Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR365G0062 Trochodendron aralioides HOM05D004553 ORTHO05D005426 6.8e-168 594.0 312 100.0
Nn3g19599 Nelumbo nucifera HOM05D004553 ORTHO05D005426 4.9e-134 481.5 304 82.2
MBI17_g17502_MAGBIO Magnolia biondii HOM05D004553 ORTHO05D005426 7.1e-133 477.6 304 83.9
TAR636G3311 Trochodendron aralioides HOM05D004553 ORTHO05D005426 1.6e-132 476.5 304 84.2
Dinv34597 Davidia involucrata HOM05D004553 ORTHO05D005426 7.9e-132 474.2 301 83.7
Hma1.2p1_0273F.1_g109950 Hydrangea macrophylla HOM05D004553 ORTHO05D005426 2.8e-129 465.7 302 82.8
Ciclev10021217m.g Citrus clementina HOM05D004553 ORTHO05D005426 3.8e-126 455.3 300 80.0
Aqoxy5G00280 Aquilegia oxysepala HOM05D004553 ORTHO05D005426 2.5e-125 452.6 304 78.3
Actinidia21228 Actinidia chinensis HOM05D004553 ORTHO05D005426 3.2e-125 452.2 304 79.3
Cfa002394 Carpinus fangiana HOM05D004553 ORTHO05D005426 4.2e-125 451.8 300 79.3
HanXRQChr10g0281111 Helianthus annuus HOM05D004553 ORTHO05D005426 4.2e-125 451.8 300 79.0
Gohir.A07G211100 Gossypium hirsutum HOM05D004553 ORTHO05D005426 1.6e-124 449.9 291 81.1
GSVIVG01028297001 Vitis vinifera HOM05D004553 ORTHO05D005426 1.6e-124 449.9 301 79.7
Gohir.D07G217100 Gossypium hirsutum HOM05D004553 ORTHO05D005426 6.1e-124 448.0 291 80.8
Actinidia23392 Actinidia chinensis HOM05D004553 ORTHO05D005426 7.9e-124 447.6 301 79.4
Nitab4.5_0000500g0290 Nicotiana tabacum HOM05D004553 ORTHO05D005426 7.9e-124 447.6 301 78.7
Haze_24589 Corylus avellana HOM05D004553 ORTHO05D005426 1.0e-123 447.2 300 79.0
Haze_24593 Corylus avellana HOM05D004553 ORTHO05D005426 1.0e-123 447.2 300 79.0
CAN.G572.12 Capsicum annuum HOM05D004553 ORTHO05D005426 5.1e-123 444.9 301 79.1
Prupe.8G227700 Prunus persica HOM05D004553 ORTHO05D005426 5.1e-123 444.9 299 79.3
Gorai.001G251500 Gossypium raimondii HOM05D004553 ORTHO05D005426 1.5e-122 443.4 291 80.4
COL.COLO4_05596 Corchorus olitorius HOM05D004553 ORTHO05D005426 2.5e-122 442.6 291 79.0
Nitab4.5_0001839g0070 Nicotiana tabacum HOM05D004553 ORTHO05D005426 3.3e-122 442.2 301 78.1
Nitab4.5_0009451g0050 Nicotiana tabacum HOM05D004553 ORTHO05D005426 3.3e-122 442.2 301 78.4
Rhsim01G0266400 Rhododendron simsii HOM05D004553 ORTHO05D005426 3.3e-122 442.2 300 78.7
PGR044G0761 Punica granatum HOM05D004553 ORTHO05D005426 5.7e-122 441.4 300 77.0
Migut.D00406 Erythranthe guttata HOM05D004553 ORTHO05D005426 8.2e-121 437.6 304 76.6
MELO3C012740.2 Cucumis melo HOM05D004553 ORTHO05D005426 1.1e-120 437.2 298 76.5
MD10G1187900 Malus domestica HOM05D004553 ORTHO05D005426 1.4e-120 436.8 301 77.7
Solyc08g077830.1 Solanum lycopersicum HOM05D004553 ORTHO05D005426 1.4e-120 436.8 300 78.0
Sopen08g026340 Solanum pennellii HOM05D004553 ORTHO05D005426 1.4e-120 436.8 300 78.0
MD05G1201100 Malus domestica HOM05D004553 ORTHO05D005426 1.8e-120 436.4 299 78.6
CsaV3_7G026990 Cucumis sativus L. HOM05D004553 ORTHO05D005426 4.1e-120 435.3 300 76.3
TPR.G5760 Trifolium pratense HOM05D004553 ORTHO05D005426 5.3e-120 434.9 295 78.3
PSO675G7515 Papaver somniferum HOM05D004553 ORTHO05D005426 9.0e-120 434.1 299 77.3
PGSC0003DMG400026216 Solanum tuberosum HOM05D004553 ORTHO05D005426 1.2e-119 433.7 302 77.2
TPR.G18834 Trifolium pratense HOM05D004553 ORTHO05D005426 4.5e-119 431.8 296 78.0
AUR62024744 Chenopodium quinoa HOM05D004553 ORTHO05D005426 1.7e-118 429.9 299 75.6
AUR62011903 Chenopodium quinoa HOM05D004553 ORTHO05D005426 2.2e-118 429.5 299 75.6
ClCG09G008080 Citrullus lanatus HOM05D004553 ORTHO05D005426 2.9e-118 429.1 299 74.9
Ah.02g111810 Amaranthus hybridus HOM05D004553 ORTHO05D005426 1.4e-117 426.8 299 75.3
Medtr7g096510 Medicago truncatula HOM05D004553 ORTHO05D005426 1.9e-117 426.4 303 74.3
Potri.005G221700 Populus trichocarpa HOM05D004553 ORTHO05D005426 2.5e-117 426.0 298 76.5
Sed0016387 Sechium edule HOM05D004553 ORTHO05D005426 3.2e-117 425.6 299 73.9
Potri.002G041400 Populus trichocarpa HOM05D004553 ORTHO05D005426 4.2e-117 425.2 291 76.3
Sed0015397 Sechium edule HOM05D004553 ORTHO05D005426 2.7e-116 422.5 299 73.9
Atru.chr5.1915 Acer truncatum HOM05D004553 ORTHO05D005426 1.4e-115 420.2 300 74.3
vmacro03822 Vaccinium macrocarpon HOM05D004553 ORTHO05D005426 1.4e-115 420.2 315 74.6
Duzib138G1605 Durio zibethinus HOM05D004553 ORTHO05D005426 1.8e-115 419.9 291 75.9
Os12g0626100 Oryza sativa ssp. japonica HOM05D004553 ORTHO05D005426 8.8e-115 417.5 299 72.6
Peaxi162Scf00324g00032 Petunia axillaris HOM05D004553 ORTHO05D005426 9.7e-114 414.1 301 73.8
TWI12G0019 Tripterygium wilfordii HOM05D004553 ORTHO05D005426 1.7e-113 413.3 304 71.7
Hund09587 Selenicereus undatus HOM05D004553 ORTHO05D005426 2.8e-113 412.5 299 73.9
SGA_v2.0_scaffold31G12652 Striga asiatica HOM05D004553 ORTHO05D005426 4.8e-113 411.8 311 73.0
Lsat_1_v5_gn_9_9101 Lactuca sativa HOM05D004553 ORTHO05D005426 8.2e-113 411.0 300 73.3
Glyma.03G161100 Glycine max HOM05D004553 ORTHO05D005426 1.2e-111 407.1 291 73.9
Lj1A269G34 Lonicera japonica HOM05D004553 ORTHO05D005426 1.2e-111 407.1 302 73.2
Cc03_g10870 Coffea canephora HOM05D004553 ORTHO05D005426 1.5e-111 406.8 291 75.6
PSO541G5588 Papaver somniferum HOM05D004553 ORTHO05D005426 2.6e-111 406.0 299 72.9
ATR0794G102 Amborella trichopoda HOM05D004553 ORTHO05D005426 4.5e-111 405.2 304 71.1
QL09p037745 Quercus lobata HOM05D004553 ORTHO05D005426 1.0e-110 404.1 300 73.0
Manes.05G087500 Manihot esculenta HOM05D004553 ORTHO05D005426 1.3e-110 403.7 297 71.7
Psat3g059120 Pisum sativum HOM05D004553 ORTHO05D005426 1.3e-110 403.7 303 71.9
VMungo1383G1775 Vigna mungo HOM05D004553 ORTHO05D005426 1.3e-110 403.7 291 72.9
CANSAT21G2336 Cannabis sativa HOM05D004553 ORTHO05D005426 1.7e-110 403.3 296 73.0
Phvul.001G159000 Phaseolus vulgaris HOM05D004553 ORTHO05D005426 1.7e-110 403.3 291 73.2
CiPaw.03G261300 Carya illinoinensis HOM05D004553 ORTHO05D005426 2.2e-110 402.9 291 75.3
arahy.Tifrunner.gnm1.ann1.9FA7V6 Arachis hypogaea HOM05D004553 ORTHO05D005426 2.9e-110 402.5 298 72.1
MSTRG.3646 Avicennia marina HOM05D004553 ORTHO05D005426 2.9e-110 402.5 302 73.2
PSO832G2284 Papaver somniferum HOM05D004553 ORTHO05D005426 6.5e-110 401.4 299 72.2
EL10Ac5g10427 Beta vulgaris HOM05D004553 ORTHO05D005426 1.4e-109 400.2 299 71.2
Cpa.g.sc50.47 Carica papaya HOM05D004553 ORTHO05D005426 1.6e-108 396.7 291 72.5
Ca_02526_v3 Cicer arietinum L. HOM05D004553 ORTHO05D005426 4.7e-108 395.2 292 73.3
FAN27G3448 Fragaria x ananassa HOM05D004553 ORTHO05D005426 6.1e-108 394.8 304 70.7
AT3G58180 Arabidopsis thaliana HOM05D004553 ORTHO05D005426 2.3e-107 392.9 304 68.8
Aa31LG10G12900 Aethionema arabicum HOM05D004553 ORTHO05D005426 6.7e-107 391.3 307 68.4
arahy.Tifrunner.gnm1.ann1.1I5KFR Arachis hypogaea HOM05D004553 ORTHO05D005426 6.7e-107 391.3 298 69.8
BcaC07g40188 Brassica carinata HOM05D004553 ORTHO05D005426 8.8e-107 391.0 291 70.4
Psat0s2295g0120 Pisum sativum HOM05D004553 ORTHO05D005426 2.0e-106 389.8 303 69.6
Lalb_Chr20g0107851 Lupinus albus HOM05D004553 ORTHO05D005426 5.7e-106 388.3 291 71.5
Carub.0005s2503 Capsella rubella HOM05D004553 ORTHO05D005426 7.4e-106 387.9 304 67.8
Sabra02G0033000 Salix brachista HOM05D004553 ORTHO05D005426 7.4e-106 387.9 291 70.8
TWI18G0975 Tripterygium wilfordii HOM05D004553 ORTHO05D005426 7.4e-106 387.9 291 72.2
arahy.Tifrunner.gnm1.ann1.59X69N Arachis hypogaea HOM05D004553 ORTHO05D005426 9.7e-106 387.5 298 69.5
FAN20G1146 Fragaria x ananassa HOM05D004553 ORTHO05D005426 9.7e-106 387.5 303 69.6
Sp5g04540 Schrenkiella parvula HOM05D004553 ORTHO05D005426 1.3e-105 387.1 291 70.4
RcHm_v2.0_Chr6g0288871 Rosa chinensis HOM05D004553 ORTHO05D005426 2.2e-105 386.3 298 70.1
DCAR_009311 Daucus carota HOM05D004553 ORTHO05D005426 6.3e-105 384.8 305 70.2
BcaC07g40268 Brassica carinata HOM05D004553 ORTHO05D005426 1.1e-104 384.0 291 69.8
FvH4_2g22010 Fragaria vesca HOM05D004553 ORTHO05D005426 1.1e-104 384.0 303 69.3
Os12g0163300 Oryza sativa ssp. japonica HOM05D004553 ORTHO05D005426 1.4e-104 383.6 304 67.8
A09p50940 Brassica napus HOM05D004553 ORTHO05D005426 1.8e-104 383.3 292 69.9
BraA09t40540Z Brassica rapa HOM05D004553 ORTHO05D005426 1.8e-104 383.3 292 69.9
BolC8t50975H Brassica oleracea HOM05D004553 ORTHO05D005426 4.1e-104 382.1 292 69.9
Eucgr.K03287 Eucalyptus grandis HOM05D004553 ORTHO05D005426 4.1e-104 382.1 301 67.1
FAN15G2654 Fragaria x ananassa HOM05D004553 ORTHO05D005426 7.0e-104 381.3 310 68.1
DCAR_012530 Daucus carota HOM05D004553 ORTHO05D005426 9.1e-104 380.9 301 68.4
THA.LOC104802841 Tarenaya hassleriana HOM05D004553 ORTHO05D005426 9.1e-104 380.9 296 69.3
Oeu025823.1 Olea europaea HOM05D004553 ORTHO05D005426 1.2e-103 380.6 299 70.9
BcaB02g07544 Brassica carinata HOM05D004553 ORTHO05D005426 3.5e-103 379.0 293 69.6
arahy.Tifrunner.gnm1.ann1.6P10V3 Arachis hypogaea HOM05D004553 ORTHO05D005426 4.5e-103 378.6 298 68.1
AL5G39880 Arabidopsis lyrata HOM05D004553 ORTHO05D005426 1.3e-102 377.1 304 67.4
FAN24G1077 Fragaria x ananassa HOM05D004553 ORTHO05D005426 1.3e-102 377.1 310 67.7
BolC6t37683H Brassica oleracea HOM05D004553 ORTHO05D005426 6.5e-102 374.8 304 66.4
Thhalv10006107m.g Eutrema salsugineum HOM05D004553 ORTHO05D005426 8.5e-102 374.4 291 69.8
BcaC08g44904 Brassica carinata HOM05D004553 ORTHO05D005426 4.2e-101 372.1 303 66.0
C08p33760 Brassica napus HOM05D004553 ORTHO05D005426 1.2e-100 370.5 292 69.2
Zm00001eb259150 Zea mays HOM05D004553 ORTHO05D005426 8.0e-100 367.9 304 66.1
C06p25240 Brassica napus HOM05D004553 ORTHO05D005426 1.2e-98 364.0 304 65.8
SalBow6G2244 Salvia bowleyana HOM05D004553 ORTHO05D005426 2.0e-98 363.2 304 68.1
BraA07t30048Z Brassica rapa HOM05D004553 ORTHO05D005426 7.5e-98 361.3 292 67.8
A07p23970 Brassica napus HOM05D004553 ORTHO05D005426 2.8e-97 359.4 294 67.0
Thecc.01G262600 Theobroma cacao HOM05D004553 ORTHO05D005426 9.1e-96 354.4 233 79.0
unitig_8.g3887 Utricularia gibba HOM05D004553 ORTHO05D005426 1.2e-95 354.0 300 65.3
HPP92_007745 Vanilla planifolia HOM05D004553 ORTHO05D005426 7.7e-95 351.3 300 66.0
ECA247G2484 Erigeron canadensis HOM05D004553 ORTHO05D005426 1.1e-93 347.4 233 78.5
vmacro06125 Vaccinium macrocarpon HOM05D004553 ORTHO05D005426 1.8e-91 340.1 306 65.0
vmacro02641 Vaccinium macrocarpon HOM05D004553 ORTHO05D005426 1.1e-88 330.9 303 63.7
Sc05g0000780 Simmondsia chinensis HOM05D004553 ORTHO05D005426 1.7e-78 297.0 218 71.6
AagrBONN_evm.TU.Sc2ySwM_228.3863 Anthoceros agrestis HOM05D004553 ORTHO05D005426 1.4e-67 260.8 295 53.2
AagrBONN_evm.TU.Sc2ySwM_117.1472 Anthoceros agrestis HOM05D004553 ORTHO05D005426 3.1e-67 259.6 295 52.5
Glyma.19G162800 Glycine max HOM05D001448 ORTHO05D005781 3.0e-62 243.0 228 60.1
CARHR168560 Cardamine hirsuta HOM05D004553 ORTHO05D005426 4.3e-61 239.2 207 63.8
Mapoly0065s0014 Marchantia polymorpha HOM05D004553 ORTHO05D005426 9.5e-61 238.0 234 57.3
Pp3c11_17490 Physcomitrium patens HOM05D004553 ORTHO05D005426 1.2e-58 231.1 291 48.5
Psat2g052960 Pisum sativum HOM05D004553 ORTHO05D005426 4.4e-58 229.2 189 67.2
Cre10.g435550 Chlamydomonas reinhardtii HOM05D004553 ORTHO05D005426 6.4e-57 225.3 296 44.9
SMO304G0012 Selaginella moellendorffii HOM05D004553 ORTHO05D005426 1.9e-53 213.8 297 47.1
HPP92_007825 Vanilla planifolia HOM05D004553 ORTHO05D005426 2.5e-53 213.4 268 50.7
MCO15G119 Micromonas commoda HOM05D004553 ORTHO05D005426 1.4e-51 207.6 320 44.1
CBR_g46193 Chara braunii HOM05D004553 ORTHO05D005426 1.6e-47 194.1 315 39.4
Psat0s2087g0120 Pisum sativum HOM05D004553 ORTHO05D005426 6.6e-46 188.7 119 80.7
CDE04G1470 Ceratophyllum demersum HOM05D004553 ORTHO05D005426 2.1e-44 183.7 119 79.0
Haze_27369 Corylus avellana HOM05D004553 ORTHO05D005426 3.6e-44 183.0 285 39.6
PRCOL_00005471 Prasinoderma coloniale HOM05D004553 ORTHO05D005426 1.3e-41 174.5 299 39.5
SEGI_33857 Sequoiadendron giganteum HOM05D004553 ORTHO05D005426 6.2e-36 155.6 128 64.8
Nn1g02691 Nelumbo nucifera HOM05D004553 ORTHO05D005426 5.3e-35 152.5 95 85.3
Psat0s2088g0080 Pisum sativum HOM05D004553 ORTHO05D005426 1.5e-34 151.0 94 80.9
AT3G62530 Arabidopsis thaliana HOM05D004553 ORTHO05D005426 7.1e-32 142.1 207 44.0
Oeu044898.1 Olea europaea HOM05D004553 ORTHO05D005426 2.4e-27 127.1 219 41.1
Oeu058648.1 Olea europaea HOM05D004553 ORTHO05D005426 5.3e-27 125.9 129 55.8
SEGI_01794 Sequoiadendron giganteum HOM05D004553 ORTHO05D005426 1.5e-26 124.4 92 66.3
CDE04G0333 Ceratophyllum demersum HOM05D004553 ORTHO05D005426 3.5e-23 113.2 80 75.0
BcaC01g01031 Brassica carinata HOM05D004553 ORTHO05D005426 9.6e-21 105.1 163 43.6
C03p87400 Brassica napus HOM05D004553 ORTHO05D005426 9.6e-21 105.1 163 43.6
BolC3t21049H Brassica oleracea HOM05D004553 ORTHO05D005426 9.6e-21 105.1 163 43.6
AagrBONN_evm.TU.Sc2ySwM_228.2479 Anthoceros agrestis HOM05D004553 ORTHO05D005426 1.3e-20 104.8 175 43.4
CARHR168550 Cardamine hirsuta HOM05D004553 ORTHO05D005426 2.1e-20 104.0 72 73.6
FvH4_2g19410 Fragaria vesca HOM05D004553 ORTHO05D005426 5.3e-19 99.4 69 76.8
SHI26037 Sapria himalayana HOM05D004553 ORTHO05D000023 1.7e-17 94.4 171 38.6
Oeu016862.1 Olea europaea HOM05D004553 ORTHO05D005426 2.9e-17 93.6 85 63.5
Oeu041828.1 Olea europaea HOM05D004553 ORTHO05D005426 4.2e-16 89.7 80 58.8
CAN.G159.14 Capsicum annuum HOM05D004553 ORTHO05D005426 1.8e-14 84.3 71 63.4
CAN.G795.4 Capsicum annuum HOM05D004553 ORTHO05D005426 3.0e-14 83.6 71 62.0
Nitab4.5_0002915g0080 Nicotiana tabacum HOM05D000693 ORTHO05D001102 1.5e-13 81.3 111 45.0
Nitab4.5_0002915g0090 Nicotiana tabacum HOM05D004553 ORTHO05D005426 2.5e-08 63.9 97 43.3
AagrBONN_evm.TU.Sc2ySwM_117.2005 Anthoceros agrestis HOM05D004553 ORTHO05D005426 3.6e-07 60.1 59 59.3
CAN.G907.20 Capsicum annuum HOM05D004553 ORTHO05D005426 1.0e-06 58.5 40 70.0


User provided reference genes

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