Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR365G0270 Trochodendron aralioides HOM05D006420 ORTHO05D008009 1.1e-161 573.2 282 100.0
TAR636G1821 Trochodendron aralioides HOM05D006420 ORTHO05D008009 1.8e-119 433.0 286 79.0
Nn1g02269 Nelumbo nucifera HOM05D006420 ORTHO05D008009 3.4e-110 402.1 284 72.9
Dinv23938 Davidia involucrata HOM05D006420 ORTHO05D008009 2.5e-108 396.0 279 73.8
Aqoxy5G00493 Aquilegia oxysepala HOM05D006420 ORTHO05D008009 2.2e-104 382.9 281 71.2
GSVIVG01000081001 Vitis vinifera HOM05D006420 ORTHO05D008009 1.4e-103 380.2 281 69.4
Lj9A85G78 Lonicera japonica HOM05D006420 ORTHO05D008009 4.5e-102 375.2 279 68.8
Lj9A86G16 Lonicera japonica HOM05D006420 ORTHO05D008009 7.7e-102 374.4 279 68.5
Actinidia05697 Actinidia chinensis HOM05D006420 ORTHO05D008009 1.3e-101 373.6 280 68.9
Nn4g26277 Nelumbo nucifera HOM05D006420 ORTHO05D008009 3.8e-101 372.1 242 78.1
CSS0034260 Camellia sinensis var. sinensis HOM05D006420 ORTHO05D008009 1.2e-99 367.1 281 67.3
CSS0037657 Camellia sinensis var. sinensis HOM05D006420 ORTHO05D008009 8.0e-99 364.4 281 66.9
Hma1.2p1_0928F.1_g237740 Hydrangea macrophylla HOM05D006420 ORTHO05D008009 1.0e-98 364.0 281 68.7
Lsat_1_v5_gn_9_123421 Lactuca sativa HOM05D006420 ORTHO05D008009 1.3e-96 357.1 222 78.8
Nitab4.5_0000137g0140 Nicotiana tabacum HOM05D006420 ORTHO05D008009 2.2e-96 356.3 280 64.6
MSTRG.5100 Avicennia marina HOM05D006420 ORTHO05D008009 2.8e-96 355.9 282 65.2
RhsimUnG0226900 Rhododendron simsii HOM05D006420 ORTHO05D008009 4.8e-96 355.1 244 71.7
Peaxi162Scf00037g00513 Petunia axillaris HOM05D006420 ORTHO05D008009 1.8e-95 353.2 232 74.1
CAN.G1034.41 Capsicum annuum HOM05D006420 ORTHO05D008009 7.0e-95 351.3 237 72.6
PGSC0003DMG400024687 Solanum tuberosum HOM05D006420 ORTHO05D008009 7.0e-95 351.3 281 64.1
Cc02_g33350 Coffea canephora HOM05D006420 ORTHO05D008009 2.0e-94 349.7 234 73.9
PSO210G7816 Papaver somniferum HOM05D006420 ORTHO05D008009 2.0e-94 349.7 286 61.5
Solyc01g099130.3 Solanum lycopersicum HOM05D006420 ORTHO05D008009 2.0e-94 349.7 281 65.8
Sopen01g042690 Solanum pennellii HOM05D006420 ORTHO05D008009 2.0e-94 349.7 281 65.1
Hund21694 Selenicereus undatus HOM05D006420 ORTHO05D008009 1.0e-93 347.4 282 64.9
PGR083G0891 Punica granatum HOM05D006420 ORTHO05D008009 1.3e-93 347.1 281 63.3
Manes.08G120400 Manihot esculenta HOM05D006420 ORTHO05D008009 2.2e-93 346.3 281 63.3
COL.COLO4_13456 Corchorus olitorius HOM05D006420 ORTHO05D008009 8.5e-93 344.4 223 74.4
Thecc.05G302400 Theobroma cacao HOM05D006420 ORTHO05D008009 1.9e-92 343.2 222 73.9
Oeu010909.1 Olea europaea HOM05D006420 ORTHO05D008009 1.6e-91 340.1 230 72.2
vmacro05011 Vaccinium macrocarpon HOM05D006420 ORTHO05D008009 4.7e-91 338.6 220 76.4
Gohir.D08G227700 Gossypium hirsutum HOM05D006420 ORTHO05D008009 6.1e-91 338.2 280 61.4
Gorai.004G241900 Gossypium raimondii HOM05D006420 ORTHO05D008009 6.1e-91 338.2 280 61.4
Migut.N01987 Erythranthe guttata HOM05D006420 ORTHO05D008009 8.0e-91 337.8 237 71.7
Migut.N02012 Erythranthe guttata HOM05D006420 ORTHO05D008009 8.0e-91 337.8 237 71.7
CANSAT54G1557 Cannabis sativa HOM05D006420 ORTHO05D008009 3.0e-90 335.9 223 74.4
CiPaw.07G020700 Carya illinoinensis HOM05D006420 ORTHO05D008009 3.0e-90 335.9 219 74.9
Gohir.A08G210900 Gossypium hirsutum HOM05D006420 ORTHO05D008009 3.0e-90 335.9 280 61.1
Duzib177G0348 Durio zibethinus HOM05D006420 ORTHO05D008009 6.8e-90 334.7 225 70.7
Prupe.6G324800 Prunus persica HOM05D006420 ORTHO05D008009 2.0e-89 333.2 287 59.6
Ciclev10002177m.g Citrus clementina HOM05D006420 ORTHO05D008009 2.6e-89 332.8 280 61.4
Cfa006594 Carpinus fangiana HOM05D006420 ORTHO05D008009 9.8e-89 330.9 219 72.1
EL10Ac4g09358 Beta vulgaris HOM05D006420 ORTHO05D008009 1.3e-88 330.5 281 58.0
FAN14G2531 Fragaria x ananassa HOM05D006420 ORTHO05D008009 1.3e-88 330.5 287 59.2
FvH4_6g06020 Fragaria vesca HOM05D006420 ORTHO05D008009 8.3e-88 327.8 229 68.6
RcHm_v2.0_Chr3g0454981 Rosa chinensis HOM05D006420 ORTHO05D008009 1.4e-87 327.0 229 69.0
THA.LOC104820863 Tarenaya hassleriana HOM05D006420 ORTHO05D008009 1.4e-87 327.0 249 62.7
Sc06g0003280 Simmondsia chinensis HOM05D006420 ORTHO05D008009 5.4e-87 325.1 221 72.9
Cpa.g.sc48.61 Carica papaya HOM05D006420 ORTHO05D008009 7.0e-87 324.7 223 69.1
DCAR_029409 Daucus carota HOM05D006420 ORTHO05D008009 7.0e-87 324.7 218 72.9
Duzib106G1877 Durio zibethinus HOM05D006420 ORTHO05D008009 7.0e-87 324.7 219 71.2
FAN09G3808 Fragaria x ananassa HOM05D006420 ORTHO05D008009 1.2e-86 323.9 234 66.7
MD04G1204800 Malus domestica HOM05D006420 ORTHO05D008009 1.2e-86 323.9 285 59.3
TWI56G0424 Tripterygium wilfordii HOM05D006420 ORTHO05D008009 2.0e-86 323.2 279 61.6
Ah.04g160290 Amaranthus hybridus HOM05D006420 ORTHO05D008009 2.7e-86 322.8 225 68.0
Phvul.007G179700 Phaseolus vulgaris HOM05D006420 ORTHO05D008009 4.5e-86 322.0 282 60.3
MD12G1218500 Malus domestica HOM05D006420 ORTHO05D008009 1.0e-85 320.9 280 59.3
Sed0005627 Sechium edule HOM05D006420 ORTHO05D008009 1.3e-85 320.5 283 60.4
AUR62000819 Chenopodium quinoa HOM05D006420 ORTHO05D008009 1.7e-85 320.1 281 58.4
FAN05G3282 Fragaria x ananassa HOM05D006420 ORTHO05D008009 1.7e-85 320.1 229 67.7
Lalb_Chr21g0310681 Lupinus albus HOM05D006420 ORTHO05D008009 2.2e-85 319.7 281 60.5
FAN02G2504 Fragaria x ananassa HOM05D006420 ORTHO05D008009 2.9e-85 319.3 226 68.1
Ca_10114_v3 Cicer arietinum L. HOM05D006420 ORTHO05D008009 3.8e-85 318.9 223 70.0
ATR0332G062 Amborella trichopoda HOM05D006420 ORTHO05D008009 5.0e-85 318.5 280 57.9
Cfa006595 Carpinus fangiana HOM05D006420 ORTHO05D008009 5.0e-85 318.5 218 71.1
Glyma.10G154000 Glycine max HOM05D006420 ORTHO05D008009 8.5e-85 317.8 282 58.5
Glyma.20G234300 Glycine max HOM05D006420 ORTHO05D008009 8.5e-85 317.8 282 58.5
AUR62005152 Chenopodium quinoa HOM05D006420 ORTHO05D008009 3.2e-84 315.8 291 56.7
arahy.Tifrunner.gnm1.ann1.GHU2GX Arachis hypogaea HOM05D006420 ORTHO05D008009 7.2e-84 314.7 223 70.4
FAN05G1000 Fragaria x ananassa HOM05D006420 ORTHO05D008009 9.4e-84 314.3 247 64.4
TPR.G6113 Trifolium pratense HOM05D006420 ORTHO05D008009 2.1e-83 313.2 224 68.3
Psat6g150480 Pisum sativum HOM05D006420 ORTHO05D008009 2.7e-83 312.8 281 58.7
Atru.chr2.393 Acer truncatum HOM05D006420 ORTHO05D008009 3.6e-83 312.4 228 64.9
MBI04_g29616_MAGBIO Magnolia biondii HOM05D006420 ORTHO05D008009 3.6e-83 312.4 186 78.5
ClCG02G015760 Citrullus lanatus HOM05D006420 ORTHO05D008009 4.7e-83 312.0 283 57.2
Medtr1g082950 Medicago truncatula HOM05D006420 ORTHO05D008009 8.0e-83 311.2 223 68.2
VMungo0720G1765 Vigna mungo HOM05D006420 ORTHO05D008009 8.0e-83 311.2 282 58.5
arahy.Tifrunner.gnm1.ann1.7ESY4D Arachis hypogaea HOM05D006420 ORTHO05D008009 1.0e-82 310.8 223 69.5
HPP92_020377 Vanilla planifolia HOM05D006420 ORTHO05D008009 4.0e-82 308.9 282 58.5
Thhalv10023646m.g Eutrema salsugineum HOM05D006420 ORTHO05D008009 6.8e-82 308.1 235 62.6
CsaV3_2G005340 Cucumis sativus L. HOM05D006420 ORTHO05D008009 1.5e-81 307.0 283 57.6
QL03p007116 Quercus lobata HOM05D006420 ORTHO05D008009 2.0e-81 306.6 255 62.7
Lj5g0015213 Lotus japonicus HOM05D006420 ORTHO05D008009 7.5e-81 304.7 224 67.9
BcaC06g31763 Brassica carinata HOM05D006420 ORTHO05D008009 1.7e-80 303.5 236 60.6
Aa31LG2G11700 Aethionema arabicum HOM05D006774 ORTHO05D008411 2.2e-80 303.1 235 60.4
A03p68650 Brassica napus HOM05D006420 ORTHO05D008009 6.3e-80 301.6 235 60.9
BraSC39t46193Z Brassica rapa HOM05D006420 ORTHO05D008009 6.3e-80 301.6 235 60.9
BcaC02g10755 Brassica carinata HOM05D006420 ORTHO05D008009 4.5e-78 295.4 235 60.0
C04p25420 Brassica napus HOM05D006420 ORTHO05D008009 4.5e-78 295.4 235 60.0
BolC4t24060H Brassica oleracea HOM05D006420 ORTHO05D008009 4.5e-78 295.4 235 60.0
CARHR287540 Cardamine hirsuta HOM05D006420 ORTHO05D008009 7.7e-78 294.7 217 64.1
Nitab4.5_0005541g0070 Nicotiana tabacum HOM05D006420 ORTHO05D008009 7.7e-78 294.7 280 56.8
Carub.0002s0818 Capsella rubella HOM05D006420 ORTHO05D008009 1.2e-75 287.3 217 62.2
HanXRQChr16g0524621 Helianthus annuus HOM05D006420 ORTHO05D008009 1.2e-75 287.3 214 65.9
SpUn0004_0090 Schrenkiella parvula HOM05D006420 ORTHO05D008009 1.2e-75 287.3 217 63.1
AL1G65580 Arabidopsis lyrata HOM05D006420 ORTHO05D008009 1.8e-74 283.5 217 61.8
Potri.013G021600 Populus trichocarpa HOM05D006420 ORTHO05D008009 1.8e-74 283.5 210 66.7
AT1G55000 Arabidopsis thaliana HOM05D006420 ORTHO05D008009 2.3e-74 283.1 217 61.8
Haze_04190 Corylus avellana HOM05D006420 ORTHO05D008009 3.0e-74 282.7 318 49.1
ECA232G4325 Erigeron canadensis HOM05D006420 ORTHO05D008009 8.9e-74 281.2 216 63.9
Sabra13G0024000 Salix brachista HOM05D006420 ORTHO05D008009 3.4e-73 279.3 212 63.7
SGA_v2.0_scaffold81G26063 Striga asiatica HOM05D006420 ORTHO05D000105 1.4e-71 273.9 476 39.7
Zm00001eb054020 Zea mays HOM05D006420 ORTHO05D008009 1.6e-70 270.4 208 59.6
Os03g0699600 Oryza sativa ssp. japonica HOM05D006420 ORTHO05D008009 3.6e-67 259.2 208 58.7
MELO3C004253.2 Cucumis melo HOM05D000208 ORTHO05D000130 3.4e-65 252.7 161 72.7
Pp3c16_5370 Physcomitrium patens HOM05D006420 ORTHO05D008009 3.9e-61 239.2 212 56.1
AagrBONN_evm.TU.Sc2ySwM_368.542 Anthoceros agrestis HOM05D006420 ORTHO05D008009 2.6e-57 226.5 214 50.5
CDE02G2742 Ceratophyllum demersum HOM05D006420 ORTHO05D008009 2.7e-54 216.5 185 62.2
Potri.005G032100 Populus trichocarpa HOM05D006420 ORTHO05D008009 1.3e-48 197.6 157 59.9
SMO356G0643 Selaginella moellendorffii HOM05D006420 ORTHO05D008009 1.6e-46 190.7 208 46.6
MD10G1167700 Malus domestica HOM05D006420 ORTHO05D008009 1.9e-44 183.7 117 72.6
Rhsim07G0185100 Rhododendron simsii HOM05D006420 ORTHO05D008009 1.9e-44 183.7 120 74.2
Eucgr.B01949 Eucalyptus grandis HOM05D006420 ORTHO05D008009 4.2e-39 166.0 112 69.6
vmacro23281 Vaccinium macrocarpon HOM05D006420 ORTHO05D008009 4.2e-39 166.0 99 80.8
Eucgr.B01859 Eucalyptus grandis HOM05D006420 ORTHO05D008009 2.1e-38 163.7 108 70.4
Eucgr.B01946 Eucalyptus grandis HOM05D006420 ORTHO05D008009 8.7e-37 158.3 105 70.5
QL03p007970 Quercus lobata HOM05D006420 ORTHO05D008009 2.4e-34 150.2 115 68.7
QL03p007144 Quercus lobata HOM05D006420 ORTHO05D008009 5.8e-33 145.6 116 68.1
Sabra05G0034600 Salix brachista HOM05D006420 ORTHO05D008009 8.4e-32 141.7 149 50.3
Cre16.g667100 Chlamydomonas reinhardtii HOM05D006420 ORTHO05D008009 2.4e-23 113.6 232 30.6
SEGI_28170 Sequoiadendron giganteum HOM05D006420 ORTHO05D008009 7.1e-23 112.1 82 62.2
QL03p007977 Quercus lobata HOM05D006420 ORTHO05D008009 4.9e-16 89.4 76 57.9
QL03p007137 Quercus lobata HOM05D006420 ORTHO05D008009 2.5e-15 87.0 77 55.8
vmacro23282 Vaccinium macrocarpon HOM05D006420 ORTHO05D008009 6.7e-13 79.0 100 50.0
Thhalv10024156m.g Eutrema salsugineum HOM05D006420 ORTHO05D008009 5.3e-10 69.3 84 41.7
GSVIVG01012047001 Vitis vinifera HOM05D002624 ORTHO05D002796 1.1e-07 61.6 87 37.9
Cre07.g339600 Chlamydomonas reinhardtii HOM05D002624 ORTHO05D002796 7.9e-06 55.5 64 45.3


User provided reference genes

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