Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR365G0572 Trochodendron aralioides HOM05D004038 ORTHO05D004619 0.0e+00 1289.6 652 100.0
TAR636G2134 Trochodendron aralioides HOM05D004038 ORTHO05D004619 0.0e+00 1080.1 622 88.9
GSVIVG01038267001 Vitis vinifera HOM05D004038 ORTHO05D004619 9.5e-305 1049.7 627 85.5
MBI07_g27881_MAGBIO Magnolia biondii HOM05D004038 ORTHO05D004619 3.4e-302 1041.2 627 84.4
Dinv24739 Davidia involucrata HOM05D004038 ORTHO05D004619 8.3e-301 1036.6 628 84.9
MBI10_g31866_MAGBIO Magnolia biondii HOM05D004038 ORTHO05D004619 6.2e-296 1020.4 630 83.8
Manes.01G009451 Manihot esculenta HOM05D004038 ORTHO05D004619 1.4e-295 1019.2 624 82.7
Cfa008534 Carpinus fangiana HOM05D004038 ORTHO05D004619 3.1e-295 1018.1 625 82.7
QL10p064923 Quercus lobata HOM05D004038 ORTHO05D004619 4.9e-293 1010.7 607 84.0
Haze_11105 Corylus avellana HOM05D004038 ORTHO05D004619 9.2e-292 1006.5 624 81.9
Thecc.05G000500 Theobroma cacao HOM05D004038 ORTHO05D004619 9.2e-292 1006.5 624 81.7
Dinv33253 Davidia involucrata HOM05D004038 ORTHO05D004619 7.8e-291 1003.4 603 84.1
Prupe.7G271200 Prunus persica HOM05D004038 ORTHO05D004619 1.0e-290 1003.0 624 81.4
CiPaw.01G203200 Carya illinoinensis HOM05D004038 ORTHO05D004619 1.5e-289 999.2 603 83.7
Ciclev10019310m.g Citrus clementina HOM05D004038 ORTHO05D004619 5.6e-289 997.3 621 81.0
CiPaw.02G125700 Carya illinoinensis HOM05D004038 ORTHO05D004619 8.1e-288 993.4 601 83.7
Peaxi162Scf01205g00162 Petunia axillaris HOM05D004038 ORTHO05D004619 8.1e-288 993.4 628 80.9
Actinidia18385 Actinidia chinensis HOM05D004038 ORTHO05D004619 2.4e-287 991.9 622 80.5
Cpa.g.sc9.239 Carica papaya HOM05D004038 ORTHO05D004619 4.0e-287 991.1 614 81.9
Duzib093G1419 Durio zibethinus HOM05D004038 ORTHO05D004619 5.2e-287 990.7 625 80.3
Gohir.D13G095500 Gossypium hirsutum HOM05D004038 ORTHO05D004619 4.4e-286 987.6 625 80.0
COL.COLO4_14407 Corchorus olitorius HOM05D004038 ORTHO05D004619 5.8e-286 987.3 596 83.2
Gorai.001G247600 Gossypium raimondii HOM05D004038 ORTHO05D004619 9.9e-286 986.5 625 79.8
Atru.chr3.1959 Acer truncatum HOM05D004038 ORTHO05D004619 1.7e-285 985.7 606 81.8
Gohir.A13G079100 Gossypium hirsutum HOM05D004038 ORTHO05D004619 1.7e-285 985.7 625 79.8
Hma1.2p1_0513F.1_g169760 Hydrangea macrophylla HOM05D004038 ORTHO05D004619 1.1e-284 983.0 634 81.5
Nitab4.5_0000348g0080 Nicotiana tabacum HOM05D004038 ORTHO05D004619 1.9e-284 982.2 621 80.4
MD15G1142000 Malus domestica HOM05D004038 ORTHO05D004619 2.4e-284 981.9 618 80.1
Aqoxy2G04186 Aquilegia oxysepala HOM05D004038 ORTHO05D004619 3.2e-284 981.5 631 80.7
RcHm_v2.0_Chr2g0084351 Rosa chinensis HOM05D004038 ORTHO05D004619 5.4e-284 980.7 609 81.9
Duzib106G0840 Durio zibethinus HOM05D004038 ORTHO05D004619 9.3e-284 979.9 625 79.5
Potri.007G146500 Populus trichocarpa HOM05D004038 ORTHO05D004619 3.5e-283 978.0 625 79.8
FAN28G1790 Fragaria x ananassa HOM05D004038 ORTHO05D004619 7.8e-283 976.9 605 81.3
FvH4_1g00080 Fragaria vesca HOM05D004038 ORTHO05D004619 1.1e-281 973.0 605 81.0
Potri.017G001300 Populus trichocarpa HOM05D004038 ORTHO05D004619 3.3e-281 971.5 620 80.6
PSO170G2946 Papaver somniferum HOM05D004038 ORTHO05D004619 2.8e-280 968.4 633 80.7
Sabra07G0114900 Salix brachista HOM05D004038 ORTHO05D004619 6.2e-280 967.2 620 79.4
Oeu061885.1 Olea europaea HOM05D004038 ORTHO05D004619 1.4e-279 966.1 636 79.2
vmacro00732 Vaccinium macrocarpon HOM05D004038 ORTHO05D004619 2.4e-279 965.3 625 80.2
Lj6A289T17 Lonicera japonica HOM05D004038 ORTHO05D004619 3.1e-279 964.9 633 80.3
PGSC0003DMG400013719 Solanum tuberosum HOM05D004038 ORTHO05D004619 3.1e-279 964.9 625 78.9
FAN26G0143 Fragaria x ananassa HOM05D004038 ORTHO05D004619 4.0e-279 964.5 598 82.1
PSO357G0424 Papaver somniferum HOM05D004038 ORTHO05D004619 9.0e-279 963.4 633 80.3
Solyc08g015780.3 Solanum lycopersicum HOM05D004038 ORTHO05D004619 7.6e-278 960.3 627 78.6
CAN.G68.3 Capsicum annuum HOM05D004038 ORTHO05D004619 9.9e-278 959.9 627 78.8
Rhsim09G0001600 Rhododendron simsii HOM05D004038 ORTHO05D004619 1.7e-277 959.1 625 79.5
Sopen08g005950 Solanum pennellii HOM05D004038 ORTHO05D004619 8.4e-277 956.8 627 78.5
Phvul.003G074400 Phaseolus vulgaris HOM05D004038 ORTHO05D004619 5.4e-276 954.1 609 79.5
Nn7g37426 Nelumbo nucifera HOM05D004038 ORTHO05D004619 1.0e-274 949.9 558 86.6
Nitab4.5_0012258g0010 Nicotiana tabacum HOM05D004038 ORTHO05D004619 1.7e-274 949.1 621 78.4
TWI63G0698 Tripterygium wilfordii HOM05D004038 ORTHO05D004619 3.0e-274 948.3 625 77.9
ClCG08G010220 Citrullus lanatus HOM05D004038 ORTHO05D004619 5.1e-274 947.6 626 77.5
Migut.N03013 Erythranthe guttata HOM05D004038 ORTHO05D004619 1.1e-273 946.4 635 77.5
PGSC0003DMG402006465 Solanum tuberosum HOM05D004038 ORTHO05D004619 1.9e-273 945.7 614 79.8
MELO3C011438.2 Cucumis melo HOM05D004038 ORTHO05D004619 9.6e-273 943.3 620 77.9
VMungo1215G2173 Vigna mungo HOM05D004038 ORTHO05D004619 1.6e-272 942.6 609 78.5
Glyma.17G000500 Glycine max HOM05D004038 ORTHO05D004619 2.1e-272 942.2 609 79.1
Migut.O00491 Erythranthe guttata HOM05D004038 ORTHO05D004619 2.8e-272 941.8 617 79.1
Glyma.07G273900 Glycine max HOM05D004038 ORTHO05D004619 2.8e-272 941.8 609 78.7
CsaV3_6G032420 Cucumis sativus L. HOM05D004038 ORTHO05D004619 1.8e-271 939.1 620 77.6
Eucgr.A00409 Eucalyptus grandis HOM05D004038 ORTHO05D004619 3.1e-271 938.3 599 79.1
Lj4g0009662 Lotus japonicus HOM05D004038 ORTHO05D004619 5.3e-271 937.6 607 78.3
MSTRG.22058 Avicennia marina HOM05D004038 ORTHO05D004619 3.4e-270 934.9 630 77.6
Sc19g0002460 Simmondsia chinensis HOM05D004038 ORTHO05D004619 1.1e-268 929.9 621 76.8
Solyc12g017540.2 Solanum lycopersicum HOM05D004038 ORTHO05D004619 3.2e-268 928.3 600 79.7
MSTRG.24543 Avicennia marina HOM05D004038 ORTHO05D004619 7.1e-268 927.2 615 77.9
Nitab4.5_0008814g0010 Nicotiana tabacum HOM05D004038 ORTHO05D004619 3.0e-266 921.8 575 80.7
Sopen12g008310 Solanum pennellii HOM05D004038 ORTHO05D004619 8.7e-266 920.2 601 79.4
HanXRQChr01g0023591 Helianthus annuus HOM05D004038 ORTHO05D004619 1.5e-265 919.5 621 76.8
DCAR_023794 Daucus carota HOM05D004038 ORTHO05D004619 5.6e-265 917.5 595 79.0
Nitab4.5_0000219g0020 Nicotiana tabacum HOM05D004038 ORTHO05D004619 7.4e-265 917.1 575 81.2
Sed0003085 Sechium edule HOM05D004038 ORTHO05D004619 8.1e-264 913.7 620 75.6
Ca_13541_v3 Cicer arietinum L. HOM05D004038 ORTHO05D004619 1.8e-263 912.5 604 76.7
Medtr4g134960 Medicago truncatula HOM05D004038 ORTHO05D004619 2.5e-260 902.1 593 77.6
AUR62023688 Chenopodium quinoa HOM05D004038 ORTHO05D004619 3.5e-259 898.3 609 75.7
THA.LOC104802352 Tarenaya hassleriana HOM05D004038 ORTHO05D004619 3.0e-258 895.2 612 75.3
Hund12302 Selenicereus undatus HOM05D004038 ORTHO05D004619 4.3e-257 891.3 611 74.6
Peaxi162Scf00057g00179 Petunia axillaris HOM05D004038 ORTHO05D004619 1.1e-255 886.7 565 79.3
MD02G1000800 Malus domestica HOM05D004038 ORTHO05D004619 7.6e-254 880.6 619 74.3
Psat4g001200 Pisum sativum HOM05D004038 ORTHO05D004619 2.9e-253 878.6 581 77.1
unitig_27.g25138 Utricularia gibba HOM05D004038 ORTHO05D004619 1.4e-252 876.3 613 75.2
CANSAT56G2502 Cannabis sativa HOM05D004038 ORTHO05D004619 2.5e-252 875.5 526 83.3
Aa31LG1G25740 Aethionema arabicum HOM05D004038 ORTHO05D004619 7.1e-252 874.0 609 74.7
Lalb_Chr13g0304471 Lupinus albus HOM05D004038 ORTHO05D004619 1.6e-251 872.8 590 76.4
Thhalv10001361m.g Eutrema salsugineum HOM05D004038 ORTHO05D004619 8.7e-250 867.1 611 73.3
EL10Ac3g06184 Beta vulgaris HOM05D004038 ORTHO05D004619 3.7e-248 861.7 679 67.3
Ah.07g203340 Amaranthus hybridus HOM05D004038 ORTHO05D004619 4.8e-248 861.3 609 72.9
SalBow3G0041 Salvia bowleyana HOM05D004038 ORTHO05D004619 4.1e-247 858.2 594 75.1
Sp4g26170 Schrenkiella parvula HOM05D004038 ORTHO05D004619 2.0e-246 855.9 604 74.0
CARHR170240 Cardamine hirsuta HOM05D004038 ORTHO05D004619 1.0e-245 853.6 624 72.8
Cc03_g15890 Coffea canephora HOM05D004038 ORTHO05D004619 1.7e-245 852.8 590 73.2
BraA09t40655Z Brassica rapa HOM05D004038 ORTHO05D004619 2.9e-245 852.0 603 73.3
BcaC07g40397 Brassica carinata HOM05D004038 ORTHO05D004619 8.5e-245 850.5 608 73.0
Thhalv10005846m.g Eutrema salsugineum HOM05D004038 ORTHO05D004619 1.9e-244 849.4 569 77.2
A09p52260 Brassica napus HOM05D004038 ORTHO05D004619 4.2e-244 848.2 600 73.2
AT3G59910 Arabidopsis thaliana HOM05D004038 ORTHO05D004619 5.5e-244 847.8 610 72.8
Migut.G00797 Erythranthe guttata HOM05D004038 ORTHO05D004619 5.5e-244 847.8 607 73.3
C08p34910 Brassica napus HOM05D004038 ORTHO05D004619 1.2e-243 846.7 603 73.5
AUR62002499 Chenopodium quinoa HOM05D004038 ORTHO05D004619 1.0e-242 843.6 627 70.3
Sp5g03260 Schrenkiella parvula HOM05D004038 ORTHO05D004619 8.8e-242 840.5 610 72.6
AL5G42070 Arabidopsis lyrata HOM05D004038 ORTHO05D004619 1.1e-241 840.1 610 72.1
BcaC07g40545 Brassica carinata HOM05D004038 ORTHO05D004619 2.0e-241 839.3 603 72.8
BolC8t51093H Brassica oleracea HOM05D004038 ORTHO05D004619 2.0e-241 839.3 603 72.8
Aa31LG10G14160 Aethionema arabicum HOM05D004038 ORTHO05D004619 6.3e-240 834.3 622 70.6
Carub.0005s2665 Capsella rubella HOM05D004038 ORTHO05D004619 8.2e-240 833.9 621 71.3
BcaB02g08921 Brassica carinata HOM05D004038 ORTHO05D004619 3.1e-239 832.0 611 70.7
PGR042G1685 Punica granatum HOM05D004038 ORTHO05D004619 3.1e-239 832.0 616 68.8
BraA05t19406Z Brassica rapa HOM05D004038 ORTHO05D004619 1.0e-237 827.0 579 73.9
A05p04210 Brassica napus HOM05D004038 ORTHO05D004619 6.5e-237 824.3 619 70.1
arahy.Tifrunner.gnm1.ann1.7FI9ND Arachis hypogaea HOM05D004038 ORTHO05D004619 5.5e-236 821.2 561 74.2
arahy.Tifrunner.gnm1.ann1.BTB9WU Arachis hypogaea HOM05D004038 ORTHO05D004619 3.6e-235 818.5 558 74.4
Rhsim09G0010000 Rhododendron simsii HOM05D004038 ORTHO05D004619 4.7e-235 818.1 624 71.3
AT2G44090 Arabidopsis thaliana HOM05D004038 ORTHO05D004619 6.1e-235 817.8 592 72.6
C04p04970 Brassica napus HOM05D004038 ORTHO05D004619 1.7e-232 809.7 619 69.1
Ah.13g073130 Amaranthus hybridus HOM05D004038 ORTHO05D004619 8.2e-232 807.4 606 70.0
BcaC02g12341 Brassica carinata HOM05D004038 ORTHO05D004619 1.8e-231 806.2 625 68.8
SGA_v2.0_scaffold19G08904 Striga asiatica HOM05D004038 ORTHO05D004619 1.8e-231 806.2 542 78.4
BolC4t22128H Brassica oleracea HOM05D004038 ORTHO05D004619 9.1e-231 803.9 615 69.1
Lsat_1_v5_gn_1_77161 Lactuca sativa HOM05D004038 ORTHO05D004619 2.9e-229 798.9 618 70.6
CDE08G0097 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 2.7e-227 792.3 594 70.4
TPR.G5970 Trifolium pratense HOM05D004038 ORTHO05D004619 2.6e-225 785.8 559 73.2
ATR0743G108 Amborella trichopoda HOM05D004038 ORTHO05D004619 2.2e-224 782.7 629 66.6
AL4G42970 Arabidopsis lyrata HOM05D004038 ORTHO05D004619 2.8e-224 782.3 601 69.2
SEGI_02142 Sequoiadendron giganteum HOM05D004038 ORTHO05D004619 6.3e-224 781.2 637 66.6
CDE09G0082 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 2.4e-223 779.2 588 68.2
HPP92_001964 Vanilla planifolia HOM05D004038 ORTHO05D004619 1.5e-217 760.0 625 65.1
BcaC02g07135 Brassica carinata HOM05D004038 ORTHO05D004619 1.8e-215 753.1 522 72.8
Os11g0246900 Oryza sativa ssp. japonica HOM05D004038 ORTHO05D004619 2.4e-215 752.7 526 71.3
Zm00001eb168270 Zea mays HOM05D004038 ORTHO05D004619 3.5e-214 748.8 610 64.4
ATR0225G045 Amborella trichopoda HOM05D004038 ORTHO05D004619 1.1e-212 743.8 519 73.6
SalBow6G2055 Salvia bowleyana HOM05D004038 ORTHO05D004619 3.0e-210 735.7 414 87.4
Cc03_g15910 Coffea canephora HOM05D004038 ORTHO05D004619 2.0e-209 733.0 419 85.9
ECA248G0282 Erigeron canadensis HOM05D004038 ORTHO05D004619 2.0e-209 733.0 595 68.6
HPP92_004656 Vanilla planifolia HOM05D004038 ORTHO05D004619 9.8e-209 730.7 636 64.0
FAN23G2340 Fragaria x ananassa HOM05D004038 ORTHO05D004619 9.1e-207 724.2 412 86.7
Mapoly0053s0086 Marchantia polymorpha HOM05D004038 ORTHO05D004619 9.1e-207 724.2 559 67.6
Oeu050303.2 Olea europaea HOM05D004038 ORTHO05D004619 6.6e-205 718.0 415 86.5
Pp3c24_10000 Physcomitrium patens HOM05D004038 ORTHO05D004619 3.3e-204 715.7 535 69.0
Pp3c20_17330 Physcomitrium patens HOM05D004038 ORTHO05D004619 3.6e-203 712.2 527 69.3
Pp3c23_11480 Physcomitrium patens HOM05D004038 ORTHO05D004619 8.0e-203 711.1 643 60.7
Pp3c23_5610 Physcomitrium patens HOM05D004038 ORTHO05D004619 2.3e-194 682.9 527 66.8
AagrBONN_evm.TU.Sc2ySwM_344.984 Anthoceros agrestis HOM05D004038 ORTHO05D004619 6.8e-194 681.4 512 69.5
SMO361G0247 Selaginella moellendorffii HOM05D004038 ORTHO05D004619 5.4e-191 671.8 495 68.9
Actinidia34559 Actinidia chinensis HOM05D004038 ORTHO05D004619 1.0e-189 667.5 477 75.1
SMO266G0055 Selaginella moellendorffii HOM05D004038 ORTHO05D004619 5.6e-188 661.8 528 65.2
Zm00001eb244150 Zea mays HOM05D004038 ORTHO05D004619 4.7e-171 605.5 573 55.1
Nn1g09401 Nelumbo nucifera HOM05D004038 ORTHO05D004619 3.2e-167 592.8 358 84.1
CARHR139240 Cardamine hirsuta HOM05D004038 ORTHO05D004619 5.8e-161 572.0 381 75.6
Os02g0562400 Oryza sativa ssp. japonica HOM05D004038 ORTHO05D004619 1.1e-159 567.8 479 60.3
MD01G1124800 Malus domestica HOM05D004038 ORTHO05D004619 5.6e-156 555.4 524 58.6
FAN23G0195 Fragaria x ananassa HOM05D004038 ORTHO05D004619 1.3e-144 517.7 340 78.8
CDE02G2909 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 1.1e-138 498.0 465 58.9
Carub.0004s2664 Capsella rubella HOM05D004038 ORTHO05D004619 2.3e-109 400.6 239 82.4
PGSC0003DMG401006465 Solanum tuberosum HOM05D004038 ORTHO05D004619 1.8e-77 294.7 155 93.5
BcaB02g10668 Brassica carinata HOM05D004038 ORTHO05D004619 1.3e-67 261.9 145 91.0
C04p70890 Brassica napus HOM05D000190 ORTHO05D000113 1.3e-48 198.7 164 60.4
BolC4t28590H Brassica oleracea HOM05D000190 ORTHO05D000113 3.3e-47 194.1 164 57.9
A04p33200 Brassica napus HOM05D000190 ORTHO05D000113 3.1e-45 187.6 161 57.8
BraA04t18779Z Brassica rapa HOM05D000190 ORTHO05D000113 2.0e-44 184.9 161 57.1
Oeu038224.1 Olea europaea HOM05D003383 ORTHO05D003890 9.3e-42 176.0 123 71.5
FvH4_6g21450 Fragaria vesca HOM05D004038 ORTHO05D004619 8.7e-40 169.5 98 85.7
ATR1120G077 Amborella trichopoda HOM05D004884 ORTHO05D005873 2.9e-27 127.9 95 67.4
ATR0115G008 Amborella trichopoda HOM05D004038 ORTHO05D004619 1.0e-24 119.4 95 62.1
Oeu023156.1 Olea europaea HOM05D004038 ORTHO05D004619 5.1e-24 117.1 115 57.4
Pp3c1_34260 Physcomitrium patens HOM05D004038 ORTHO05D004619 6.3e-22 110.2 286 28.7
Pp3c14_7650 Physcomitrium patens HOM05D004038 ORTHO05D004619 1.2e-20 105.9 276 29.0
FvH4_5g21451 Fragaria vesca HOM05D004038 ORTHO05D004619 5.9e-20 103.6 60 86.7
Pp3c10_11360 Physcomitrium patens HOM05D004038 ORTHO05D004619 3.2e-18 97.8 190 33.2
CBR_g40501 Chara braunii HOM05D004038 ORTHO05D004619 4.6e-17 94.0 126 38.9
SGA_v2.0_scaffold158G37520 Striga asiatica HOM05D004038 ORTHO05D004619 3.0e-16 91.3 86 55.8
SGA_v2.0_scaffold18G08543 Striga asiatica HOM05D004038 ORTHO05D004619 6.7e-16 90.1 100 55.0
SGA_v2.0_scaffold10G05092 Striga asiatica HOM05D020555 ORTHO05D004619 1.9e-15 88.6 70 72.9
Pp3c1_7290 Physcomitrium patens HOM05D004038 ORTHO05D004619 5.7e-15 87.0 188 34.0
ATR0665G114 Amborella trichopoda HOM05D004038 ORTHO05D004619 8.5e-11 73.2 66 62.1
SHI01462 Sapria himalayana HOM05D004038 ORTHO05D004619 2.3e-08 65.1 56 50.0
ATR0624G069 Amborella trichopoda HOM05D004038 ORTHO05D004619 2.6e-07 61.6 73 46.6


User provided reference genes

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