Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR365G0358 Trochodendron aralioides HOM05D001496 ORTHO05D007453 5.9e-250 867.1 439 100.0
TAR633G2480 Trochodendron aralioides HOM05D001496 ORTHO05D007453 4.3e-192 674.9 369 95.1
Actinidia24335 Actinidia chinensis HOM05D001496 ORTHO05D007453 2.4e-187 659.1 440 75.0
vmacro02468 Vaccinium macrocarpon HOM05D001496 ORTHO05D007453 4.2e-187 658.3 441 75.1
GSVIVG01027976001 Vitis vinifera HOM05D001496 ORTHO05D007453 7.1e-187 657.5 440 75.5
Rhsim13G0012500 Rhododendron simsii HOM05D001496 ORTHO05D007453 2.1e-186 656.0 441 74.8
Atru.chr5.1181 Acer truncatum HOM05D001496 ORTHO05D007453 4.3e-184 648.3 420 76.9
PSO170G1216 Papaver somniferum HOM05D001496 ORTHO05D007453 8.1e-183 644.0 425 74.6
Aqoxy2G02984 Aquilegia oxysepala HOM05D001496 ORTHO05D007453 2.6e-181 639.0 429 75.8
Hma1.2p1_0209F.1_g088590 Hydrangea macrophylla HOM05D001496 ORTHO05D007453 5.8e-181 637.9 416 76.9
HanXRQChr12g0382731 Helianthus annuus HOM05D001496 ORTHO05D007453 7.6e-181 637.5 433 72.7
CSS0045492 Camellia sinensis var. sinensis HOM05D001496 ORTHO05D007453 9.3e-179 630.6 433 73.4
Cfa005950 Carpinus fangiana HOM05D001496 ORTHO05D007453 4.6e-178 628.2 436 71.1
Eucgr.H01160 Eucalyptus grandis HOM05D001496 ORTHO05D007453 3.0e-177 625.5 436 72.5
Cpa.g.sc9.209 Carica papaya HOM05D001496 ORTHO05D007453 1.5e-176 623.2 413 75.5
Nn7g38144 Nelumbo nucifera HOM05D001496 ORTHO05D007453 2.5e-176 622.5 429 74.6
Ciclev10020260m.g Citrus clementina HOM05D001496 ORTHO05D007453 2.1e-175 619.4 422 73.2
Prupe.8G258400 Prunus persica HOM05D001496 ORTHO05D007453 4.8e-175 618.2 442 71.3
Lj2C1190T13 Lonicera japonica HOM05D001496 ORTHO05D007453 1.1e-174 617.1 437 71.6
Haze_04897 Corylus avellana HOM05D001496 ORTHO05D007453 1.4e-174 616.7 441 69.2
Dinv19717 Davidia involucrata HOM05D001496 ORTHO05D007453 2.4e-174 615.9 398 78.4
Manes.05G064100 Manihot esculenta HOM05D001496 ORTHO05D007453 2.6e-173 612.5 423 74.0
Duzib133G1333 Durio zibethinus HOM05D001496 ORTHO05D007453 9.9e-173 610.5 440 72.0
TWI14G0104 Tripterygium wilfordii HOM05D001496 ORTHO05D007453 2.2e-172 609.4 441 70.7
CANSAT25G1124 Cannabis sativa HOM05D001496 ORTHO05D007453 8.4e-172 607.4 434 71.2
ECA248G3024 Erigeron canadensis HOM05D001496 ORTHO05D007453 1.1e-171 607.1 406 74.4
Potri.014G131600 Populus trichocarpa HOM05D001496 ORTHO05D007453 1.1e-171 607.1 439 71.8
MD11G1304600 Malus domestica HOM05D001496 ORTHO05D007453 2.4e-171 605.9 439 69.9
Sabra14G0097800 Salix brachista HOM05D001496 ORTHO05D007453 4.2e-171 605.1 439 71.1
Thecc.01G297200 Theobroma cacao HOM05D001496 ORTHO05D007453 1.2e-170 603.6 440 71.1
FAN24G2787 Fragaria x ananassa HOM05D001496 ORTHO05D007453 1.6e-170 603.2 438 70.3
Sc10g0000910 Simmondsia chinensis HOM05D001496 ORTHO05D007453 1.6e-170 603.2 440 70.0
FAN15G3342 Fragaria x ananassa HOM05D001496 ORTHO05D007453 6.0e-170 601.3 443 70.2
RcHm_v2.0_Chr6g0293561 Rosa chinensis HOM05D001496 ORTHO05D007453 1.0e-169 600.5 443 69.8
MELO3C016018.2 Cucumis melo HOM05D001496 ORTHO05D007453 1.1e-168 597.0 439 67.7
CAN.G339.32 Capsicum annuum HOM05D001496 ORTHO05D007453 1.5e-168 596.7 432 69.0
arahy.Tifrunner.gnm1.ann1.RVL32D Arachis hypogaea HOM05D001496 ORTHO05D007453 2.5e-168 595.9 440 69.1
CiPaw.07G106500 Carya illinoinensis HOM05D001496 ORTHO05D007453 7.4e-168 594.3 438 68.3
Ca_09147_v3 Cicer arietinum L. HOM05D001496 ORTHO05D007453 1.3e-167 593.6 440 68.9
arahy.Tifrunner.gnm1.ann1.D4F8D3 Arachis hypogaea HOM05D001496 ORTHO05D007453 1.6e-167 593.2 440 69.3
Lalb_Chr04g0259811 Lupinus albus HOM05D001496 ORTHO05D007453 2.1e-167 592.8 437 68.9
Hund16196 Selenicereus undatus HOM05D001496 ORTHO05D007453 2.1e-167 592.8 438 68.9
TPR.G9626 Trifolium pratense HOM05D001496 ORTHO05D007453 3.7e-167 592.0 441 68.3
Migut.D00196 Erythranthe guttata HOM05D001496 ORTHO05D007453 4.8e-167 591.7 406 72.2
Psat3g022520 Pisum sativum HOM05D001496 ORTHO05D007453 4.8e-167 591.7 441 68.3
CsaV3_7G029100 Cucumis sativus L. HOM05D001496 ORTHO05D007453 6.2e-167 591.3 439 67.0
Gorai.008G011100 Gossypium raimondii HOM05D001496 ORTHO05D007453 6.2e-167 591.3 435 70.1
Glyma.19G210000 Glycine max HOM05D001496 ORTHO05D007453 8.1e-167 590.9 440 68.9
Medtr7g108620 Medicago truncatula HOM05D001496 ORTHO05D007453 8.1e-167 590.9 441 68.3
THA.LOC104802172 Tarenaya hassleriana HOM05D001496 ORTHO05D007453 2.4e-166 589.3 424 71.0
Gohir.D12G011100 Gossypium hirsutum HOM05D001496 ORTHO05D007453 4.0e-166 588.6 435 69.7
PGSC0003DMG400011393 Solanum tuberosum HOM05D001496 ORTHO05D007453 4.0e-166 588.6 432 68.3
Gohir.A12G010700 Gossypium hirsutum HOM05D001496 ORTHO05D007453 6.9e-166 587.8 435 70.1
CDE02G4632 Ceratophyllum demersum HOM05D001496 ORTHO05D007453 2.0e-165 586.3 430 69.3
ClCG09G006040 Citrullus lanatus HOM05D001496 ORTHO05D007453 2.0e-165 586.3 457 65.6
Nitab4.5_0005474g0020 Nicotiana tabacum HOM05D001496 ORTHO05D007453 4.5e-165 585.1 441 66.7
SalBow3G1333 Salvia bowleyana HOM05D001496 ORTHO05D007453 5.8e-165 584.7 427 69.6
Glyma.03G213200 Glycine max HOM05D001496 ORTHO05D007453 1.3e-164 583.6 437 68.2
Lj1g0019023 Lotus japonicus HOM05D001496 ORTHO05D007453 1.7e-164 583.2 440 67.7
Lsat_1_v5_gn_5_190521 Lactuca sativa HOM05D001496 ORTHO05D007453 2.2e-164 582.8 431 69.1
AL4G47330 Arabidopsis lyrata HOM05D001496 ORTHO05D007453 3.8e-164 582.0 433 69.5
Solyc09g074900.4 Solanum lycopersicum HOM05D001496 ORTHO05D007453 6.4e-164 581.3 432 68.1
Sopen09g029720 Solanum pennellii HOM05D001496 ORTHO05D007453 8.4e-164 580.9 432 67.8
DCAR_002814 Daucus carota HOM05D001496 ORTHO05D007453 1.1e-163 580.5 410 70.5
Cc01_g20650 Coffea canephora HOM05D001496 ORTHO05D007453 1.4e-163 580.1 427 69.8
Thhalv10001458m.g Eutrema salsugineum HOM05D001496 ORTHO05D007453 1.2e-162 577.0 401 72.1
Aa31LG1G29100 Aethionema arabicum HOM05D001496 ORTHO05D007453 1.3e-161 573.5 404 72.3
EL10Ac2g04497 Beta vulgaris HOM05D001496 ORTHO05D007453 1.3e-161 573.5 411 70.8
AUR62023251 Chenopodium quinoa HOM05D001496 ORTHO05D007453 2.3e-161 572.8 405 72.3
Carub.0004s3047 Capsella rubella HOM05D001496 ORTHO05D007453 3.0e-161 572.4 418 69.1
AUR62023205 Chenopodium quinoa HOM05D001496 ORTHO05D007453 3.0e-161 572.4 421 70.1
HPP92_016896 Vanilla planifolia HOM05D001496 ORTHO05D007453 6.7e-161 571.2 410 70.5
ATR0796G343 Amborella trichopoda HOM05D001496 ORTHO05D007453 8.7e-161 570.9 389 71.5
BcaB02g08748 Brassica carinata HOM05D001496 ORTHO05D007453 2.5e-160 569.3 428 67.3
Zm00001eb122900 Zea mays HOM05D001496 ORTHO05D007453 4.3e-160 568.5 401 69.8
Sed0004349 Sechium edule HOM05D001496 ORTHO05D007453 2.8e-159 565.8 389 69.9
Sp4g29690 Schrenkiella parvula HOM05D001496 ORTHO05D007453 3.1e-158 562.4 411 68.4
AT2G47760 Arabidopsis thaliana HOM05D001496 ORTHO05D007453 4.0e-158 562.0 420 68.6
unitig_0.g1180 Utricularia gibba HOM05D001496 ORTHO05D007453 2.2e-156 556.2 402 69.2
Oeu048346.1 Olea europaea HOM05D001496 ORTHO05D007453 6.5e-156 554.7 533 57.6
A05p00200 Brassica napus HOM05D001496 ORTHO05D007453 1.1e-155 553.9 456 63.8
Nitab4.5_0000619g0030 Nicotiana tabacum HOM05D001496 ORTHO05D007453 4.2e-155 552.0 499 58.9
Lalb_Chr04g0259801 Lupinus albus HOM05D001496 ORTHO05D007453 4.6e-154 548.5 430 66.0
BcaC02g12544 Brassica carinata HOM05D001496 ORTHO05D007453 2.3e-153 546.2 430 65.6
Peaxi162Scf00067g02528 Petunia axillaris HOM05D001496 ORTHO05D007453 6.7e-153 544.7 440 63.6
C04p00120 Brassica napus HOM05D001496 ORTHO05D007453 1.4e-150 537.0 443 63.4
PGR119G0252 Punica granatum HOM05D001496 ORTHO05D007453 4.1e-150 535.4 446 64.1
PGR119G1256 Punica granatum HOM05D001496 ORTHO05D007453 4.1e-150 535.4 446 64.1
COL.COLO4_23374 Corchorus olitorius HOM05D001496 ORTHO05D007453 4.5e-149 531.9 390 71.8
QL12p027136 Quercus lobata HOM05D001496 ORTHO05D007453 1.8e-145 520.0 371 72.5
Phvul.001G205800 Phaseolus vulgaris HOM05D001496 ORTHO05D007453 5.7e-144 515.0 375 70.9
Pp3c10_8510 Physcomitrium patens HOM05D001496 ORTHO05D007453 3.1e-142 509.2 406 62.8
AagrBONN_evm.TU.Sc2ySwM_368.922 Anthoceros agrestis HOM05D001496 ORTHO05D007453 6.5e-140 501.5 399 63.7
Mapoly0077s0004 Marchantia polymorpha HOM05D001496 ORTHO05D007453 3.6e-138 495.7 407 62.2
TAR633G0725 Trochodendron aralioides HOM05D001496 ORTHO05D007453 1.8e-134 483.4 252 97.6
Hma1.2p1_0209F.1_g088600 Hydrangea macrophylla HOM05D001496 ORTHO05D007453 7.7e-133 478.0 416 61.3
FvH4_2g25370 Fragaria vesca HOM05D001496 ORTHO05D007453 2.5e-131 473.0 333 71.8
SMO111G0159 Selaginella moellendorffii HOM05D001496 ORTHO05D007453 4.1e-126 455.7 387 59.2
CARHR143130 Cardamine hirsuta HOM05D001496 ORTHO05D007453 3.2e-123 446.0 323 70.0
SGA_v2.0_scaffold1G00377 Striga asiatica HOM05D000802 ORTHO05D001074 1.2e-117 427.6 431 55.0
HPP92_016892 Vanilla planifolia HOM05D001496 ORTHO05D007453 8.0e-114 414.8 302 67.5
BraA05t19016Z Brassica rapa HOM05D001496 ORTHO05D007453 6.8e-113 411.8 312 69.2
CBR_g23454 Chara braunii HOM05D001496 ORTHO05D007453 3.7e-111 406.0 398 54.8
Ah.16g101380 Amaranthus hybridus HOM05D001496 ORTHO05D007453 2.9e-108 396.4 322 67.7
FAN20G0671 Fragaria x ananassa HOM05D001496 ORTHO05D007453 5.0e-92 342.4 343 56.3
MCO05G420 Micromonas commoda HOM05D001496 ORTHO05D007453 1.6e-90 337.4 391 47.1
FAN15G0073 Fragaria x ananassa HOM05D001496 ORTHO05D007453 8.6e-84 315.1 227 74.9
MD03G1285200 Malus domestica HOM05D001496 ORTHO05D007453 1.9e-83 313.9 229 73.8
MD03G1285100 Malus domestica HOM05D001496 ORTHO05D007453 3.4e-80 303.1 219 66.2
PRCOL_00006487 Prasinoderma coloniale HOM05D001496 ORTHO05D007453 1.2e-77 294.7 389 46.5
Haze_26252 Corylus avellana HOM05D001496 ORTHO05D007453 2.1e-66 257.3 392 38.5
COL.COLO4_15168 Corchorus olitorius HOM05D001496 ORTHO05D007453 3.5e-53 213.4 120 85.0
Gohir.A05G239300 Gossypium hirsutum HOM05D001496 ORTHO05D007453 7.4e-51 205.7 147 70.7
COL.COLO4_05649 Corchorus olitorius HOM05D001496 ORTHO05D007453 1.8e-49 201.1 111 86.5
Gohir.A01G111300 Gossypium hirsutum HOM05D001496 ORTHO05D007453 1.6e-42 177.9 131 69.5
Gohir.A02G071100 Gossypium hirsutum HOM05D001496 ORTHO05D007453 4.1e-41 173.3 131 67.9
Gohir.A12G153600 Gossypium hirsutum HOM05D001496 ORTHO05D007453 7.6e-40 169.1 131 66.4
Gohir.A07G160700 Gossypium hirsutum HOM05D001496 ORTHO05D007453 1.9e-35 154.5 103 78.6
Os01g0172000 Oryza sativa ssp. japonica HOM05D001496 ORTHO05D007453 3.3e-35 153.7 103 68.9
MBI19_g29447_MAGBIO Magnolia biondii HOM05D001496 ORTHO05D007453 7.9e-29 132.5 81 81.5
BraA03t11820Z Brassica rapa HOM05D001496 ORTHO05D007453 2.3e-28 131.0 87 71.3
A03p26050 Brassica napus HOM05D000073 ORTHO05D000033 8.8e-28 129.0 104 63.5
MBI14_g09685_MAGBIO Magnolia biondii HOM05D001496 ORTHO05D007453 3.7e-26 123.6 81 79.0
SEGI_31251 Sequoiadendron giganteum HOM05D001496 ORTHO05D007453 5.0e-23 113.2 76 65.8
SEGI_39661 Sequoiadendron giganteum HOM05D001496 ORTHO05D007453 8.5e-23 112.5 66 71.2
FAN27G2092 Fragaria x ananassa HOM05D001496 ORTHO05D007453 1.6e-21 108.2 92 57.6
BolC3t15455H Brassica oleracea HOM05D001496 ORTHO05D007453 1.8e-20 104.8 109 53.2
C03p31050 Brassica napus HOM05D001496 ORTHO05D007453 1.3e-18 98.6 111 51.4
Actinidia02729 Actinidia chinensis HOM05D001496 ORTHO05D007453 2.8e-18 97.4 137 48.9
QL02p058842 Quercus lobata HOM05D001496 ORTHO05D000125 4.1e-17 93.6 49 81.6
QL02p059219 Quercus lobata HOM05D001496 ORTHO05D007453 7.2e-14 82.8 51 74.5
HanXRQChr05g0138141 Helianthus annuus HOM05D001496 ORTHO05D007453 2.7e-13 80.9 67 56.7
Gohir.A01G167500 Gossypium hirsutum HOM05D001496 ORTHO05D047734 7.5e-11 72.8 41 80.5


User provided reference genes

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