Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR365G0172 Trochodendron aralioides HOM05D003564 ORTHO05D028498 2.3e-75 285.4 139 100.0
PGR004G2289 Punica granatum HOM05D003564 ORTHO05D005332 2.2e-49 199.1 138 74.6
TAR633G1064 Trochodendron aralioides HOM05D003564 ORTHO05D005332 8.3e-49 197.2 138 72.5
Nn3g21762 Nelumbo nucifera HOM05D003564 ORTHO05D005332 1.8e-48 196.1 138 73.9
Haze_01331 Corylus avellana HOM05D003564 ORTHO05D005332 5.4e-48 194.5 138 72.5
Haze_01336 Corylus avellana HOM05D003564 ORTHO05D005332 5.4e-48 194.5 138 72.5
Nitab4.5_0005111g0010 Nicotiana tabacum HOM05D003564 ORTHO05D005332 7.0e-48 194.1 138 72.5
Hma1.2p1_0013F.1_g008310 Hydrangea macrophylla HOM05D003564 ORTHO05D005332 9.2e-48 193.7 138 71.7
GSVIVG01034964001 Vitis vinifera HOM05D003564 ORTHO05D005332 9.2e-48 193.7 138 72.5
Lj6A693T63 Lonicera japonica HOM05D003564 ORTHO05D005332 1.2e-47 193.4 138 71.7
Cfa015286 Carpinus fangiana HOM05D003564 ORTHO05D005332 1.6e-47 193.0 138 73.2
Nitab4.5_0000655g0040 Nicotiana tabacum HOM05D003564 ORTHO05D005332 2.0e-47 192.6 138 72.5
PGSC0003DMG400017095 Solanum tuberosum HOM05D003564 ORTHO05D005332 2.7e-47 192.2 138 70.3
Actinidia18464 Actinidia chinensis HOM05D003564 ORTHO05D005332 4.6e-47 191.4 137 71.5
CAN.G311.70 Capsicum annuum HOM05D003564 ORTHO05D028498 4.6e-47 191.4 138 71.0
Peaxi162Scf00164g00106 Petunia axillaris HOM05D003564 ORTHO05D005332 5.9e-47 191.0 138 70.3
Peaxi162Scf00228g00614 Petunia axillaris HOM05D003564 ORTHO05D005332 7.8e-47 190.7 138 71.0
CAN.G281.5 Capsicum annuum HOM05D003564 ORTHO05D005332 1.0e-46 190.3 138 72.5
CiPaw.02G073000 Carya illinoinensis HOM05D003564 ORTHO05D005332 1.0e-46 190.3 138 71.0
Sopen01g023960 Solanum pennellii HOM05D003564 ORTHO05D005332 1.0e-46 190.3 138 70.3
Glyma.17G035800 Glycine max HOM05D003564 ORTHO05D005332 1.3e-46 189.9 138 71.7
Potri.008G102800 Populus trichocarpa HOM05D003564 ORTHO05D005332 1.3e-46 189.9 138 71.7
Glyma.07G237700 Glycine max HOM05D003564 ORTHO05D005332 1.7e-46 189.5 138 71.7
Hma1.2p1_1400F.1_g280900 Hydrangea macrophylla HOM05D003564 ORTHO05D005332 1.7e-46 189.5 138 70.3
Manes.15G001800 Manihot esculenta HOM05D003564 ORTHO05D005332 1.7e-46 189.5 138 69.6
Duzib212G0473 Durio zibethinus HOM05D003564 ORTHO05D005332 2.3e-46 189.1 138 70.3
Rhsim04G0241100 Rhododendron simsii HOM05D003564 ORTHO05D005332 2.3e-46 189.1 138 69.6
Solyc01g058390.3 Solanum lycopersicum HOM05D003564 ORTHO05D005332 3.0e-46 188.7 138 69.6
Potri.010G148100 Populus trichocarpa HOM05D003564 ORTHO05D005332 5.0e-46 188.0 138 71.0
QL06p012801 Quercus lobata HOM05D003564 ORTHO05D005332 5.0e-46 188.0 137 70.1
Lalb_Chr12g0200801 Lupinus albus HOM05D003564 ORTHO05D005332 6.6e-46 187.6 138 69.6
vmacro07948 Vaccinium macrocarpon HOM05D003564 ORTHO05D005332 6.6e-46 187.6 138 69.6
MD16G1150400 Malus domestica HOM05D003564 ORTHO05D005332 8.6e-46 187.2 138 70.3
Oeu001157.1 Olea europaea HOM05D003564 ORTHO05D005332 8.6e-46 187.2 138 69.6
Sabra08G0077700 Salix brachista HOM05D003564 ORTHO05D005332 1.9e-45 186.0 138 69.6
VMungo1215G0911 Vigna mungo HOM05D003564 ORTHO05D005332 1.9e-45 186.0 138 69.6
Ca_21413_v3 Cicer arietinum L. HOM05D003564 ORTHO05D005332 2.5e-45 185.7 138 69.6
Gohir.A09G241000 Gossypium hirsutum HOM05D003564 ORTHO05D005332 2.5e-45 185.7 138 68.1
Gohir.D09G241800 Gossypium hirsutum HOM05D003564 ORTHO05D005332 2.5e-45 185.7 138 68.1
Gorai.006G265300 Gossypium raimondii HOM05D003564 ORTHO05D005332 2.5e-45 185.7 138 68.1
FvH4_4g20200 Fragaria vesca HOM05D003564 ORTHO05D005332 3.3e-45 185.3 138 69.6
FAN07G2223 Fragaria x ananassa HOM05D003564 ORTHO05D005332 3.3e-45 185.3 138 69.6
FAN12G0614 Fragaria x ananassa HOM05D003564 ORTHO05D005332 3.3e-45 185.3 138 69.6
Manes.03G206800 Manihot esculenta HOM05D003564 ORTHO05D005332 3.3e-45 185.3 138 68.8
Oeu046580.1 Olea europaea HOM05D003564 ORTHO05D005332 3.3e-45 185.3 138 68.1
PSO421G0363 Papaver somniferum HOM05D003564 ORTHO05D005332 3.3e-45 185.3 136 68.4
PSO673G0015 Papaver somniferum HOM05D003564 ORTHO05D005332 3.3e-45 185.3 136 68.4
Sabra10G0114300 Salix brachista HOM05D003564 ORTHO05D005332 3.3e-45 185.3 138 70.3
CANSAT78G0776 Cannabis sativa HOM05D003564 ORTHO05D005332 4.3e-45 184.9 138 69.6
Hma1.2p1_0078F.1_g039870 Hydrangea macrophylla HOM05D003564 ORTHO05D005332 4.3e-45 184.9 139 69.8
Sed0006353 Sechium edule HOM05D003564 ORTHO05D005332 4.3e-45 184.9 138 68.8
HPP92_001226 Vanilla planifolia HOM05D003564 ORTHO05D005332 4.3e-45 184.9 138 68.8
CSS0008875 Camellia sinensis var. sinensis HOM05D003564 ORTHO05D005332 5.6e-45 184.5 137 68.6
PGR031G2439 Punica granatum HOM05D003564 ORTHO05D005332 5.6e-45 184.5 138 69.6
TWI09G1018 Tripterygium wilfordii HOM05D003564 ORTHO05D005332 7.3e-45 184.1 138 68.1
CSS0022249 Camellia sinensis var. sinensis HOM05D003564 ORTHO05D005332 9.5e-45 183.7 138 68.8
CANSAT80G1613 Cannabis sativa HOM05D003564 ORTHO05D005332 9.5e-45 183.7 138 69.6
Os03g0832600 Oryza sativa ssp. japonica HOM05D003564 ORTHO05D005332 9.5e-45 183.7 138 67.4
Aqoxy2G02668 Aquilegia oxysepala HOM05D003564 ORTHO05D005332 1.6e-44 183.0 138 68.1
Ciclev10004815m.g Citrus clementina HOM05D003564 ORTHO05D005332 1.6e-44 183.0 138 67.4
COL.COLO4_34584 Corchorus olitorius HOM05D003564 ORTHO05D005332 1.6e-44 183.0 138 68.1
Lalb_Chr07g0181971 Lupinus albus HOM05D003564 ORTHO05D005332 1.6e-44 183.0 138 68.1
MD13G1150000 Malus domestica HOM05D003564 ORTHO05D005332 1.6e-44 183.0 138 67.4
Eucgr.H04065 Eucalyptus grandis HOM05D003564 ORTHO05D005332 2.1e-44 182.6 138 67.4
PSO724G1094 Papaver somniferum HOM05D003564 ORTHO05D005332 2.1e-44 182.6 138 67.4
CDE01G0090 Ceratophyllum demersum HOM05D003564 ORTHO05D005332 2.8e-44 182.2 138 67.4
Lj4g0010100 Lotus japonicus HOM05D003564 ORTHO05D005332 2.8e-44 182.2 138 68.1
Aqoxy6G00955 Aquilegia oxysepala HOM05D003564 ORTHO05D005332 3.6e-44 181.8 138 67.4
ClCG05G006670 Citrullus lanatus HOM05D003564 ORTHO05D005332 3.6e-44 181.8 138 66.7
RcHm_v2.0_Chr4g0425841 Rosa chinensis HOM05D003564 ORTHO05D005332 3.6e-44 181.8 138 68.8
Actinidia13349 Actinidia chinensis HOM05D003564 ORTHO05D005332 4.7e-44 181.4 138 66.7
arahy.Tifrunner.gnm1.ann1.5PE0GF Arachis hypogaea HOM05D003564 ORTHO05D005332 4.7e-44 181.4 138 67.4
Medtr4g122670 Medicago truncatula HOM05D003564 ORTHO05D005332 8.0e-44 180.6 138 68.8
Phvul.003G116700 Phaseolus vulgaris HOM05D003564 ORTHO05D005332 8.0e-44 180.6 138 68.8
arahy.Tifrunner.gnm1.ann1.W3XDQ4 Arachis hypogaea HOM05D003564 ORTHO05D005332 1.0e-43 180.3 138 66.7
TWI73G0893 Tripterygium wilfordii HOM05D003564 ORTHO05D005332 1.0e-43 180.3 138 67.4
DCAR_026993 Daucus carota HOM05D003564 ORTHO05D005332 1.4e-43 179.9 145 63.4
Rhsim02G0002600 Rhododendron simsii HOM05D003564 ORTHO05D005332 1.4e-43 179.9 138 66.7
SEGI_35047 Sequoiadendron giganteum HOM05D003564 ORTHO05D005332 1.4e-43 179.9 138 65.2
CiPaw.01G136200 Carya illinoinensis HOM05D003564 ORTHO05D005332 1.8e-43 179.5 138 65.9
Oeu027343.1 Olea europaea HOM05D003564 ORTHO05D005332 1.8e-43 179.5 138 66.7
Prupe.1G114000 Prunus persica HOM05D003564 ORTHO05D005332 1.8e-43 179.5 138 66.7
AUR62016236 Chenopodium quinoa HOM05D003564 ORTHO05D005332 2.3e-43 179.1 138 66.7
AUR62039254 Chenopodium quinoa HOM05D003564 ORTHO05D005332 2.3e-43 179.1 138 66.7
CsaV3_3G015300 Cucumis sativus L. HOM05D003564 ORTHO05D005332 2.3e-43 179.1 138 66.7
Migut.N00033 Erythranthe guttata HOM05D003564 ORTHO05D005332 2.3e-43 179.1 138 66.7
PSO210G4867 Papaver somniferum HOM05D003564 ORTHO05D005332 2.3e-43 179.1 138 66.7
Psat4g021800 Pisum sativum HOM05D003564 ORTHO05D005332 3.1e-43 178.7 138 68.1
MSTRG.21761 Avicennia marina HOM05D003564 ORTHO05D005332 4.0e-43 178.3 138 66.7
Sc13g0007180 Simmondsia chinensis HOM05D003564 ORTHO05D005332 4.0e-43 178.3 138 65.2
MSTRG.24826 Avicennia marina HOM05D003564 ORTHO05D005332 5.2e-43 177.9 138 65.2
Sed0008581 Sechium edule HOM05D003564 ORTHO05D005332 5.2e-43 177.9 138 65.2
Ah.07g201490 Amaranthus hybridus HOM05D003564 ORTHO05D005332 6.8e-43 177.6 138 64.5
MELO3C006726.2 Cucumis melo HOM05D003564 ORTHO05D005332 6.8e-43 177.6 137 66.4
TPR.G25421 Trifolium pratense HOM05D003564 ORTHO05D005332 1.5e-42 176.4 138 66.7
Ciclev10004814m.g Citrus clementina HOM05D003564 ORTHO05D005332 2.0e-42 176.0 138 65.9
ATR0693G053 Amborella trichopoda HOM05D003564 ORTHO05D005332 2.6e-42 175.6 138 65.2
Hund11987 Selenicereus undatus HOM05D003564 ORTHO05D005332 3.4e-42 175.3 138 65.2
Gohir.A01G035000 Gossypium hirsutum HOM05D003564 ORTHO05D005332 4.4e-42 174.9 137 65.7
Gorai.002G030900 Gossypium raimondii HOM05D003564 ORTHO05D005332 4.4e-42 174.9 137 65.0
HanXRQChr05g0146131 Helianthus annuus HOM05D003564 ORTHO05D005332 4.4e-42 174.9 138 64.5
SGA_v2.0_scaffold367G50068 Striga asiatica HOM05D003564 ORTHO05D005332 5.8e-42 174.5 138 63.8
unitig_22.g6346 Utricularia gibba HOM05D003564 ORTHO05D005332 5.8e-42 174.5 138 63.8
EL10Ac3g05000 Beta vulgaris HOM05D003564 ORTHO05D005332 7.5e-42 174.1 138 65.2
Lj6g0012179 Lotus japonicus HOM05D003564 ORTHO05D005332 7.5e-42 174.1 138 65.2
Gohir.D01G023559 Gossypium hirsutum HOM05D003564 ORTHO05D005332 9.8e-42 173.7 137 65.0
Atru.BG.89.p Acer truncatum HOM05D003564 ORTHO05D005332 1.3e-41 173.3 135 68.1
SGA_v2.0_scaffold227G43230 Striga asiatica HOM05D003564 ORTHO05D005332 1.3e-41 173.3 138 63.8
SalBow5G4452 Salvia bowleyana HOM05D003564 ORTHO05D005332 2.2e-41 172.6 139 65.5
Thhalv10020583m.g Eutrema salsugineum HOM05D003564 ORTHO05D005332 2.9e-41 172.2 138 62.3
THA.LOC104818876 Tarenaya hassleriana HOM05D003564 ORTHO05D005332 2.9e-41 172.2 138 62.3
DCAR_023360 Daucus carota HOM05D003564 ORTHO05D005332 3.7e-41 171.8 138 64.5
Aa31LG2G16960 Aethionema arabicum HOM05D003564 ORTHO05D005332 1.1e-40 170.2 138 63.0
unitig_8.g3092 Utricularia gibba HOM05D001060 ORTHO05D000905 1.1e-40 170.2 136 63.2
Aa31LG5G17120 Aethionema arabicum HOM05D003564 ORTHO05D005332 1.9e-40 169.5 138 63.0
Zm00001eb063430 Zea mays HOM05D003564 ORTHO05D005332 1.9e-40 169.5 138 62.3
CARHR081120 Cardamine hirsuta HOM05D003564 ORTHO05D005332 2.4e-40 169.1 138 60.9
Sp3g05510 Schrenkiella parvula HOM05D003564 ORTHO05D005332 4.1e-40 168.3 138 61.6
C05p60630 Brassica napus HOM05D003564 ORTHO05D001609 5.4e-40 167.9 138 61.6
BolC5t34726H Brassica oleracea HOM05D003564 ORTHO05D005332 5.4e-40 167.9 138 61.6
AT3G06580 Arabidopsis thaliana HOM05D003564 ORTHO05D005332 9.2e-40 167.2 138 60.9
Lsat_1_v5_gn_6_116000 Lactuca sativa HOM05D003564 ORTHO05D005332 9.2e-40 167.2 138 61.6
AL3G17620 Arabidopsis lyrata HOM05D003564 ORTHO05D005332 4.6e-39 164.9 138 58.7
A05p41470 Brassica napus HOM05D003564 ORTHO05D005332 4.6e-39 164.9 135 60.7
BraA05t22867Z Brassica rapa HOM05D003564 ORTHO05D005332 4.6e-39 164.9 135 60.7
Carub.0003s0604 Capsella rubella HOM05D003564 ORTHO05D005332 4.6e-39 164.9 138 59.4
BraA03t12654Z Brassica rapa HOM05D003564 ORTHO05D005332 2.3e-38 162.5 138 60.9
vmacro15172 Vaccinium macrocarpon HOM05D003564 ORTHO05D005332 2.3e-38 162.5 124 66.9
BNapus_Darmor_BZH_scaffold_118p00030 Brassica napus HOM05D003564 ORTHO05D001609 3.0e-38 162.2 138 58.7
BraA01t04431Z Brassica rapa HOM05D003564 ORTHO05D005332 3.0e-38 162.2 138 58.7
A03p34740 Brassica napus HOM05D003564 ORTHO05D005332 5.0e-38 161.4 138 60.1
Cc03_g00630 Coffea canephora HOM05D003564 ORTHO05D028498 6.6e-38 161.0 120 68.3
ECA246G5316 Erigeron canadensis HOM05D003564 ORTHO05D005332 8.6e-38 160.6 130 62.3
Thecc.04G304400 Theobroma cacao HOM05D003564 ORTHO05D005332 8.6e-38 160.6 136 62.5
BolC1t05602H Brassica oleracea HOM05D003564 ORTHO05D005332 1.1e-37 160.2 138 58.7
TAR362G0511 Trochodendron aralioides HOM05D003564 ORTHO05D005332 4.3e-37 158.3 116 68.1
BolC3t16502H Brassica oleracea HOM05D003564 ORTHO05D005332 5.6e-37 157.9 138 60.1
Lj3A833G36 Lonicera japonica HOM05D003564 ORTHO05D005332 1.2e-36 156.8 138 58.7
Hund03137 Selenicereus undatus HOM05D003564 ORTHO05D005332 1.1e-35 153.7 128 60.9
SMO340G0013 Selaginella moellendorffii HOM05D003564 ORTHO05D005332 2.9e-33 145.6 134 54.5
Glyma.08G358832 Glycine max HOM05D003564 ORTHO05D028498 3.7e-33 145.2 120 62.5
Aqoxy2G02665 Aquilegia oxysepala HOM05D000882 ORTHO05D001142 1.2e-31 140.2 139 57.6
Pp3c9_18770 Physcomitrium patens HOM05D003564 ORTHO05D005332 4.6e-31 138.3 138 50.7
Pp3c19_13990 Physcomitrium patens HOM05D003564 ORTHO05D005332 3.9e-30 135.2 138 50.7
AagrBONN_evm.TU.Sc2ySwM_117.3800 Anthoceros agrestis HOM05D003564 ORTHO05D005332 3.3e-29 132.1 138 49.3
Dinv44265 Davidia involucrata HOM05D003564 ORTHO05D005332 5.6e-29 131.3 104 66.3
Mapoly0068s0036 Marchantia polymorpha HOM05D003564 ORTHO05D005332 1.4e-27 126.7 138 50.0
Mapoly0046s0013 Marchantia polymorpha HOM05D003564 ORTHO05D005332 2.3e-27 125.9 138 50.0
CANSAT21G1208 Cannabis sativa HOM05D003564 ORTHO05D005332 1.2e-26 123.6 104 63.5
CBR_g24145 Chara braunii HOM05D003564 ORTHO05D005332 3.2e-24 115.5 122 50.0
MBI19_g03266_MAGBIO Magnolia biondii HOM05D003564 ORTHO05D005332 1.9e-21 106.3 130 49.2
Nitab4.5_0000647g0260 Nicotiana tabacum HOM05D003564 ORTHO05D005332 2.5e-21 105.9 138 44.9
Phvul.010G104600 Phaseolus vulgaris HOM05D003564 ORTHO05D015539 8.9e-19 97.4 140 44.3
MCO14G377 Micromonas commoda HOM05D003564 ORTHO05D005332 8.4e-17 90.9 135 40.0
PRCOL_00002578 Prasinoderma coloniale HOM05D003564 ORTHO05D005332 8.4e-17 90.9 133 39.1
Actinidia14250 Actinidia chinensis HOM05D003564 ORTHO05D004310 5.4e-16 88.2 105 49.5
Cre17.g732300 Chlamydomonas reinhardtii HOM05D003564 ORTHO05D005332 6.0e-15 84.7 123 37.4
Nitab4.5_0004165g0030 Nicotiana tabacum HOM05D003564 ORTHO05D005332 5.6e-13 78.2 41 90.2
Dinv15142 Davidia involucrata HOM05D003564 ORTHO05D005332 1.1e-11 73.9 38 92.1
Cpa.g.sc9.29 Carica papaya HOM05D003564 ORTHO05D005332 1.7e-09 66.6 42 73.8
Sc06g0010690 Simmondsia chinensis HOM05D003564 ORTHO05D389581 9.3e-08 60.8 41 65.9
Sc16g0004630 Simmondsia chinensis HOM05D022636 ORTHO05D389257 5.1e-06 55.1 41 56.1


User provided reference genes

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