Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR365G0160 Trochodendron aralioides HOM05D004860 ORTHO05D006366 1.5e-267 925.6 488 100.0
TAR636G2819 Trochodendron aralioides HOM05D004860 ORTHO05D006366 1.8e-167 593.2 318 92.1
Nn4g26191 Nelumbo nucifera HOM05D004860 ORTHO05D006366 1.7e-157 560.1 319 85.9
GSVIVG01017886001 Vitis vinifera HOM05D004860 ORTHO05D006366 6.3e-152 541.6 306 87.3
CiPaw.02G092200 Carya illinoinensis HOM05D004860 ORTHO05D006366 1.1e-151 540.8 322 83.9
Potri.008G202300 Populus trichocarpa HOM05D004860 ORTHO05D006366 1.1e-151 540.8 318 83.6
CSS0038220 Camellia sinensis var. sinensis HOM05D004860 ORTHO05D006366 1.2e-150 537.3 318 84.0
CANSAT78G2493 Cannabis sativa HOM05D004860 ORTHO05D006366 3.5e-150 535.8 321 82.6
Actinidia40192 Actinidia chinensis HOM05D004860 ORTHO05D006366 7.7e-150 534.6 319 82.1
Thecc.04G221400 Theobroma cacao HOM05D004860 ORTHO05D006366 5.0e-149 531.9 323 81.1
QL06p004255 Quercus lobata HOM05D004860 ORTHO05D006366 3.2e-148 529.3 321 83.2
Dinv38393 Davidia involucrata HOM05D001530 ORTHO05D004168 4.2e-148 528.9 312 84.6
TWI73G0632 Tripterygium wilfordii HOM05D004860 ORTHO05D006366 4.2e-148 528.9 319 83.1
MD16G1183500 Malus domestica HOM05D004860 ORTHO05D006366 7.2e-148 528.1 321 82.2
PGR031G2771 Punica granatum HOM05D004860 ORTHO05D006366 9.4e-148 527.7 318 81.1
COL.COLO4_21645 Corchorus olitorius HOM05D004860 ORTHO05D006366 3.6e-147 525.8 309 83.8
Cc03_g03100 Coffea canephora HOM05D004860 ORTHO05D006366 4.7e-147 525.4 308 82.8
MELO3C006570.2 Cucumis melo HOM05D004860 ORTHO05D006366 4.7e-147 525.4 322 80.1
FvH4_4g14470 Fragaria vesca HOM05D004860 ORTHO05D006366 8.0e-147 524.6 318 81.1
Manes.15G022900 Manihot esculenta HOM05D004860 ORTHO05D006366 8.0e-147 524.6 320 80.3
ClCG05G005460 Citrullus lanatus HOM05D004860 ORTHO05D006366 1.4e-146 523.9 321 80.1
FAN12G3962 Fragaria x ananassa HOM05D004860 ORTHO05D006366 1.4e-146 523.9 318 81.1
Oeu029304.1 Olea europaea HOM05D004860 ORTHO05D006366 1.4e-146 523.9 322 80.4
FAN07G1456 Fragaria x ananassa HOM05D004860 ORTHO05D006366 2.3e-146 523.1 321 80.7
Duzib268G1873 Durio zibethinus HOM05D004860 ORTHO05D006366 3.0e-146 522.7 323 79.9
Gohir.A05G316600 Gossypium hirsutum HOM05D004860 ORTHO05D006366 3.0e-146 522.7 323 80.8
RcHm_v2.0_Chr4g0418381 Rosa chinensis HOM05D004860 ORTHO05D006366 3.0e-146 522.7 321 80.7
Sopen01g031920 Solanum pennellii HOM05D004860 ORTHO05D006366 4.0e-146 522.3 333 77.8
Duzib212G0960 Durio zibethinus HOM05D004860 ORTHO05D006366 5.2e-146 521.9 329 79.6
THA.LOC104822311 Tarenaya hassleriana HOM05D004860 ORTHO05D006366 5.2e-146 521.9 324 79.9
Ah.07g203980 Amaranthus hybridus HOM05D004860 ORTHO05D006366 1.5e-145 520.4 323 80.2
MD13G1182900 Malus domestica HOM05D004860 ORTHO05D006366 1.5e-145 520.4 321 81.3
Solyc01g080140.3 Solanum lycopersicum HOM05D004860 ORTHO05D006366 2.0e-145 520.0 333 77.5
CsaV3_3G013760 Cucumis sativus L. HOM05D004860 ORTHO05D006366 3.3e-145 519.2 322 79.2
Thhalv10013904m.g Eutrema salsugineum HOM05D004860 ORTHO05D006366 3.3e-145 519.2 323 80.2
Glyma.17G017300 Glycine max HOM05D004860 ORTHO05D006366 3.3e-145 519.2 328 79.3
FAN22G2324 Fragaria x ananassa HOM05D004860 ORTHO05D006366 4.4e-145 518.8 329 78.7
THA.LOC104818790 Tarenaya hassleriana HOM05D004860 ORTHO05D006366 5.7e-145 518.5 332 78.9
ECA240G4413 Erigeron canadensis HOM05D004860 ORTHO05D006366 1.7e-144 516.9 303 82.2
Eucgr.D02658 Eucalyptus grandis HOM05D004860 ORTHO05D006366 1.7e-144 516.9 319 80.3
PSO407G0112 Papaver somniferum HOM05D004860 ORTHO05D006366 1.7e-144 516.9 334 79.0
Ciclev10005293m.g Citrus clementina HOM05D004860 ORTHO05D006366 2.2e-144 516.5 318 80.8
MBI17_g12009_MAGBIO Magnolia biondii HOM05D004860 ORTHO05D006366 2.8e-144 516.2 318 82.7
BolC3t13554H Brassica oleracea HOM05D004860 ORTHO05D006366 3.7e-144 515.8 323 79.3
PSO170G1688 Papaver somniferum HOM05D004860 ORTHO05D006366 3.7e-144 515.8 334 79.0
Sed0000368 Sechium edule HOM05D004860 ORTHO05D006366 4.8e-144 515.4 324 78.4
Lalb_Chr07g0177321 Lupinus albus HOM05D004860 ORTHO05D006366 6.3e-144 515.0 319 80.9
Atru.chr4.2574 Acer truncatum HOM05D004860 ORTHO05D006366 1.1e-143 514.2 296 83.4
Lj4g0005512 Lotus japonicus HOM05D004860 ORTHO05D006366 1.1e-143 514.2 321 80.4
BcaB01g04878 Brassica carinata HOM05D004860 ORTHO05D006366 1.8e-143 513.5 323 78.9
BcaB01g05289 Brassica carinata HOM05D004860 ORTHO05D006366 1.8e-143 513.5 323 78.9
Carub.0006s1737 Capsella rubella HOM05D004860 ORTHO05D006366 1.8e-143 513.5 325 79.1
Glyma.07G256800 Glycine max HOM05D004860 ORTHO05D006366 1.8e-143 513.5 328 78.4
AT5G19050 Arabidopsis thaliana HOM05D004860 ORTHO05D006366 2.4e-143 513.1 325 79.1
Sp6g25330 Schrenkiella parvula HOM05D004860 ORTHO05D006366 2.4e-143 513.1 323 79.3
BraA03t10247Z Brassica rapa HOM05D004860 ORTHO05D006366 5.3e-143 511.9 323 78.9
Ca_21591_v3 Cicer arietinum L. HOM05D004860 ORTHO05D006366 7.0e-143 511.5 299 82.6
Aa31LG11G10670 Aethionema arabicum HOM05D004860 ORTHO05D006366 2.0e-142 510.0 334 77.5
AL6G30430 Arabidopsis lyrata HOM05D004860 ORTHO05D006366 2.0e-142 510.0 325 78.8
Gorai.009G340700 Gossypium raimondii HOM05D004860 ORTHO05D006366 2.0e-142 510.0 337 77.2
SalBow5G0733 Salvia bowleyana HOM05D004860 ORTHO05D006366 2.0e-142 510.0 327 78.0
SalBow5G4413 Salvia bowleyana HOM05D004860 ORTHO05D006366 2.0e-142 510.0 327 78.0
TPR.G20138 Trifolium pratense HOM05D004860 ORTHO05D006366 2.7e-142 509.6 323 78.3
CARHR193940 Cardamine hirsuta HOM05D004860 ORTHO05D006366 4.5e-142 508.8 321 79.1
Nitab4.5_0001247g0010 Nicotiana tabacum HOM05D004860 ORTHO05D006366 5.9e-142 508.4 331 77.6
BcaB08g36622 Brassica carinata HOM05D004860 ORTHO05D006366 2.2e-141 506.5 323 78.6
Migut.N00151 Erythranthe guttata HOM05D004860 ORTHO05D006366 2.9e-141 506.1 329 77.8
Medtr4g117310 Medicago truncatula HOM05D004860 ORTHO05D006366 2.9e-141 506.1 328 78.0
MSTRG.24756 Avicennia marina HOM05D004860 ORTHO05D006366 3.8e-141 505.8 332 75.9
BcaC04g18624 Brassica carinata HOM05D004860 ORTHO05D006366 5.0e-141 505.4 321 78.8
arahy.Tifrunner.gnm1.ann1.K193BP Arachis hypogaea HOM05D004860 ORTHO05D006366 8.5e-141 504.6 322 78.9
A10p20640 Brassica napus HOM05D004860 ORTHO05D006366 1.1e-140 504.2 322 78.6
HanXRQChr09g0248101 Helianthus annuus HOM05D004860 ORTHO05D006366 1.1e-140 504.2 291 83.2
arahy.Tifrunner.gnm1.ann1.PDW3QZ Arachis hypogaea HOM05D004860 ORTHO05D006366 1.9e-140 503.4 322 78.3
Psat4g031440 Pisum sativum HOM05D004860 ORTHO05D006366 1.9e-140 503.4 323 78.6
Haze_00965 Corylus avellana HOM05D004860 ORTHO05D006366 3.2e-140 502.7 399 67.2
BolC9t58612H Brassica oleracea HOM05D004860 ORTHO05D006366 5.5e-140 501.9 321 78.5
BraA10t44127Z Brassica rapa HOM05D004860 ORTHO05D006366 9.4e-140 501.1 322 78.3
C09p57430 Brassica napus HOM05D004860 ORTHO05D006366 1.6e-139 500.4 321 78.2
SEGI_28969 Sequoiadendron giganteum HOM05D004860 ORTHO05D006366 1.6e-139 500.4 288 83.3
Aqoxy2G03261 Aquilegia oxysepala HOM05D004860 ORTHO05D006366 2.7e-139 499.6 330 76.7
Cfa015580 Carpinus fangiana HOM05D004860 ORTHO05D006366 3.6e-139 499.2 308 81.8
Phvul.003G093000 Phaseolus vulgaris HOM05D004860 ORTHO05D006366 8.0e-139 498.0 314 77.7
Lj3C761T9 Lonicera japonica HOM05D004860 ORTHO05D006366 1.0e-138 497.7 316 75.6
AUR62030079 Chenopodium quinoa HOM05D004860 ORTHO05D006366 1.4e-138 497.3 284 83.8
C03p10800 Brassica napus HOM05D004860 ORTHO05D006366 2.3e-138 496.5 314 79.3
EL10Ac3g06352 Beta vulgaris HOM05D004860 ORTHO05D006366 3.0e-138 496.1 363 70.5
CDE02G3435 Ceratophyllum demersum HOM05D004860 ORTHO05D006366 3.4e-137 492.7 322 75.5
Os07g0211800 Oryza sativa ssp. japonica HOM05D004860 ORTHO05D006366 3.4e-137 492.7 288 81.9
Ah.13g074180 Amaranthus hybridus HOM05D004860 ORTHO05D006366 9.8e-137 491.1 323 75.5
Lsat_1_v5_gn_7_67361 Lactuca sativa HOM05D004860 ORTHO05D006366 1.1e-135 487.6 320 76.6
Zm00001eb303280 Zea mays HOM05D004860 ORTHO05D006366 2.4e-135 486.5 299 78.9
CiPaw.01G159800 Carya illinoinensis HOM05D004860 ORTHO05D006366 7.0e-135 485.0 321 77.6
unitig_8.g2879 Utricularia gibba HOM05D004860 ORTHO05D006366 2.0e-134 483.4 296 78.7
CAN.G183.30 Capsicum annuum HOM05D004860 ORTHO05D006366 5.9e-134 481.9 323 76.2
Peaxi162Scf01766g00011 Petunia axillaris HOM05D004860 ORTHO05D006366 1.0e-133 481.1 329 74.5
A03p09270 Brassica napus HOM05D004860 ORTHO05D006366 1.1e-132 477.6 306 78.8
Prupe.1G151200 Prunus persica HOM05D004860 ORTHO05D006366 1.5e-132 477.2 270 85.6
Hund12197 Selenicereus undatus HOM05D004860 ORTHO05D000105 3.0e-130 469.5 272 83.1
Cpa.g.sc16.26 Carica papaya HOM05D004860 ORTHO05D006366 6.8e-130 468.4 322 73.9
AUR62038223 Chenopodium quinoa HOM05D004860 ORTHO05D006366 2.6e-129 466.5 270 83.7
Gohir.D05G318100 Gossypium hirsutum HOM05D004860 ORTHO05D006366 7.5e-129 464.9 323 73.7
Dinv44480 Davidia involucrata HOM05D001530 ORTHO05D004168 6.6e-125 451.8 311 74.9
Actinidia12990 Actinidia chinensis HOM05D004860 ORTHO05D006366 1.9e-124 450.3 336 70.8
Sabra08G0159200 Salix brachista HOM05D004860 ORTHO05D006366 9.5e-124 448.0 303 75.6
Lj6A565G28 Lonicera japonica HOM05D004860 ORTHO05D006366 1.6e-123 447.2 272 81.6
Migut.G00288 Erythranthe guttata HOM05D004860 ORTHO05D006366 4.7e-123 445.7 272 79.4
AagrBONN_evm.TU.Sc2ySwM_117.2400 Anthoceros agrestis HOM05D004860 ORTHO05D006366 4.9e-120 435.6 286 72.4
Nn1g02160 Nelumbo nucifera HOM05D004860 ORTHO05D006366 1.8e-119 433.7 271 81.2
Rhsim04G0207200 Rhododendron simsii HOM05D004860 ORTHO05D006366 2.7e-118 429.9 316 71.2
SMO119G0283 Selaginella moellendorffii HOM05D004860 ORTHO05D006366 5.0e-117 425.6 287 73.2
vmacro08274 Vaccinium macrocarpon HOM05D004860 ORTHO05D006366 2.5e-116 423.3 295 75.6
Pp3c4_4720 Physcomitrium patens HOM05D004860 ORTHO05D006366 5.6e-116 422.2 283 69.6
Mapoly0095s0018 Marchantia polymorpha HOM05D004860 ORTHO05D006366 2.3e-114 416.8 299 68.2
TWI53G0789 Tripterygium wilfordii HOM05D004860 ORTHO05D006366 1.9e-111 407.1 251 80.9
ATR0626G115 Amborella trichopoda HOM05D004860 ORTHO05D006366 2.4e-111 406.8 248 83.1
Manes.03G184900 Manihot esculenta HOM05D004860 ORTHO05D006366 6.2e-107 392.1 252 78.2
SGA_v2.0_scaffold166G38376 Striga asiatica HOM05D004860 ORTHO05D006366 6.6e-101 372.1 275 70.5
SalBow2G3077 Salvia bowleyana HOM05D004860 ORTHO05D006366 9.9e-97 358.2 307 63.8
Oeu017197.2 Olea europaea HOM05D004860 ORTHO05D006366 3.5e-94 349.7 228 77.6
Sc13g0003950 Simmondsia chinensis HOM05D004860 ORTHO05D006366 6.4e-88 328.9 213 79.8
VMungo1215G0515 Vigna mungo HOM05D004860 ORTHO05D006366 3.3e-84 316.6 211 78.2
Eucgr.B01143 Eucalyptus grandis HOM05D004860 ORTHO05D006366 4.9e-64 249.6 153 75.8
FAN17G0307 Fragaria x ananassa HOM05D004860 ORTHO05D006366 1.3e-61 241.5 139 81.3
Actinidia23474 Actinidia chinensis HOM05D004860 ORTHO05D006366 3.9e-61 240.0 318 46.9
SHI00370 Sapria himalayana HOM05D004860 ORTHO05D000023 6.7e-61 239.2 139 84.9
HPP92_027344 Vanilla planifolia HOM05D004860 ORTHO05D006366 5.3e-58 229.6 165 76.4
Hund22791 Selenicereus undatus HOM05D004860 ORTHO05D006366 4.2e-55 219.9 132 76.5
Nitab4.5_0002954g0030 Nicotiana tabacum HOM05D004860 ORTHO05D006366 7.4e-52 209.1 153 71.9
Cc02_g31730 Coffea canephora HOM05D004860 ORTHO05D006366 1.2e-49 201.8 108 83.3
VMungo1215G0712 Vigna mungo HOM05D004860 ORTHO05D006366 2.6e-49 200.7 108 84.3
PRCOL_00003006 Prasinoderma coloniale HOM05D004860 ORTHO05D006366 1.0e-37 162.2 325 38.2
Cc09_g08330 Coffea canephora HOM05D004860 ORTHO05D006366 3.0e-37 160.6 112 67.9
CBR_g23274 Chara braunii HOM05D004860 ORTHO05D006366 6.7e-37 159.5 129 58.9
Cre06.g283034 Chlamydomonas reinhardtii HOM05D004860 ORTHO05D006366 1.0e-32 145.6 307 32.6
Cc01_g03740 Coffea canephora HOM05D004860 ORTHO05D006366 1.3e-32 145.2 117 61.5
SHI00369 Sapria himalayana HOM05D004860 ORTHO05D006366 4.5e-25 120.2 121 57.0
HPP92_027343 Vanilla planifolia HOM05D004860 ORTHO05D006366 1.9e-23 114.8 71 76.1
Mapoly0174s0021 Marchantia polymorpha HOM05D004860 ORTHO05D006366 1.2e-22 112.1 108 54.6
DCAR_002416 Daucus carota HOM05D004860 ORTHO05D006366 1.0e-21 109.0 86 60.5
Cfa023854 Carpinus fangiana HOM05D004860 ORTHO05D126341 2.0e-20 104.8 289 30.4
A02p05180 Brassica napus HOM05D004860 ORTHO05D006366 8.3e-19 99.4 92 60.9
BraA02t05478Z Brassica rapa HOM05D004860 ORTHO05D006366 1.1e-18 99.0 93 61.3
Lj6C565T4 Lonicera japonica HOM05D004860 ORTHO05D006366 1.2e-17 95.5 54 75.9
THA.LOC104820105 Tarenaya hassleriana HOM05D001530 ORTHO05D004168 1.6e-17 95.1 53 88.7
DCAR_030597 Daucus carota HOM05D004860 ORTHO05D006366 1.0e-16 92.4 52 80.8
Cc00_g00380 Coffea canephora HOM05D004860 ORTHO05D006366 5.0e-16 90.1 53 77.4
CBR_g23273 Chara braunii HOM05D004860 ORTHO05D006366 4.2e-15 87.0 81 50.6
Cc11_g00440 Coffea canephora HOM05D004860 ORTHO05D005444 6.3e-11 73.2 37 81.1
TAR627G0103 Trochodendron aralioides HOM05D000022 ORTHO05D415496 7.8e-09 66.2 128 36.7
HPP92_017189 Vanilla planifolia HOM05D004860 ORTHO05D006366 1.2e-06 58.9 31 90.3


User provided reference genes

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