Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR365G0480 Trochodendron aralioides HOM05D008307 ORTHO05D010374 0.0e+00 1460.3 788 100.0
Dinv29844 Davidia involucrata HOM05D008307 ORTHO05D010374 3.6e-133 479.9 888 37.6
Cfa014722 Carpinus fangiana HOM05D008307 ORTHO05D010374 1.2e-120 438.3 904 37.1
Haze_11405 Corylus avellana HOM05D008307 ORTHO05D010374 2.6e-115 420.6 820 37.4
MBI07_g31095_MAGBIO Magnolia biondii HOM05D008307 ORTHO05D010374 2.7e-112 410.6 761 38.2
QL06p018536 Quercus lobata HOM05D008307 ORTHO05D010374 5.1e-111 406.4 807 36.2
Actinidia35796 Actinidia chinensis HOM05D008307 ORTHO05D010374 1.1e-110 405.2 849 34.0
TWI73G0959 Tripterygium wilfordii HOM05D008307 ORTHO05D010374 1.5e-102 378.3 818 35.3
Rhsim04G0177000 Rhododendron simsii HOM05D008307 ORTHO05D010374 5.3e-100 369.8 732 35.9
RcHm_v2.0_Chr4g0393941 Rosa chinensis HOM05D008307 ORTHO05D010374 1.4e-97 361.7 906 33.1
Aqoxy7G00920 Aquilegia oxysepala HOM05D008307 ORTHO05D010374 5.9e-91 339.7 1081 30.8
CSS0044876 Camellia sinensis var. sinensis HOM05D008307 ORTHO05D010374 1.6e-88 331.6 787 33.9
Potri.010G070001 Populus trichocarpa HOM05D008307 ORTHO05D010374 1.0e-87 328.9 808 33.0
MD16G1220900 Malus domestica HOM05D008307 ORTHO05D010374 1.4e-87 328.6 647 38.3
vmacro08510 Vaccinium macrocarpon HOM05D008307 ORTHO05D010374 5.1e-87 326.6 740 33.2
ATR0736G143 Amborella trichopoda HOM05D008307 ORTHO05D010374 5.2e-79 300.1 762 32.4
FvH4_4g03920 Fragaria vesca HOM05D008307 ORTHO05D010374 2.6e-78 297.7 795 31.2
FAN22G1022 Fragaria x ananassa HOM05D000478 ORTHO05D010374 2.4e-76 291.2 791 31.1
DCAR_024261 Daucus carota HOM05D008307 ORTHO05D010374 1.2e-72 278.9 883 28.2
BraA07t28701Z Brassica rapa HOM05D008307 ORTHO05D010374 2.2e-66 258.1 303 45.9
THA.LOC104822237 Tarenaya hassleriana HOM05D008307 ORTHO05D010374 3.8e-66 257.3 819 28.0
AL3G38030 Arabidopsis lyrata HOM05D008307 ORTHO05D010374 5.0e-66 256.9 291 46.4
A07p09070 Brassica napus HOM05D008307 ORTHO05D010374 1.1e-65 255.8 303 45.9
C07p14040 Brassica napus HOM05D008307 ORTHO05D010374 7.2e-65 253.1 303 44.6
BcaC06g35512 Brassica carinata HOM05D008307 ORTHO05D010374 1.6e-64 251.9 303 44.6
BolC7t41901H Brassica oleracea HOM05D008307 ORTHO05D010374 1.6e-64 251.9 303 44.6
CARHR099340 Cardamine hirsuta HOM05D008307 ORTHO05D010374 8.0e-64 249.6 302 44.4
PGSC0003DMG400017215 Solanum tuberosum HOM05D008307 ORTHO05D010374 2.6e-62 244.6 461 33.8
Solyc09g090290.3 Solanum lycopersicum HOM05D008307 ORTHO05D010374 7.5e-62 243.0 311 41.8
Migut.N00284 Erythranthe guttata HOM05D008307 ORTHO05D010374 1.3e-61 242.3 301 42.2
Thhalv10020149m.g Eutrema salsugineum HOM05D008307 ORTHO05D010374 1.3e-61 242.3 709 31.0
Nitab4.5_0000044g0470 Nicotiana tabacum HOM05D008307 ORTHO05D010374 1.1e-60 239.2 670 29.0
Peaxi162Scf00041g00209 Petunia axillaris HOM05D008307 ORTHO05D010374 4.1e-60 237.3 536 31.9
AT3G23370 Arabidopsis thaliana HOM05D008307 ORTHO05D010374 9.1e-60 236.1 292 43.8
DCAR_027325 Daucus carota HOM05D008307 ORTHO05D010374 9.1e-60 236.1 515 35.0
Nitab4.5_0007280g0010 Nicotiana tabacum HOM05D008307 ORTHO05D010374 5.0e-58 230.3 518 31.3
FAN17G2370 Fragaria x ananassa HOM05D000478 ORTHO05D010374 1.1e-57 229.2 717 29.0
Sopen09g033190 Solanum pennellii HOM05D008307 ORTHO05D010374 4.2e-57 227.3 723 28.6
COL.COLO4_15896 Corchorus olitorius HOM05D008307 ORTHO05D010374 2.8e-56 224.6 634 30.8
SEGI_00673 Sequoiadendron giganteum HOM05D008307 ORTHO05D010374 1.8e-55 221.9 360 37.5
CAN.G220.11 Capsicum annuum HOM05D008307 ORTHO05D010374 1.2e-54 219.2 304 39.8
Carub.0003s2363 Capsella rubella HOM05D008307 ORTHO05D010374 4.5e-51 207.2 218 49.1
PGR031G2080 Punica granatum HOM05D008307 ORTHO05D010374 4.7e-48 197.2 219 46.6
SGA_v2.0_scaffold31G12662 Striga asiatica HOM05D008307 ORTHO05D010374 2.0e-46 191.8 306 34.6
Prupe.1G041400 Prunus persica HOM05D008307 ORTHO05D010374 9.8e-46 189.5 805 27.3
FAN12G4262 Fragaria x ananassa HOM05D000478 ORTHO05D010374 4.1e-44 184.1 640 28.0
Gorai.011G175900 Gossypium raimondii HOM05D008307 ORTHO05D010374 2.7e-35 154.8 495 30.9
Cc03_g05700 Coffea canephora HOM05D008307 ORTHO05D010374 1.5e-33 149.1 812 23.9
Thecc.04G258000 Theobroma cacao HOM05D008307 ORTHO05D010374 2.8e-32 144.8 210 39.0
Gohir.D10G155880 Gossypium hirsutum HOM05D008307 ORTHO05D010374 2.3e-31 141.7 502 29.3
Cc03_g05710 Coffea canephora HOM05D008307 ORTHO05D010374 2.2e-29 135.2 156 42.9
Pp3c6_16530 Physcomitrium patens HOM05D008307 ORTHO05D010374 1.1e-23 116.3 313 28.8
SEGI_31757 Sequoiadendron giganteum HOM05D008757 ORTHO05D010583 3.8e-21 107.8 153 37.9
Pp3c5_17310 Physcomitrium patens HOM05D008307 ORTHO05D010374 2.1e-19 102.1 305 26.9
SMO165G0083 Selaginella moellendorffii HOM05D008307 ORTHO05D010374 9.6e-17 93.2 195 28.7
AagrBONN_evm.TU.Sc2ySwM_369.432 Anthoceros agrestis HOM05D008307 ORTHO05D010374 3.6e-16 91.3 312 25.6
SMO329G0060 Selaginella moellendorffii HOM05D008307 ORTHO05D010374 2.4e-15 88.6 302 27.2
TAR365G0134 Trochodendron aralioides HOM05D008757 ORTHO05D010583 9.3e-12 76.6 153 28.8
Thecc.04G258100 Theobroma cacao HOM05D008307 ORTHO05D010374 3.5e-11 74.7 70 55.7
TWI18G1222 Tripterygium wilfordii HOM05D008757 ORTHO05D010583 6.6e-10 70.5 196 24.0
Mapoly0004s0145 Marchantia polymorpha HOM05D008307 ORTHO05D010374 3.3e-09 68.2 596 23.5
DCAR_012364 Daucus carota HOM05D008757 ORTHO05D010583 3.1e-07 61.6 150 22.7
MSTRG.18114 Avicennia marina HOM05D008757 ORTHO05D010583 6.9e-07 60.5 151 27.2
GSVIVG01027843001 Vitis vinifera HOM05D008307 ORTHO05D010374 6.9e-07 60.5 229 26.6
Cfa005830 Carpinus fangiana HOM05D008757 ORTHO05D010583 1.2e-06 59.7 145 24.8
Gorai.007G124100 Gossypium raimondii HOM05D008757 ORTHO05D010583 4.5e-06 57.8 209 23.9


User provided reference genes

Program Settings