Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR365G0161 Trochodendron aralioides HOM05D002444 ORTHO05D009235 1.4e-87 326.2 165 100.0
TAR374G0260 Trochodendron aralioides HOM05D002444 ORTHO05D009235 1.1e-79 300.1 162 93.2
Nn3g21650 Nelumbo nucifera HOM05D002444 ORTHO05D009235 5.8e-41 171.4 162 58.0
Dinv44313 Davidia involucrata HOM05D002444 ORTHO05D009235 9.2e-39 164.1 164 56.7
CSS0000232 Camellia sinensis var. sinensis HOM05D002444 ORTHO05D009235 1.5e-36 156.8 164 52.4
QL02p088731 Quercus lobata HOM05D002444 ORTHO05D009235 2.6e-33 146.0 162 51.9
CiPaw.02G076500 Carya illinoinensis HOM05D002444 ORTHO05D009235 1.9e-31 139.8 163 49.1
Actinidia40353 Actinidia chinensis HOM05D002444 ORTHO05D009235 2.7e-30 136.0 164 48.8
Cpa.g.sc9.92 Carica papaya HOM05D002444 ORTHO05D009235 1.1e-28 130.6 162 45.7
Haze_01077 Corylus avellana HOM05D002444 ORTHO05D009235 9.6e-28 127.5 163 47.2
Rhsim04G0232800 Rhododendron simsii HOM05D002444 ORTHO05D009235 1.6e-27 126.7 164 47.6
Prupe.1G002300 Prunus persica HOM05D002444 ORTHO05D009235 6.2e-27 124.8 167 46.1
Oeu019954.2 Olea europaea HOM05D002444 ORTHO05D009235 8.1e-27 124.4 163 44.2
vmacro08072 Vaccinium macrocarpon HOM05D002444 ORTHO05D009235 1.8e-26 123.2 164 47.6
Hma1.2p1_0078F.1_g040150 Hydrangea macrophylla HOM05D002444 ORTHO05D009235 2.4e-26 122.9 167 45.5
PGSC0003DMG401007553 Solanum tuberosum HOM05D002444 ORTHO05D009235 9.9e-25 117.5 163 43.6
MSTRG.3868 Avicennia marina HOM05D002444 ORTHO05D009235 2.4e-23 112.8 162 42.0
Sopen01g026450 Solanum pennellii HOM05D002444 ORTHO05D009235 4.2e-23 112.1 165 43.6
Nitab4.5_0000169g0070 Nicotiana tabacum HOM05D002444 ORTHO05D009235 1.3e-21 107.1 163 41.1
Nitab4.5_0005333g0010 Nicotiana tabacum HOM05D002444 ORTHO05D009235 3.9e-21 105.5 163 43.6
Lj6C687T6 Lonicera japonica HOM05D002444 ORTHO05D009235 8.7e-21 104.4 172 36.0
Potri.008G108300 Populus trichocarpa HOM05D002444 ORTHO05D009235 3.3e-20 102.4 164 37.8
CAN.G197.15 Capsicum annuum HOM05D002444 ORTHO05D009235 5.6e-20 101.7 164 40.2
DCAR_023334 Daucus carota HOM05D002444 ORTHO05D009235 1.3e-19 100.5 163 36.8
TWI73G0446 Tripterygium wilfordii HOM05D002444 ORTHO05D009235 3.6e-19 99.0 169 36.7
AUR62042953 Chenopodium quinoa HOM05D002444 ORTHO05D009235 4.8e-19 98.6 162 40.7
Cc03_g01100 Coffea canephora HOM05D002444 ORTHO05D009235 1.1e-18 97.4 164 39.6
MBI06_g47069_MAGBIO Magnolia biondii HOM05D002444 ORTHO05D009235 1.1e-18 97.4 166 39.8
SGA_v2.0_scaffold18G08390 Striga asiatica HOM05D002444 ORTHO05D009235 1.1e-18 97.4 162 38.9
EL10Ac3g04919 Beta vulgaris HOM05D002444 ORTHO05D009235 1.4e-18 97.1 162 40.1
Sabra08G0082100 Salix brachista HOM05D002444 ORTHO05D009235 1.8e-18 96.7 167 38.9
SalBow8G2135 Salvia bowleyana HOM05D002444 ORTHO05D009235 2.4e-18 96.3 161 37.3
Migut.G00097 Erythranthe guttata HOM05D002444 ORTHO05D009235 4.0e-18 95.5 162 37.0
Lsat_1_v5_gn_6_19160 Lactuca sativa HOM05D002444 ORTHO05D009235 5.3e-18 95.1 79 58.2
CsaV3_3G015050 Cucumis sativus L. HOM05D002444 ORTHO05D009235 1.2e-17 94.0 166 38.0
AUR62016141 Chenopodium quinoa HOM05D002444 ORTHO05D009235 2.0e-17 93.2 162 40.7
MELO3C006701.2 Cucumis melo HOM05D002444 ORTHO05D009235 5.8e-17 91.7 166 41.0
Thecc.04G296100 Theobroma cacao HOM05D002444 ORTHO05D009235 1.3e-16 90.5 68 61.8
Duzib151G0185 Durio zibethinus HOM05D002444 ORTHO05D009235 3.8e-16 89.0 162 35.8
FvH4_5g29230 Fragaria vesca HOM05D002444 ORTHO05D009235 8.4e-16 87.8 162 38.3
PGR142G0401 Punica granatum HOM05D002444 ORTHO05D009235 8.4e-16 87.8 67 65.7
FAN18G1273 Fragaria x ananassa HOM05D002444 ORTHO05D009235 1.9e-15 86.7 162 38.3
Ah.04g154860 Amaranthus hybridus HOM05D002444 ORTHO05D009235 3.2e-15 85.9 161 36.6
FAN13G1854 Fragaria x ananassa HOM05D002444 ORTHO05D009235 5.5e-15 85.1 162 37.0
Lalb_Chr05g0229111 Lupinus albus HOM05D002444 ORTHO05D009235 5.5e-15 85.1 86 47.7
Sp3g15130 Schrenkiella parvula HOM05D002444 ORTHO05D009235 5.5e-15 85.1 162 34.0
Sed0015924 Sechium edule HOM05D002444 ORTHO05D009235 7.1e-15 84.7 80 51.2
THA.LOC104821798 Tarenaya hassleriana HOM05D002444 ORTHO05D009235 9.3e-15 84.3 67 52.2
MD00G1073300 Malus domestica HOM05D002444 ORTHO05D009235 1.2e-14 84.0 167 37.1
Manes.03G202100 Manihot esculenta HOM05D002444 ORTHO05D009235 1.6e-14 83.6 172 35.5
Gohir.A09G064700 Gossypium hirsutum HOM05D002444 ORTHO05D009235 3.5e-14 82.4 162 35.8
FAN04G0068 Fragaria x ananassa HOM05D002444 ORTHO05D009235 4.6e-14 82.0 67 55.2
MBI06_g47128_MAGBIO Magnolia biondii HOM05D002444 ORTHO05D009235 7.9e-14 81.3 160 38.8
RcHm_v2.0_Chr7g0221991 Rosa chinensis HOM05D002444 ORTHO05D009235 7.9e-14 81.3 162 37.0
AL3G29860 Arabidopsis lyrata HOM05D002444 ORTHO05D009235 1.0e-13 80.9 101 40.6
Carub.0003s1662 Capsella rubella HOM05D002444 ORTHO05D009235 1.0e-13 80.9 82 47.6
Thhalv10022362m.g Eutrema salsugineum HOM05D002444 ORTHO05D009235 1.0e-13 80.9 162 34.0
arahy.Tifrunner.gnm1.ann1.9AMP7R Arachis hypogaea HOM05D002444 ORTHO05D009235 2.3e-13 79.7 68 55.9
Gorai.006G078600 Gossypium raimondii HOM05D002444 ORTHO05D009235 2.3e-13 79.7 162 35.8
unitig_748.g7794 Utricularia gibba HOM05D002444 ORTHO05D009235 5.1e-13 78.6 163 33.7
CANSAT01G1305 Cannabis sativa HOM05D002444 ORTHO05D009235 6.7e-13 78.2 68 55.9
arahy.Tifrunner.gnm1.ann1.48GXQL Arachis hypogaea HOM05D002444 ORTHO05D009235 1.1e-12 77.4 95 44.2
Aa31LG8G3960 Aethionema arabicum HOM05D002444 ORTHO05D009235 1.5e-12 77.0 91 39.6
Sc13g0006330 Simmondsia chinensis HOM05D002444 ORTHO05D009235 2.5e-12 76.3 121 37.2
Lj4g0020012 Lotus japonicus HOM05D002444 ORTHO05D009235 3.3e-12 75.9 67 53.7
COL.COLO4_29076 Corchorus olitorius HOM05D002444 ORTHO05D009235 5.6e-12 75.1 66 50.0
COL.COLO4_34661 Corchorus olitorius HOM05D001121 ORTHO05D009235 5.6e-12 75.1 66 50.0
SHI00166 Sapria himalayana HOM05D002444 ORTHO05D009235 5.6e-12 75.1 111 37.8
A01p37370 Brassica napus HOM05D002444 ORTHO05D009235 7.4e-12 74.7 67 46.3
BraA01t03795Z Brassica rapa HOM05D002444 ORTHO05D009235 7.4e-12 74.7 67 46.3
BolC1t04700H Brassica oleracea HOM05D002444 ORTHO05D009235 1.3e-11 73.9 67 47.8
COL.COLO4_36843 Corchorus olitorius HOM05D002444 ORTHO05D009235 1.6e-11 73.6 66 50.0
Medtr8g070060 Medicago truncatula HOM05D002444 ORTHO05D009235 1.6e-11 73.6 78 46.2
BcaC09g48647 Brassica carinata HOM05D002444 ORTHO05D009235 2.1e-11 73.2 99 37.4
TPR.G24811 Trifolium pratense HOM05D002444 ORTHO05D009235 2.1e-11 73.2 71 49.3
C01p47300 Brassica napus HOM05D002444 ORTHO05D009235 3.7e-11 72.4 99 37.4
Glyma.08G268300 Glycine max HOM05D002444 ORTHO05D009235 1.8e-10 70.1 67 46.3
Psat4g114600 Pisum sativum HOM05D002444 ORTHO05D009235 2.9e-08 62.8 54 53.7
CDE02G3715 Ceratophyllum demersum HOM05D002444 ORTHO05D009235 5.5e-07 58.5 38 63.2
ATR0743G013 Amborella trichopoda HOM05D002444 ORTHO05D009235 7.9e-06 54.7 72 41.7


User provided reference genes

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