Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR365G0320 Trochodendron aralioides HOM05D003940 ORTHO05D004461 1.6e-58 229.2 115 100.0
TAR636G1753 Trochodendron aralioides HOM05D003940 ORTHO05D004461 1.7e-39 166.0 115 74.8
TAR362G0514 Trochodendron aralioides HOM05D003940 ORTHO05D004461 1.1e-38 163.3 115 73.9
TAR602G0001 Trochodendron aralioides HOM05D003940 ORTHO05D004461 5.1e-28 127.9 115 63.5
Nn1g00062 Nelumbo nucifera HOM05D003940 ORTHO05D004461 1.1e-27 126.7 128 53.9
Nn1g02702 Nelumbo nucifera HOM05D003940 ORTHO05D004461 1.1e-27 126.7 128 53.9
Aqoxy5G00265 Aquilegia oxysepala HOM05D003940 ORTHO05D004461 1.3e-26 123.2 120 58.3
GSVIVG01027728001 Vitis vinifera HOM05D000515 ORTHO05D003188 8.4e-23 110.5 100 60.0
Dinv44656 Davidia involucrata HOM05D003940 ORTHO05D004461 1.2e-21 106.7 118 55.9
Hma1.2p1_0310F.1_g120730 Hydrangea macrophylla HOM05D003940 ORTHO05D004461 2.7e-21 105.5 118 56.8
Cfa008351 Carpinus fangiana HOM05D003940 ORTHO05D004461 1.8e-20 102.8 111 57.7
Hma1.2p1_0986F.1_g244370 Hydrangea macrophylla HOM05D003940 ORTHO05D004461 5.1e-20 101.3 108 53.7
Cc03_g05120 Coffea canephora HOM05D003940 ORTHO05D004461 1.9e-19 99.4 113 49.6
Haze_11334 Corylus avellana HOM05D003940 ORTHO05D004461 5.7e-19 97.8 112 55.4
vmacro08448 Vaccinium macrocarpon HOM05D003940 ORTHO05D004461 5.7e-19 97.8 107 53.3
Cpa.g.sc44.90 Carica papaya HOM05D003940 ORTHO05D004461 1.3e-18 96.7 104 52.9
PSO210G0601 Papaver somniferum HOM05D003940 ORTHO05D004461 1.6e-18 96.3 109 50.5
MBI18_g43342_MAGBIO Magnolia biondii HOM05D003940 ORTHO05D004461 2.8e-18 95.5 113 49.6
Solyc06g053700.1 Solanum lycopersicum HOM05D003940 ORTHO05D004461 6.3e-18 94.4 110 51.8
Sopen06g018810 Solanum pennellii HOM05D003940 ORTHO05D004461 6.3e-18 94.4 110 51.8
Actinidia04462 Actinidia chinensis HOM05D003940 ORTHO05D004461 8.2e-18 94.0 107 55.1
Nn3g19606 Nelumbo nucifera HOM05D003940 ORTHO05D004461 8.2e-18 94.0 121 47.9
PGSC0003DMG400016324 Solanum tuberosum HOM05D003940 ORTHO05D004461 8.2e-18 94.0 110 51.8
Ciclev10006290m.g Citrus clementina HOM05D003940 ORTHO05D004461 1.1e-17 93.6 105 53.3
Rhsim04G0188200 Rhododendron simsii HOM05D003940 ORTHO05D004461 2.4e-17 92.4 109 52.3
CSS0034657 Camellia sinensis var. sinensis HOM05D003940 ORTHO05D004461 3.1e-17 92.0 108 53.7
COL.COLO4_15828 Corchorus olitorius HOM05D003940 ORTHO05D004461 3.1e-17 92.0 111 53.2
Duzib151G0370 Durio zibethinus HOM05D003940 ORTHO05D004461 3.1e-17 92.0 97 51.5
QL06p016655 Quercus lobata HOM05D003940 ORTHO05D004461 3.1e-17 92.0 113 53.1
CiPaw.01G188000 Carya illinoinensis HOM05D003940 ORTHO05D004461 4.1e-17 91.7 114 51.8
CSS0017531 Camellia sinensis var. sinensis HOM05D003940 ORTHO05D004461 5.3e-17 91.3 95 56.8
CANSAT78G1835 Cannabis sativa HOM05D003940 ORTHO05D004461 6.9e-17 90.9 113 52.2
Potri.010G073900 Populus trichocarpa HOM05D003940 ORTHO05D004461 6.9e-17 90.9 110 51.8
Solyc09g089650.1 Solanum lycopersicum HOM05D003940 ORTHO05D004461 4.5e-16 88.2 107 48.6
PGSC0003DMG400017255 Solanum tuberosum HOM05D003940 ORTHO05D004461 5.9e-16 87.8 105 49.5
MSTRG.9915 Avicennia marina HOM05D003940 ORTHO05D004461 7.7e-16 87.4 107 51.4
Duzib212G0271 Durio zibethinus HOM05D003940 ORTHO05D004461 1.3e-15 86.7 102 50.0
Peaxi162Scf00024g01711 Petunia axillaris HOM05D003940 ORTHO05D004461 1.3e-15 86.7 104 48.1
Sopen09g032590 Solanum pennellii HOM05D003940 ORTHO05D004461 1.7e-15 86.3 107 48.6
Thecc.04G250000 Theobroma cacao HOM05D003940 ORTHO05D004461 1.7e-15 86.3 100 49.0
Gohir.A09G225100 Gossypium hirsutum HOM05D003940 ORTHO05D004461 2.9e-15 85.5 105 47.6
Oeu025569.1 Olea europaea HOM05D003940 ORTHO05D004461 5.0e-15 84.7 108 46.3
Sed0016632 Sechium edule HOM05D003940 ORTHO05D004461 5.0e-15 84.7 115 48.7
Gorai.006G248700 Gossypium raimondii HOM05D003940 ORTHO05D004461 6.5e-15 84.3 105 46.7
Gohir.D09G226800 Gossypium hirsutum HOM05D003940 ORTHO05D004461 8.5e-15 84.0 105 46.7
PGR031G1035 Punica granatum HOM05D003940 ORTHO05D004461 1.1e-14 83.6 107 48.6
Gohir.D02G043800 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.4e-14 83.2 96 47.9
Gohir.D10G154400 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.4e-14 83.2 115 48.7
Gorai.011G172300 Gossypium raimondii HOM05D003940 ORTHO05D004461 1.4e-14 83.2 115 48.7
Gohir.A02G037100 Gossypium hirsutum HOM05D003940 ORTHO05D004461 2.5e-14 82.4 108 44.4
Sabra10G0034600 Salix brachista HOM05D003940 ORTHO05D004461 2.5e-14 82.4 110 49.1
CiPaw.02G114800 Carya illinoinensis HOM05D003940 ORTHO05D004461 3.2e-14 82.0 112 48.2
Migut.G00452 Erythranthe guttata HOM05D003940 ORTHO05D004461 3.2e-14 82.0 107 46.7
Gorai.005G048200 Gossypium raimondii HOM05D003940 ORTHO05D004461 3.2e-14 82.0 96 46.9
SalBow2G1766 Salvia bowleyana HOM05D003940 ORTHO05D004461 3.2e-14 82.0 111 49.5
AL3G37790 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 7.2e-14 80.9 107 42.1
Migut.G00451 Erythranthe guttata HOM05D003940 ORTHO05D004461 9.4e-14 80.5 107 46.7
Glyma.20G202600 Glycine max HOM05D003940 ORTHO05D004461 1.2e-13 80.1 104 47.1
Manes.15G038200 Manihot esculenta HOM05D003940 ORTHO05D004461 1.2e-13 80.1 109 47.7
Lj5g0009696 Lotus japonicus HOM05D003940 ORTHO05D004461 1.6e-13 79.7 113 44.2
FAN12G3937 Fragaria x ananassa HOM05D003940 ORTHO05D004461 2.7e-13 79.0 129 45.0
FAN17G2041 Fragaria x ananassa HOM05D003940 ORTHO05D004461 2.7e-13 79.0 129 45.0
SalBow3G4424 Salvia bowleyana HOM05D003940 ORTHO05D004461 3.6e-13 78.6 93 48.4
Glyma.10G188200 Glycine max HOM05D003940 ORTHO05D004461 4.6e-13 78.2 104 46.2
Oeu063884.1 Olea europaea HOM05D003940 ORTHO05D004461 4.6e-13 78.2 110 45.5
Peaxi162Scf00325g00012 Petunia axillaris HOM05D003940 ORTHO05D004461 4.6e-13 78.2 112 43.8
Peaxi162Scf00325g00015 Petunia axillaris HOM05D003940 ORTHO05D004461 4.6e-13 78.2 112 43.8
Gohir.A09G057700 Gossypium hirsutum HOM05D003940 ORTHO05D004461 6.1e-13 77.8 97 50.5
Gorai.006G070500 Gossypium raimondii HOM05D003940 ORTHO05D004461 6.1e-13 77.8 97 51.5
Nitab4.5_0000342g0180 Nicotiana tabacum HOM05D003940 ORTHO05D004461 6.1e-13 77.8 99 48.5
AT1G04330 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 7.9e-13 77.4 105 47.6
AT3G23170 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 7.9e-13 77.4 107 40.2
CARHR003650 Cardamine hirsuta HOM05D003940 ORTHO05D004461 7.9e-13 77.4 105 47.6
Gohir.D09G056900 Gossypium hirsutum HOM05D003940 ORTHO05D004461 7.9e-13 77.4 97 51.5
Nitab4.5_0007234g0020 Nicotiana tabacum HOM05D003940 ORTHO05D004461 7.9e-13 77.4 101 48.5
Carub.0001s0351 Capsella rubella HOM05D003940 ORTHO05D004461 1.0e-12 77.0 100 50.0
ClCG06G006840 Citrullus lanatus HOM05D003940 ORTHO05D004461 1.0e-12 77.0 101 46.5
MELO3C022975.2 Cucumis melo HOM05D003940 ORTHO05D004461 1.4e-12 76.6 132 40.2
DCAR_027292 Daucus carota HOM05D003940 ORTHO05D004461 1.4e-12 76.6 109 45.9
DCAR_027293 Daucus carota HOM05D003940 ORTHO05D004461 1.4e-12 76.6 109 45.9
Potri.008G164801 Populus trichocarpa HOM05D003940 ORTHO05D004461 1.4e-12 76.6 110 46.4
AL1G13930 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 1.8e-12 76.3 105 46.7
Lalb_Chr19g0128361 Lupinus albus HOM05D003940 ORTHO05D004461 1.8e-12 76.3 107 45.8
PGR004G1022 Punica granatum HOM05D003940 ORTHO05D004461 1.8e-12 76.3 115 44.3
THA.LOC104822808 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 1.8e-12 76.3 111 39.6
Aa31LG8G9650 Aethionema arabicum HOM05D003940 ORTHO05D004461 2.3e-12 75.9 111 40.5
Lsat_1_v5_gn_3_122140 Lactuca sativa HOM05D003940 ORTHO05D004461 2.3e-12 75.9 93 49.5
FvH4_4g03100 Fragaria vesca HOM05D003940 ORTHO05D004461 3.0e-12 75.5 132 44.7
Prupe.1G034700 Prunus persica HOM05D003940 ORTHO05D004461 3.0e-12 75.5 117 47.0
RcHm_v2.0_Chr4g0391391 Rosa chinensis HOM05D003940 ORTHO05D004461 3.0e-12 75.5 126 44.4
Gohir.A10G112500 Gossypium hirsutum HOM05D003940 ORTHO05D004461 3.9e-12 75.1 103 48.5
Lsat_1_v5_gn_5_72560 Lactuca sativa HOM05D003940 ORTHO05D004461 3.9e-12 75.1 101 50.5
SGA_v2.0_scaffold101G29832 Striga asiatica HOM05D003940 ORTHO05D004461 3.9e-12 75.1 107 43.9
BcaC05g24452 Brassica carinata HOM05D003940 ORTHO05D004461 5.1e-12 74.7 100 46.0
Phvul.007G129450 Phaseolus vulgaris HOM05D003940 ORTHO05D004461 5.1e-12 74.7 104 44.2
A10p02740 Brassica napus HOM05D003940 ORTHO05D004461 6.7e-12 74.3 105 45.7
BraA10t42542Z Brassica rapa HOM05D003940 ORTHO05D004461 6.7e-12 74.3 105 45.7
EL10Ac3g05913 Beta vulgaris HOM05D003940 ORTHO05D004461 8.8e-12 73.9 99 48.5
Migut.N00250 Erythranthe guttata HOM05D003940 ORTHO05D004461 8.8e-12 73.9 92 52.2
FAN22G2069 Fragaria x ananassa HOM05D003940 ORTHO05D004461 8.8e-12 73.9 132 43.9
Sc25g0004050 Simmondsia chinensis HOM05D003940 ORTHO05D004461 8.8e-12 73.9 102 45.1
TPR.G15869 Trifolium pratense HOM05D003940 ORTHO05D004461 8.8e-12 73.9 108 43.5
C05p02510 Brassica napus HOM05D003940 ORTHO05D004461 1.1e-11 73.6 105 45.7
BolC5t29030H Brassica oleracea HOM05D003940 ORTHO05D004461 1.5e-11 73.2 105 45.7
Sp1g03140 Schrenkiella parvula HOM05D003940 ORTHO05D004461 1.5e-11 73.2 105 47.6
CARHR220660 Cardamine hirsuta HOM05D003940 ORTHO05D004461 2.0e-11 72.8 104 42.3
AUR62015478 Chenopodium quinoa HOM05D000816 ORTHO05D005265 2.0e-11 72.8 113 48.7
Thhalv10021654m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 2.0e-11 72.8 116 45.7
Psat6g138240 Pisum sativum HOM05D003940 ORTHO05D004461 2.0e-11 72.8 108 42.6
THA.LOC104822248 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 2.0e-11 72.8 108 44.4
TPR.G26431 Trifolium pratense HOM05D006440 ORTHO05D003987 2.5e-11 72.4 109 41.3
THA.LOC104808609 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 3.3e-11 72.0 109 43.1
Thhalv10009178m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 4.3e-11 71.6 105 44.8
HanXRQChr03g0092241 Helianthus annuus HOM05D003940 ORTHO05D004461 4.3e-11 71.6 108 46.3
HanXRQChr13g0425481 Helianthus annuus HOM05D003940 ORTHO05D004461 4.3e-11 71.6 106 46.2
Sp3g20820 Schrenkiella parvula HOM05D003940 ORTHO05D004461 4.3e-11 71.6 106 42.5
Atru.chr4.2138 Acer truncatum HOM05D003940 ORTHO05D004461 5.7e-11 71.2 116 45.7
Aqoxy2G03616 Aquilegia oxysepala HOM05D003940 ORTHO05D004461 5.7e-11 71.2 111 39.6
Carub.0003s2339 Capsella rubella HOM05D003940 ORTHO05D004461 5.7e-11 71.2 104 38.5
Lalb_Chr21g0312371 Lupinus albus HOM05D003940 ORTHO05D004461 7.4e-11 70.9 97 42.3
AUR62002262 Chenopodium quinoa HOM05D003940 ORTHO05D004461 9.7e-11 70.5 107 44.9
Eucgr.H03139 Eucalyptus grandis HOM05D003940 ORTHO05D004461 9.7e-11 70.5 106 46.2
HPP92_022626 Vanilla planifolia HOM05D027912 ORTHO05D004461 9.7e-11 70.5 106 43.4
Sc13g0005150 Simmondsia chinensis HOM05D003940 ORTHO05D004461 1.3e-10 70.1 96 45.8
BcaB06g26449 Brassica carinata HOM05D003940 ORTHO05D004461 1.7e-10 69.7 109 43.1
Sc19g0003500 Simmondsia chinensis HOM05D003940 ORTHO05D004461 1.7e-10 69.7 95 47.4
CAN.G738.11 Capsicum annuum HOM05D003940 ORTHO05D004461 2.2e-10 69.3 112 39.3
CAN.G793.6 Capsicum annuum HOM05D003940 ORTHO05D004461 2.2e-10 69.3 102 42.2
MD13G1210200 Malus domestica HOM05D003940 ORTHO05D004461 2.2e-10 69.3 124 44.4
Ca_09815_v3 Cicer arietinum L. HOM05D003940 ORTHO05D004461 2.8e-10 68.9 99 41.4
Thhalv10027546m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 2.8e-10 68.9 112 43.8
TWI73G0411 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 2.8e-10 68.9 112 42.9
TWI09G0780 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 4.8e-10 68.2 112 42.9
ECA233G6082 Erigeron canadensis HOM05D003940 ORTHO05D004461 6.3e-10 67.8 102 44.1
MD16G1213100 Malus domestica HOM05D003940 ORTHO05D004461 6.3e-10 67.8 124 42.7
BcaC07g42173 Brassica carinata HOM05D003940 ORTHO05D004461 8.2e-10 67.4 90 44.4
BcaC07g42193 Brassica carinata HOM05D003940 ORTHO05D004461 8.2e-10 67.4 90 44.4
BraA07t28731Z Brassica rapa HOM05D003940 ORTHO05D004461 8.2e-10 67.4 110 43.6
Psat6g132880 Pisum sativum HOM05D003940 ORTHO05D004461 8.2e-10 67.4 113 41.6
C07p14380 Brassica napus HOM05D003940 ORTHO05D004461 1.4e-09 66.6 109 41.3
CsaV3_2G012950 Cucumis sativus L. HOM05D003940 ORTHO05D004461 1.4e-09 66.6 113 39.8
A07p09330 Brassica napus HOM05D003940 ORTHO05D004461 1.8e-09 66.2 110 43.6
HPP92_008406 Vanilla planifolia HOM05D027912 ORTHO05D004461 4.1e-09 65.1 104 40.4
ATR0680G398 Amborella trichopoda HOM05D003940 ORTHO05D004461 1.2e-08 63.5 109 44.0
BolC7t41935H Brassica oleracea HOM05D003940 ORTHO05D004461 1.2e-08 63.5 109 40.4
CsaV3_3G012380 Cucumis sativus L. HOM05D000244 ORTHO05D000179 1.2e-08 63.5 94 44.7
CARHR099110 Cardamine hirsuta HOM05D003940 ORTHO05D004461 2.0e-08 62.8 104 41.3
SHI00703 Sapria himalayana HOM05D003940 ORTHO05D004461 2.0e-08 62.8 111 39.6
HPP92_027996 Vanilla planifolia HOM05D027912 ORTHO05D004461 2.6e-08 62.4 104 38.5
TWI53G1738 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 3.4e-08 62.0 98 42.9
Sp7g12530 Schrenkiella parvula HOM05D003940 ORTHO05D004461 4.5e-08 61.6 110 39.1
CiPaw.13G089400 Carya illinoinensis HOM05D008943 ORTHO05D010477 5.9e-08 61.2 112 35.7
TWI53G1893 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 5.9e-08 61.2 98 42.9
Glyma.10G008021 Glycine max HOM05D003940 ORTHO05D004461 7.7e-08 60.8 105 39.0
AT4G14450 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 1.3e-07 60.1 111 38.7
ClCG05G004480 Citrullus lanatus HOM05D003940 ORTHO05D004461 1.3e-07 60.1 94 41.5
Lj6g0004880 Lotus japonicus HOM05D003940 ORTHO05D004461 1.3e-07 60.1 106 39.6
A04p07580 Brassica napus HOM05D003940 ORTHO05D004461 2.2e-07 59.3 99 42.4
BraA04t16449Z Brassica rapa HOM05D003940 ORTHO05D004461 2.2e-07 59.3 99 42.4
CDE05G2198 Ceratophyllum demersum HOM05D000017 ORTHO05D000013 2.2e-07 59.3 89 44.9
HPP92_025972 Vanilla planifolia HOM05D027912 ORTHO05D004461 2.2e-07 59.3 115 35.7
Medtr1g073910 Medicago truncatula HOM05D003940 ORTHO05D004461 2.9e-07 58.9 109 42.2
Ca_05393_v3 Cicer arietinum L. HOM05D003940 ORTHO05D004461 3.8e-07 58.5 107 38.3
TPR.G6894 Trifolium pratense HOM05D008943 ORTHO05D010477 3.8e-07 58.5 102 34.3
unitig_32.g11714 Utricularia gibba HOM05D003940 ORTHO05D004461 5.0e-07 58.2 107 39.3
CiPaw.14G065200 Carya illinoinensis HOM05D008943 ORTHO05D010477 8.5e-07 57.4 106 37.7
Sed0000021 Sechium edule HOM05D003940 ORTHO05D004461 8.5e-07 57.4 90 43.3
AL7G41690 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 1.1e-06 57.0 108 38.9
BcaC02g09310 Brassica carinata HOM05D003940 ORTHO05D004461 1.4e-06 56.6 99 40.4
C04p41270 Brassica napus HOM05D003940 ORTHO05D004461 1.4e-06 56.6 99 40.4
BolC4t25705H Brassica oleracea HOM05D003940 ORTHO05D004461 1.4e-06 56.6 99 40.4
Medtr1g044125 Medicago truncatula HOM05D003940 ORTHO05D004461 1.9e-06 56.2 109 41.3
Sed0008236 Sechium edule HOM05D003940 ORTHO05D004461 3.2e-06 55.5 83 42.2
BcaB02g08606 Brassica carinata HOM05D003940 ORTHO05D004461 4.2e-06 55.1 99 39.4
A03p43180 Brassica napus HOM05D003940 ORTHO05D004461 4.2e-06 55.1 96 39.6
Glyma.15G035400 Glycine max HOM05D008943 ORTHO05D010477 4.2e-06 55.1 113 35.4
Manes.03G167050 Manihot esculenta HOM05D003940 ORTHO05D004461 4.2e-06 55.1 120 40.0
BraA03t13459Z Brassica rapa HOM05D003940 ORTHO05D004461 9.4e-06 53.9 105 37.1
Medtr2g097730 Medicago truncatula HOM05D008943 ORTHO05D010477 9.4e-06 53.9 104 32.7


User provided reference genes

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