Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR365G0557 Trochodendron aralioides HOM05D006492 ORTHO05D008432 0.0e+00 1958.0 1016 100.0
TAR365G0379 Trochodendron aralioides HOM05D006492 ORTHO05D008432 0.0e+00 1909.8 1016 97.9
Dinv38285 Davidia involucrata HOM05D006492 ORTHO05D008432 0.0e+00 1280.4 951 69.4
Nn1g03104 Nelumbo nucifera HOM05D006492 ORTHO05D008432 0.0e+00 1237.2 1015 64.8
Actinidia25080 Actinidia chinensis HOM05D006492 ORTHO05D008432 0.0e+00 1224.2 1015 64.4
GSVIVG01029042001 Vitis vinifera HOM05D006492 ORTHO05D008432 0.0e+00 1222.2 1032 62.7
Haze_11549 Corylus avellana HOM05D006492 ORTHO05D008432 0.0e+00 1220.7 1016 63.8
QL05p063769 Quercus lobata HOM05D006492 ORTHO05D008432 0.0e+00 1208.7 1063 61.3
Potri.003G175300 Populus trichocarpa HOM05D006492 ORTHO05D008432 0.0e+00 1195.3 1015 62.2
Cfa014875 Carpinus fangiana HOM05D006492 ORTHO05D008432 0.0e+00 1190.6 968 64.5
Thecc.04G212600 Theobroma cacao HOM05D006492 ORTHO05D008432 0.0e+00 1179.1 1012 60.5
Prupe.1G060300 Prunus persica HOM05D006492 ORTHO05D008432 0.0e+00 1166.4 1023 61.9
Potri.001G053000 Populus trichocarpa HOM05D006492 ORTHO05D008432 0.0e+00 1161.4 1013 61.0
MBI10_g16832_MAGBIO Magnolia biondii HOM05D006492 ORTHO05D008432 0.0e+00 1142.9 973 63.1
MD00G1101100 Malus domestica HOM05D006492 ORTHO05D008432 0.0e+00 1125.2 1024 60.4
vmacro00516 Vaccinium macrocarpon HOM05D006492 ORTHO05D008432 0.0e+00 1119.0 1032 59.4
Gorai.006G055600 Gossypium raimondii HOM05D006492 ORTHO05D008432 0.0e+00 1108.2 1018 56.7
Gohir.D09G053008 Gossypium hirsutum HOM05D006492 ORTHO05D008432 0.0e+00 1107.4 1018 56.8
Aqoxy2G03837 Aquilegia oxysepala HOM05D006492 ORTHO05D008432 0.0e+00 1103.6 1016 60.0
Manes.15G049000 Manihot esculenta HOM05D006492 ORTHO05D008432 0.0e+00 1102.4 1009 57.4
Sabra01G0037500 Salix brachista HOM05D006492 ORTHO05D008432 0.0e+00 1098.2 1014 58.9
CSS0015325 Camellia sinensis var. sinensis HOM05D006492 ORTHO05D008432 0.0e+00 1092.0 890 65.3
RcHm_v2.0_Chr4g0396881 Rosa chinensis HOM05D006492 ORTHO05D008432 0.0e+00 1087.8 1024 58.3
MSTRG.24638 Avicennia marina HOM05D006492 ORTHO05D008432 0.0e+00 1083.2 1017 57.1
COL.COLO4_34090 Corchorus olitorius HOM05D006492 ORTHO05D008432 0.0e+00 1082.4 1015 56.8
FAN12G2087 Fragaria x ananassa HOM05D006492 ORTHO05D008432 0.0e+00 1077.0 1024 56.9
FAN07G0933 Fragaria x ananassa HOM05D006492 ORTHO05D008432 0.0e+00 1075.1 1035 56.8
Ciclev10004244m.g Citrus clementina HOM05D006492 ORTHO05D008432 4.9e-311 1071.2 1016 56.7
FAN22G2187 Fragaria x ananassa HOM05D006492 ORTHO05D008432 2.4e-310 1068.9 1024 56.9
Duzib212G0418 Durio zibethinus HOM05D006492 ORTHO05D008432 4.9e-308 1061.2 977 57.1
TWI09G1643 Tripterygium wilfordii HOM05D006492 ORTHO05D008432 2.1e-306 1055.8 1059 55.1
CiPaw.01G204100 Carya illinoinensis HOM05D006492 ORTHO05D008432 8.1e-303 1043.9 911 62.2
CANSAT78G0108 Cannabis sativa HOM05D006492 ORTHO05D008432 4.2e-299 1031.6 1027 54.7
Rhsim09G0049200 Rhododendron simsii HOM05D006492 ORTHO05D008432 3.9e-297 1025.0 1078 54.5
Sopen09g034300 Solanum pennellii HOM05D006492 ORTHO05D008432 8.7e-297 1023.8 1035 54.0
SGA_v2.0_scaffold2G00843 Striga asiatica HOM05D006492 ORTHO05D008432 4.8e-295 1018.1 1015 54.6
Cc03_g07180 Coffea canephora HOM05D006492 ORTHO05D008432 8.4e-292 1007.3 1028 54.1
Sc14g0004710 Simmondsia chinensis HOM05D006492 ORTHO05D008432 1.3e-289 1000.0 1016 52.2
Nitab4.5_0012325g0010 Nicotiana tabacum HOM05D006492 ORTHO05D008432 5.1e-289 998.0 1064 51.8
Phvul.007G134600 Phaseolus vulgaris HOM05D006492 ORTHO05D008432 6.7e-289 997.7 1018 52.7
ECA233G5226 Erigeron canadensis HOM05D006492 ORTHO05D008432 8.7e-289 997.3 1006 54.8
Migut.N00332 Erythranthe guttata HOM05D006492 ORTHO05D008432 3.3e-288 995.3 979 55.9
Nitab4.5_0000493g0030 Nicotiana tabacum HOM05D006492 ORTHO05D008432 2.1e-287 992.6 997 53.9
FAN17G1964 Fragaria x ananassa HOM05D006492 ORTHO05D008432 1.1e-286 990.3 1050 53.8
arahy.Tifrunner.gnm1.ann1.TP3X9S Arachis hypogaea HOM05D006492 ORTHO05D008432 1.4e-286 989.9 1012 52.5
Glyma.10G192800 Glycine max HOM05D006492 ORTHO05D008432 2.4e-286 989.2 1015 52.7
Hund24849 Selenicereus undatus HOM05D006492 ORTHO05D008432 3.1e-286 988.8 1020 53.0
EL10Ac3g06781 Beta vulgaris HOM05D006492 ORTHO05D008432 4.1e-286 988.4 1026 52.8
PSO017G3024 Papaver somniferum HOM05D006492 ORTHO05D008432 4.2e-283 978.4 1041 55.2
HanXRQChr07g0185861 Helianthus annuus HOM05D006492 ORTHO05D008432 7.2e-283 977.6 1005 53.6
Glyma.20G197700 Glycine max HOM05D006492 ORTHO05D008432 2.7e-282 975.7 966 53.3
PSO063G2396 Papaver somniferum HOM05D006492 ORTHO05D008432 4.6e-282 974.9 1040 54.8
ClCG05G003620 Citrullus lanatus HOM05D006492 ORTHO05D008432 3.9e-281 971.8 1041 50.9
ATR0787G047 Amborella trichopoda HOM05D006492 ORTHO05D008432 4.8e-279 964.9 1032 52.5
Lju414A5T31 Lonicera japonica HOM05D006492 ORTHO05D008432 1.7e-276 956.4 841 61.4
Cpa.g.sc59.86 Carica papaya HOM05D006492 ORTHO05D008432 1.1e-275 953.7 898 56.9
Lj5g0018955 Lotus japonicus HOM05D006492 ORTHO05D008432 1.4e-275 953.4 997 52.5
AUR62035934 Chenopodium quinoa HOM05D006492 ORTHO05D008432 2.0e-272 943.0 1028 50.6
PGR142G2376 Punica granatum HOM05D006492 ORTHO05D008432 5.7e-272 941.4 1020 51.7
CsaV3_3G011330 Cucumis sativus L. HOM05D006492 ORTHO05D008432 1.5e-269 933.3 1039 49.8
Peaxi162Scf00047g01324 Petunia axillaris HOM05D006492 ORTHO05D008432 1.2e-266 923.7 997 51.8
Sed0001454 Sechium edule HOM05D006492 ORTHO05D008432 4.7e-266 921.8 1011 50.2
TPR.G13408 Trifolium pratense HOM05D006492 ORTHO05D008432 1.3e-263 913.7 989 50.1
Medtr1g090050 Medicago truncatula HOM05D006492 ORTHO05D008432 4.8e-263 911.8 990 49.6
Lalb_Chr21g0312661 Lupinus albus HOM05D006492 ORTHO05D008432 1.8e-254 883.2 911 52.4
Psat6g170280 Pisum sativum HOM05D006492 ORTHO05D008432 2.4e-254 882.9 1030 48.0
Ah.04g153340 Amaranthus hybridus HOM05D006492 ORTHO05D008432 7.0e-254 881.3 1015 48.1
THA.LOC104816017 Tarenaya hassleriana HOM05D006492 ORTHO05D008432 1.2e-253 880.6 1006 49.5
Eucgr.H00098 Eucalyptus grandis HOM05D006492 ORTHO05D008432 3.5e-253 879.0 903 54.0
VMungo0720G0701 Vigna mungo HOM05D006492 ORTHO05D008432 3.5e-253 879.0 915 51.8
SalBow3G2597 Salvia bowleyana HOM05D006492 ORTHO05D008432 4.5e-253 878.6 948 52.5
Oeu051651.1 Olea europaea HOM05D006492 ORTHO05D008432 2.1e-250 869.8 780 59.2
Lsat_1_v5_gn_6_62680 Lactuca sativa HOM05D006492 ORTHO05D008432 1.8e-249 866.7 1016 48.7
CAN.G1552.5 Capsicum annuum HOM05D006492 ORTHO05D008432 5.2e-249 865.1 891 52.2
DCAR_002278 Daucus carota HOM05D006492 ORTHO05D008432 2.0e-248 863.2 914 53.2
AT1G04650 Arabidopsis thaliana HOM05D006492 ORTHO05D008432 1.3e-247 860.5 1000 47.9
Sp1g03490 Schrenkiella parvula HOM05D006492 ORTHO05D008432 1.7e-247 860.1 1003 47.9
BolC8t46943H Brassica oleracea HOM05D006492 ORTHO05D008432 2.7e-245 852.8 1010 46.9
BraA08t35581Z Brassica rapa HOM05D006492 ORTHO05D008432 2.7e-245 852.8 1005 46.9
C08p01350 Brassica napus HOM05D006492 ORTHO05D008432 1.0e-244 850.9 1010 46.8
AL1G14360 Arabidopsis lyrata HOM05D006492 ORTHO05D008432 1.3e-244 850.5 1002 46.8
A08p36780 Brassica napus HOM05D006492 ORTHO05D008432 2.2e-244 849.7 1013 46.7
CARHR004030 Cardamine hirsuta HOM05D006492 ORTHO05D008432 5.0e-244 848.6 1000 47.2
Carub.0001s0390 Capsella rubella HOM05D006492 ORTHO05D008432 3.6e-242 842.4 1005 46.5
Thhalv10006668m.g Eutrema salsugineum HOM05D006492 ORTHO05D008432 6.1e-242 841.6 1028 46.3
Ca_10406_v3 Cicer arietinum L. HOM05D006492 ORTHO05D008432 5.0e-236 822.0 932 49.5
unitig_899.g15531 Utricularia gibba HOM05D006492 ORTHO05D008432 5.0e-236 822.0 1018 46.7
A10p03080 Brassica napus HOM05D006492 ORTHO05D008432 1.1e-235 820.8 1007 45.9
CDE04G0311 Ceratophyllum demersum HOM05D006492 ORTHO05D008432 5.6e-219 765.4 840 49.2
Atru.chr4.1802 Acer truncatum HOM05D006492 ORTHO05D008432 9.5e-219 764.6 666 59.2
Aa31LG1G20220 Aethionema arabicum HOM05D006492 ORTHO05D008432 1.4e-214 750.7 973 43.6
FvH4_4g05680 Fragaria vesca HOM05D006492 ORTHO05D008432 1.0e-212 744.6 719 55.9
Zm00001eb003580 Zea mays HOM05D006492 ORTHO05D008432 2.5e-211 740.0 1022 43.2
MELO3C006341.2 Cucumis melo HOM05D006492 ORTHO05D008432 8.9e-209 731.5 825 47.8
BcaC07g36892 Brassica carinata HOM05D006492 ORTHO05D008432 5.4e-206 722.2 911 45.6
vmacro22821 Vaccinium macrocarpon HOM05D006492 ORTHO05D008432 1.5e-200 704.1 949 46.8
Os03g0144000 Oryza sativa ssp. japonica HOM05D006492 ORTHO05D008432 3.2e-198 696.4 1051 41.1
Solyc09g091370.4 Solanum lycopersicum HOM05D006492 ORTHO05D008432 1.6e-197 694.1 678 55.6
SHI00019 Sapria himalayana HOM05D006492 ORTHO05D000009 5.1e-172 609.4 901 41.6
SEGI_21616 Sequoiadendron giganteum HOM05D006492 ORTHO05D008432 1.2e-168 598.2 927 41.1
BraA10t42581Z Brassica rapa HOM05D006492 ORTHO05D008432 2.7e-136 490.7 1016 33.3
HPP92_025559 Vanilla planifolia HOM05D006492 ORTHO05D008432 9.6e-86 322.8 645 35.3
Pp3c16_18660 Physcomitrium patens HOM05D006492 ORTHO05D008432 3.9e-71 274.2 1036 25.4
HPP92_025560 Vanilla planifolia HOM05D006492 ORTHO05D008432 9.3e-65 253.1 326 47.5
arahy.Tifrunner.gnm1.ann1.LCJ3P1 Arachis hypogaea HOM05D006492 ORTHO05D008432 1.3e-63 249.2 271 49.1
SMO117G0361 Selaginella moellendorffii HOM05D006492 ORTHO05D008432 2.5e-57 228.4 741 28.3
Atru.chr4.1801 Acer truncatum HOM05D006492 ORTHO05D008432 4.2e-57 227.6 191 63.4
Lju414A5G29 Lonicera japonica HOM05D006492 ORTHO05D008432 1.4e-39 169.5 144 67.4
Mapoly0061s0085 Marchantia polymorpha HOM05D006492 ORTHO05D008432 1.7e-37 162.5 685 25.4
AagrBONN_evm.TU.Sc2ySwM_117.2272 Anthoceros agrestis HOM05D006492 ORTHO05D008432 5.3e-28 131.0 637 25.4
CBR_g61877 Chara braunii HOM05D006492 ORTHO05D008432 8.8e-23 113.6 832 21.8
C05p02850 Brassica napus HOM05D006492 ORTHO05D008432 8.3e-21 107.1 137 43.8
C05p02840 Brassica napus HOM05D006492 ORTHO05D008432 7.0e-12 77.4 126 37.3
Nitab4.5_0005468g0040 Nicotiana tabacum HOM05D001280 ORTHO05D008432 1.0e-10 73.6 107 41.1
PGSC0003DMG400029639 Solanum tuberosum HOM05D006492 ORTHO05D035178 4.4e-06 58.2 46 63.0
Gohir.D04G085800 Gossypium hirsutum HOM05D017690 ORTHO05D015145 9.8e-06 57.0 54 59.3


User provided reference genes

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