Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR365G0029 Trochodendron aralioides HOM05D008235 ORTHO05D009358 0.0e+00 1241.1 616 100.0
TAR636G0036 Trochodendron aralioides HOM05D008235 ORTHO05D009358 1.6e-192 676.8 490 69.6
Nn1g09629 Nelumbo nucifera HOM05D008235 ORTHO05D009358 2.9e-109 400.2 571 45.7
Haze_01504 Corylus avellana HOM05D008235 ORTHO05D009358 2.9e-85 320.5 557 40.2
QL10p049494 Quercus lobata HOM05D008235 ORTHO05D009358 7.9e-75 285.8 490 40.6
Dinv22732 Davidia involucrata HOM05D008235 ORTHO05D009358 1.6e-72 278.1 488 37.9
Actinidia34601 Actinidia chinensis HOM05D008235 ORTHO05D009358 6.9e-63 246.1 513 37.2
Actinidia35979 Actinidia chinensis HOM05D008235 ORTHO05D009358 7.1e-60 236.1 514 37.2
GSVIVG01010760001 Vitis vinifera HOM05D008235 ORTHO05D009358 2.3e-58 231.1 514 35.4
Duzib212G0859 Durio zibethinus HOM05D008235 ORTHO05D009358 3.7e-56 223.8 533 34.3
Thecc.04G179500 Theobroma cacao HOM05D008235 ORTHO05D009358 6.3e-56 223.0 535 33.8
CSS0022265 Camellia sinensis var. sinensis HOM05D008235 ORTHO05D009358 1.1e-55 222.2 543 35.2
Potri.007G128500 Populus trichocarpa HOM05D008235 ORTHO05D009358 1.1e-55 222.2 432 37.7
CANSAT78G2326 Cannabis sativa HOM05D008235 ORTHO05D009358 1.8e-55 221.5 493 34.7
Ciclev10019428m.g Citrus clementina HOM05D008235 ORTHO05D009358 5.3e-55 219.9 555 33.0
Dinv44188 Davidia involucrata HOM05D008235 ORTHO05D009358 2.6e-54 217.6 570 32.6
Potri.017G029800 Populus trichocarpa HOM05D008235 ORTHO05D009358 1.7e-53 214.9 426 37.8
CSS0049607 Camellia sinensis var. sinensis HOM05D008235 ORTHO05D009358 1.9e-52 211.5 474 35.7
Gohir.D02G114100 Gossypium hirsutum HOM05D008235 ORTHO05D009358 6.1e-51 206.5 533 33.8
MD04G1040900 Malus domestica HOM05D008235 ORTHO05D009358 2.3e-50 204.5 492 33.5
Aqoxy2G04121 Aquilegia oxysepala HOM05D008235 ORTHO05D009358 1.5e-49 201.8 518 33.2
Manes.04G042909 Manihot esculenta HOM05D008235 ORTHO05D009358 3.7e-48 197.2 443 35.7
Sabra07G0105000 Salix brachista HOM05D008235 ORTHO05D009358 1.8e-47 194.9 525 32.6
Gorai.005G128900 Gossypium raimondii HOM05D008235 ORTHO05D009358 1.2e-46 192.2 534 32.4
Gorai.011G142400 Gossypium raimondii HOM05D008235 ORTHO05D009358 2.0e-46 191.4 535 30.1
Duzib268G0443 Durio zibethinus HOM05D008235 ORTHO05D009358 9.4e-44 182.6 430 31.4
CiPaw.01G099800 Carya illinoinensis HOM05D008235 ORTHO05D009358 1.2e-43 182.2 468 34.4
Manes.11G121000 Manihot esculenta HOM05D008235 ORTHO05D009358 1.6e-43 181.8 428 33.9
Gohir.A03G088800 Gossypium hirsutum HOM05D008235 ORTHO05D009358 6.1e-43 179.9 534 30.9
Sabra17G0019200 Salix brachista HOM05D008235 ORTHO05D009358 9.7e-41 172.6 450 32.0
Gohir.D10G129000 Gossypium hirsutum HOM05D008235 ORTHO05D009358 3.2e-36 157.5 441 28.1
Lalb_Chr22g0352131 Lupinus albus HOM05D008235 ORTHO05D009358 1.6e-35 155.2 435 32.2
Phvul.011G054200 Phaseolus vulgaris HOM05D008235 ORTHO05D009358 1.0e-34 152.5 426 31.2
Gohir.A10G137600 Gossypium hirsutum HOM05D008235 ORTHO05D009358 8.8e-34 149.4 443 28.2
COL.COLO4_07668 Corchorus olitorius HOM05D008235 ORTHO05D009358 1.1e-33 149.1 372 31.5
VMungo1127G1046 Vigna mungo HOM05D008235 ORTHO05D009358 1.4e-31 142.1 431 31.6
vmacro00622 Vaccinium macrocarpon HOM05D008235 ORTHO05D009358 1.3e-29 135.6 519 30.1
PSO675G1581 Papaver somniferum HOM05D066249 ORTHO05D009358 6.5e-29 133.3 409 33.5
Lj3g0014084 Lotus japonicus HOM05D008235 ORTHO05D009358 1.9e-28 131.7 442 30.5
Glyma.11G127600 Glycine max HOM05D008235 ORTHO05D009358 2.5e-28 131.3 402 29.6
Ca_20789_v3 Cicer arietinum L. HOM05D008235 ORTHO05D009358 4.2e-28 130.6 433 29.1
ClCG07G015680 Citrullus lanatus HOM05D008235 ORTHO05D009358 1.2e-27 129.0 443 30.5
CsaV3_4G003430 Cucumis sativus L. HOM05D008235 ORTHO05D009358 2.1e-27 128.3 440 30.9
PSO017G5357 Papaver somniferum HOM05D066249 ORTHO05D009358 4.0e-26 124.0 404 33.7
Glyma.12G052200 Glycine max HOM05D008235 ORTHO05D009358 1.2e-25 122.5 410 29.0
MELO3C017713.2 Cucumis melo HOM05D008235 ORTHO05D009358 4.4e-25 120.6 438 29.7
Oeu053824.1 Olea europaea HOM05D008235 ORTHO05D009358 4.8e-24 117.1 557 26.6
arahy.Tifrunner.gnm1.ann1.TK6P88 Arachis hypogaea HOM05D008235 ORTHO05D009358 1.4e-23 115.5 443 28.0
Rhsim09G0027400 Rhododendron simsii HOM05D008235 ORTHO05D009358 1.2e-22 112.5 435 29.4
RhsimUnG0195000 Rhododendron simsii HOM05D008235 ORTHO05D009358 1.2e-22 112.5 435 29.4
Cpa.g.sc9.283 Carica papaya HOM05D008235 ORTHO05D009358 3.8e-21 107.5 522 25.3
arahy.Tifrunner.gnm1.ann1.V6VI7P Arachis hypogaea HOM05D008235 ORTHO05D009358 1.9e-20 105.1 462 26.0
Glyma.13G344300 Glycine max HOM05D008235 ORTHO05D009358 1.2e-19 102.4 301 32.2
AUR62002309 Chenopodium quinoa HOM05D019141 ORTHO05D009358 1.8e-18 98.6 530 26.0
AUR62015381 Chenopodium quinoa HOM05D019141 ORTHO05D009358 3.0e-18 97.8 509 25.7
Medtr4g067260 Medicago truncatula HOM05D008235 ORTHO05D009358 1.5e-17 95.5 442 27.6
Sed0015774 Sechium edule HOM05D008235 ORTHO05D009358 2.2e-16 91.7 300 29.7
THA.LOC104803712 Tarenaya hassleriana HOM05D009929 ORTHO05D009358 1.8e-15 88.6 288 29.2
TPR.G34237 Trifolium pratense HOM05D008235 ORTHO05D009358 2.4e-15 88.2 419 26.5
Eucgr.A00083 Eucalyptus grandis HOM05D008235 ORTHO05D009358 7.2e-12 76.6 190 30.5
Psat7g208600 Pisum sativum HOM05D008235 ORTHO05D009358 7.2e-12 76.6 107 41.1
Hund03161 Selenicereus undatus HOM05D019141 ORTHO05D009358 7.2e-12 76.6 276 28.3
EL10Ac3g05943 Beta vulgaris HOM05D019141 ORTHO05D009358 2.8e-11 74.7 565 25.0
Duzib151G0752 Durio zibethinus HOM05D008235 ORTHO05D009358 2.8e-11 74.7 134 44.8
Cc03_g12910 Coffea canephora HOM05D008235 ORTHO05D009358 1.4e-10 72.4 420 26.7
Peaxi162Scf01052g00325 Petunia axillaris HOM05D014650 ORTHO05D009358 8.9e-10 69.7 181 32.6
THA.LOC104800392 Tarenaya hassleriana HOM05D009929 ORTHO05D009358 8.9e-10 69.7 337 24.3
HPP92_002743 Vanilla planifolia HOM05D028297 ORTHO05D037162 1.2e-09 69.3 522 23.9
Solyc05g050740.3 Solanum lycopersicum HOM05D014650 ORTHO05D009358 1.5e-09 68.9 202 30.2
Sc13g0006760 Simmondsia chinensis HOM05D008235 ORTHO05D009358 4.4e-09 67.4 140 32.9
Sopen05g029150 Solanum pennellii HOM05D014650 ORTHO05D022197 9.8e-09 66.2 433 25.6
Nn7g37621 Nelumbo nucifera HOM05D008235 ORTHO05D009358 1.3e-08 65.9 95 49.5
Ah.13g072860 Amaranthus hybridus HOM05D019141 ORTHO05D009358 8.3e-08 63.2 355 27.6
CAN.G112.20 Capsicum annuum HOM05D014650 ORTHO05D022197 1.1e-07 62.8 436 25.0
Nitab4.5_0011467g0040 Nicotiana tabacum HOM05D014650 ORTHO05D009358 1.1e-07 62.8 144 33.3
ATR0824G133 Amborella trichopoda HOM05D008235 ORTHO05D009358 2.4e-07 61.6 56 58.9
Sp5g03710 Schrenkiella parvula HOM05D009929 ORTHO05D009358 4.1e-07 60.8 348 23.3
AT3G59430 Arabidopsis thaliana HOM05D009929 ORTHO05D009358 7.0e-07 60.1 349 25.8


User provided reference genes

Program Settings