05D003511 ORTHO05D004403 1.3e-17 94.7 77 59.7
Glyma.20G130366 Glycine max HOM05D003511 ORTHO05D004403 1.3e-17 94.7 71 62.0
SEGI_38974 Sequoiadendron giganteum HOM05D003511 ORTHO05D004403 1.3e-17 94.7 72 59.7
Cc02_g19400 Coffea canephora HOM05D003511 ORTHO05D004403 1.7e-17 94.4 61 65.6
EL10Ac9g22257 Beta vulgaris HOM05D003511 ORTHO05D004403 2.2e-17 94.0 72 58.3
Ca_11061_v3 Cicer arietinum L. HOM05D003511 ORTHO05D004403 2.9e-17 93.6 77 57.1
DCAR_029092 Daucus carota HOM05D003511 ORTHO05D004403 2.9e-17 93.6 77 57.1
Glyma.10G260900 Glycine max HOM05D003511 ORTHO05D004403 2.9e-17 93.6 77 58.4
VMungo0720G0159 Vigna mungo HOM05D003511 ORTHO05D004403 3.8e-17 93.2 81 55.6
AL7G17030 Arabidopsis lyrata HOM05D003511 ORTHO05D004403 5.0e-17 92.8 81 54.3
Sabra16G0187500 Salix brachista HOM05D003511 ORTHO05D004403 5.0e-17 92.8 77 55.8
SalBow6G6056 Salvia bowleyana HOM05D003511 ORTHO05D004403 5.0e-17 92.8 71 60.6
Hund00157 Selenicereus undatus HOM05D003511 ORTHO05D004403 5.0e-17 92.8 77 57.1
Potri.001G298900 Populus trichocarpa HOM05D003511 ORTHO05D004403 6.5e-17 92.4 77 55.8
TPR.G19061 Trifolium pratense HOM05D003511 ORTHO05D004403 6.5e-17 92.4 77 54.5
VMungo1215G0806 Vigna mungo HOM05D003511 ORTHO05D004403 6.5e-17 92.4 83 53.0
Eucgr.I01092 Eucalyptus grandis HOM05D003511 ORTHO05D004403 8.5e-17 92.0 77 59.7
Os10g0339600 Oryza sativa ssp. japonica HOM05D003511 ORTHO05D004403 8.5e-17 92.0 62 64.5
Phvul.002G053000 Phaseolus vulgaris HOM05D003511 ORTHO05D004403 8.5e-17 92.0 83 53.0
CARHR242530 Cardamine hirsuta HOM05D003511 ORTHO05D004403 1.1e-16 91.7 81 54.3
AUR62039058 Chenopodium quinoa HOM05D003511 ORTHO05D004403 1.1e-16 91.7 77 55.8
Os10g0339290 Oryza sativa ssp. japonica HOM05D003511 ORTHO05D004403 1.1e-16 91.7 61 62.3
arahy.Tifrunner.gnm1.ann1.LFSR1E Arachis hypogaea HOM05D003511 ORTHO05D004403 1.4e-16 91.3 77 57.1
CsaV3_3G018140 Cucumis sativus L. HOM05D003511 ORTHO05D004403 1.4e-16 91.3 61 65.6
Lalb_Chr06g0165351 Lupinus albus HOM05D003511 ORTHO05D004403 1.4e-16 91.3 81 53.1
Peaxi162Scf00016g02427 Petunia axillaris HOM05D003511 ORTHO05D004403 1.4e-16 91.3 57 70.2
AT4G34260 Arabidopsis thaliana HOM05D003511 ORTHO05D004403 1.9e-16 90.9 81 54.3
AUR62010328 Chenopodium quinoa HOM05D003511 ORTHO05D004403 1.9e-16 90.9 77 54.5
Sp7g32040 Schrenkiella parvula HOM05D003511 ORTHO05D004403 1.9e-16 90.9 81 53.1
Zm00001eb027590 Zea mays HOM05D003511 ORTHO05D004403 1.9e-16 90.9 56 64.3
Eucgr.I01091 Eucalyptus grandis HOM05D003511 ORTHO05D004403 2.5e-16 90.5 52 75.0
Thhalv10024398m.g Eutrema salsugineum HOM05D003511 ORTHO05D004403 2.5e-16 90.5 81 51.9
Psat6g217200 Pisum sativum HOM05D003511 ORTHO05D004403 2.5e-16 90.5 56 69.6
PGR142G0041 Punica granatum HOM05D003511 ORTHO05D004403 2.5e-16 90.5 82 51.2
BcaNung04164 Brassica carinata HOM05D003511 ORTHO05D004403 3.2e-16 90.1 81 53.1
BcaNung04986 Brassica carinata HOM05D003511 ORTHO05D004403 3.2e-16 90.1 81 53.1
A01p04170 Brassica napus HOM05D003511 ORTHO05D004403 3.2e-16 90.1 81 53.1
C01p04540 Brassica napus HOM05D003511 ORTHO05D004403 3.2e-16 90.1 81 53.1
BolC1t00439H Brassica oleracea HOM05D003511 ORTHO05D004403 3.2e-16 90.1 81 53.1
BraA01t00406Z Brassica rapa HOM05D003511 ORTHO05D004403 3.2e-16 90.1 81 53.1
Carub.0007s0611 Capsella rubella HOM05D003511 ORTHO05D004403 3.2e-16 90.1 81 53.1
Glyma.20G130432 Glycine max HOM05D003511 ORTHO05D004403 3.2e-16 90.1 77 55.8
Hund06308 Selenicereus undatus HOM05D003511 ORTHO05D004403 3.2e-16 90.1 77 55.8
MSTRG.20193 Avicennia marina HOM05D003511 ORTHO05D004403 5.5e-16 89.4 77 58.4
Glyma.01G243600 Glycine max HOM05D003511 ORTHO05D004403 7.2e-16 89.0 81 51.9
Sc08g0001330 Simmondsia chinensis HOM05D003511 ORTHO05D004403 9.4e-16 88.6 56 69.6
ClCG05G010350 Citrullus lanatus HOM05D003511 ORTHO05D004403 1.2e-15 88.2 57 66.7
SMO116G0225 Selaginella moellendorffii HOM05D003511 ORTHO05D004403 1.2e-15 88.2 61 57.4
PSO541G1166 Papaver somniferum HOM05D003511 ORTHO05D004403 1.6e-15 87.8 81 53.1
Sabra09G0072100 Salix brachista HOM05D003511 ORTHO05D004403 2.7e-15 87.0 73 53.4
Peaxi162Scf00152g00326 Petunia axillaris HOM05D003511 ORTHO05D004403 4.7e-15 86.3 72 56.9
Mapoly0115s0027 Marchantia polymorpha HOM05D003511 ORTHO05D004403 1.0e-14 85.1 71 54.9
Sed0017826 Sechium edule HOM05D003511 ORTHO05D004403 8.8e-14 82.0 61 55.7
Pp3c19_10350 Physcomitrium patens HOM05D003511 ORTHO05D004403 1.3e-12 78.2 84 44.0
Atru.chr5.2448 Acer truncatum HOM05D003511 ORTHO05D004403 1.2e-07 61.6 38 63.2


User provided reference genes

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