Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR364G0001 Trochodendron aralioides HOM05D000107 ORTHO05D000062 1.4e-86 322.8 148 100.0
TAR516G0001 Trochodendron aralioides HOM05D000107 ORTHO05D000062 1.7e-39 166.4 254 42.1
TAR193G0003 Trochodendron aralioides HOM05D000107 ORTHO05D000062 1.1e-30 137.1 139 54.7
TAR165G0002 Trochodendron aralioides HOM05D000107 ORTHO05D000062 2.0e-29 132.9 177 43.5
TAR472G0005 Trochodendron aralioides HOM05D000107 ORTHO05D000062 9.8e-24 114.0 212 36.8
TAR110G0001 Trochodendron aralioides HOM05D000107 ORTHO05D003213 2.6e-16 89.4 68 66.2
HanXRQChr05g0141801 Helianthus annuus HOM05D000107 ORTHO05D000062 1.3e-12 77.0 277 23.8
Atru.chr13.1838 Acer truncatum HOM05D000107 ORTHO05D000062 3.9e-12 75.5 119 36.1
PSO732G0638 Papaver somniferum HOM05D000107 ORTHO05D000062 3.9e-12 75.5 80 43.8
HanXRQChr03g0071531 Helianthus annuus HOM05D000107 ORTHO05D000062 8.6e-12 74.3 278 23.7
TAR544G0001 Trochodendron aralioides HOM05D000107 ORTHO05D003213 1.9e-11 73.2 43 74.4
ECA234G1212 Erigeron canadensis HOM05D000107 ORTHO05D000062 2.5e-11 72.8 261 22.6
CANSAT11G0914 Cannabis sativa HOM05D000107 ORTHO05D000062 3.3e-11 72.4 189 27.5
ECA096G0002 Erigeron canadensis HOM05D000107 ORTHO05D000062 3.3e-11 72.4 258 23.3
HanXRQChr04g0099071 Helianthus annuus HOM05D000107 ORTHO05D000062 4.3e-11 72.0 278 23.4
HanXRQChr05g0149051 Helianthus annuus HOM05D000107 ORTHO05D000062 4.3e-11 72.0 278 23.4
PSO675G0798 Papaver somniferum HOM05D000107 ORTHO05D000062 9.5e-11 70.9 80 41.2
ECA246G3624 Erigeron canadensis HOM05D000107 ORTHO05D000062 1.2e-10 70.5 258 22.9
ECA164G0001 Erigeron canadensis HOM05D000107 ORTHO05D000062 1.6e-10 70.1 256 24.2
ECA233G5567 Erigeron canadensis HOM05D000107 ORTHO05D000062 1.6e-10 70.1 256 24.2
Hma1.2p1_0956F.1_g241370 Hydrangea macrophylla HOM05D000107 ORTHO05D000062 2.8e-10 69.3 150 30.0
Rhsim13G0141700 Rhododendron simsii HOM05D000107 ORTHO05D000062 2.8e-10 69.3 136 30.9
CANSAT11G2258 Cannabis sativa HOM05D000107 ORTHO05D000062 3.6e-10 68.9 135 31.9
ECA246G1255 Erigeron canadensis HOM05D000107 ORTHO05D000062 3.6e-10 68.9 179 26.3
RhsimUnG0068500 Rhododendron simsii HOM05D000107 ORTHO05D000062 4.7e-10 68.6 106 36.8
ECA236G2248 Erigeron canadensis HOM05D000107 ORTHO05D000062 8.1e-10 67.8 158 27.2
RcHm_v2.0_Chr2g0127551 Rosa chinensis HOM05D000107 ORTHO05D000062 1.1e-09 67.4 240 25.0
RcHm_v2.0_Chr2g0143321 Rosa chinensis HOM05D000107 ORTHO05D000062 1.1e-09 67.4 240 25.0
PSO493G0002 Papaver somniferum HOM05D000107 ORTHO05D000062 1.4e-09 67.0 86 38.4
Rhsim02G0220700 Rhododendron simsii HOM05D000107 ORTHO05D000062 1.4e-09 67.0 283 21.9
Rhsim06G0085100 Rhododendron simsii HOM05D000107 ORTHO05D000062 1.4e-09 67.0 283 21.9
ECA248G0231 Erigeron canadensis HOM05D000107 ORTHO05D000062 1.8e-09 66.6 254 25.2
Rhsim08G0137300 Rhododendron simsii HOM05D000107 ORTHO05D000062 1.8e-09 66.6 283 22.3
CANSAT78G2036 Cannabis sativa HOM05D000107 ORTHO05D000062 3.1e-09 65.9 250 24.0
CANSAT64G1673 Cannabis sativa HOM05D000107 ORTHO05D000062 4.0e-09 65.5 135 29.6
CANSAT64G2733 Cannabis sativa HOM05D000107 ORTHO05D000062 4.0e-09 65.5 135 29.6
RcHm_v2.0_Chr2g0111791 Rosa chinensis HOM05D000107 ORTHO05D000062 4.0e-09 65.5 260 23.8
Rhsim01G0074900 Rhododendron simsii HOM05D000107 ORTHO05D000062 5.2e-09 65.1 88 37.5
Sopen01g006480 Solanum pennellii HOM05D000107 ORTHO05D000062 6.8e-09 64.7 146 28.8
Sopen05g023540 Solanum pennellii HOM05D000107 ORTHO05D000062 6.8e-09 64.7 146 28.8
Sopen06g007570 Solanum pennellii HOM05D000107 ORTHO05D000062 6.8e-09 64.7 146 28.8
Sopen12g014820 Solanum pennellii HOM05D000107 ORTHO05D000062 6.8e-09 64.7 146 28.8
Sopen07g016840 Solanum pennellii HOM05D000107 ORTHO05D000062 8.9e-09 64.3 116 32.8
HanXRQChr05g0140971 Helianthus annuus HOM05D000107 ORTHO05D000062 1.2e-08 63.9 158 25.9
Ca_26878_v3 Cicer arietinum L. HOM05D000107 ORTHO05D000062 1.5e-08 63.5 152 25.7
Ah.07g199920 Amaranthus hybridus HOM05D000107 ORTHO05D000062 2.6e-08 62.8 139 29.5
Rhsim01G0164300 Rhododendron simsii HOM05D000107 ORTHO05D000062 2.6e-08 62.8 223 26.0
TPR.G25563 Trifolium pratense HOM05D000107 ORTHO05D000062 3.4e-08 62.4 152 26.3
TPR.G5037 Trifolium pratense HOM05D000107 ORTHO05D000062 3.4e-08 62.4 152 26.3
Rhsim04G0140300 Rhododendron simsii HOM05D000107 ORTHO05D000062 4.4e-08 62.0 106 34.9
Sopen11g023140 Solanum pennellii HOM05D000107 ORTHO05D000062 4.4e-08 62.0 44 61.4
Ah.01g013270 Amaranthus hybridus HOM05D000107 ORTHO05D000062 5.8e-08 61.6 139 29.5
Rhsim07G0151800 Rhododendron simsii HOM05D000107 ORTHO05D000062 5.8e-08 61.6 126 29.4
RcHm_v2.0_Chr4g0436001 Rosa chinensis HOM05D000107 ORTHO05D000062 5.8e-08 61.6 175 26.9
TAR344G0003 Trochodendron aralioides HOM05D000107 ORTHO05D000062 5.8e-08 61.6 168 25.6
TAR447G0001 Trochodendron aralioides HOM05D000107 ORTHO05D000062 7.6e-08 61.2 42 69.0
Ah.01g011060 Amaranthus hybridus HOM05D000107 ORTHO05D000062 9.9e-08 60.8 184 26.6
Ah.04g158600 Amaranthus hybridus HOM05D000107 ORTHO05D000062 9.9e-08 60.8 184 26.6
Ah.13g065570 Amaranthus hybridus HOM05D000107 ORTHO05D000062 9.9e-08 60.8 184 26.6
QL05p061366 Quercus lobata HOM05D000107 ORTHO05D000062 9.9e-08 60.8 166 25.9
TPR.G24690 Trifolium pratense HOM05D000107 ORTHO05D000062 9.9e-08 60.8 95 34.7
FvH4_3g12341 Fragaria vesca HOM05D000107 ORTHO05D000062 1.3e-07 60.5 108 32.4
FvH4_1g28182 Fragaria vesca HOM05D000107 ORTHO05D000062 1.7e-07 60.1 44 61.4
Sopen06g005160 Solanum pennellii HOM05D000107 ORTHO05D000062 1.7e-07 60.1 115 33.0
TPR.G18679 Trifolium pratense HOM05D000107 ORTHO05D000062 2.2e-07 59.7 152 25.7
TPR.G30904 Trifolium pratense HOM05D000107 ORTHO05D000062 2.2e-07 59.7 152 24.3
AUR62018291 Chenopodium quinoa HOM05D000107 ORTHO05D000062 2.9e-07 59.3 128 32.8
PSO675G0059 Papaver somniferum HOM05D000107 ORTHO05D000062 2.9e-07 59.3 116 28.4
TAR351G0003 Trochodendron aralioides HOM05D000107 ORTHO05D000062 2.9e-07 59.3 150 28.0
Ah.06g185380 Amaranthus hybridus HOM05D000107 ORTHO05D000062 3.8e-07 58.9 184 26.1
ECA248G0444 Erigeron canadensis HOM05D000107 ORTHO05D000062 3.8e-07 58.9 153 26.1
Atru.chr3.1417 Acer truncatum HOM05D000107 ORTHO05D000062 4.9e-07 58.5 42 61.9
Atru.chr5.1751 Acer truncatum HOM05D000107 ORTHO05D000062 6.4e-07 58.2 175 24.0
CANSAT80G0350 Cannabis sativa HOM05D000107 ORTHO05D000062 6.4e-07 58.2 91 35.2
Ca_02652_v3 Cicer arietinum L. HOM05D000107 ORTHO05D000062 6.4e-07 58.2 258 21.3
Atru.chr11.301 Acer truncatum HOM05D000107 ORTHO05D000062 8.4e-07 57.8 37 59.5
Gorai.010G175300 Gossypium raimondii HOM05D000107 ORTHO05D000062 8.4e-07 57.8 155 25.8
SHI52025 Sapria himalayana HOM05D000648 ORTHO05D000568 8.4e-07 57.8 131 29.8
Sopen02g002150 Solanum pennellii HOM05D000107 ORTHO05D000062 8.4e-07 57.8 44 59.1
Sopen10g012240 Solanum pennellii HOM05D000107 ORTHO05D000385 8.4e-07 57.8 42 61.9
TPR.G32034 Trifolium pratense HOM05D000107 ORTHO05D000062 8.4e-07 57.8 40 57.5
TAR507G0003 Trochodendron aralioides HOM05D000107 ORTHO05D003213 8.4e-07 57.8 74 44.6
Rhsim09G0134500 Rhododendron simsii HOM05D000107 ORTHO05D000062 1.1e-06 57.4 161 25.5
Sopen01g009930 Solanum pennellii HOM05D000107 ORTHO05D000062 1.1e-06 57.4 44 59.1
Sopen01g017910 Solanum pennellii HOM05D000107 ORTHO05D000062 1.1e-06 57.4 44 59.1
TWI34G0305 Tripterygium wilfordii HOM05D000107 ORTHO05D000062 1.1e-06 57.4 42 59.5
Atru.chr6.556 Acer truncatum HOM05D000107 ORTHO05D000062 1.4e-06 57.0 118 28.8
ECA227G0003 Erigeron canadensis HOM05D000107 ORTHO05D000062 1.4e-06 57.0 180 28.3
RhsimUnG0071800 Rhododendron simsii HOM05D000107 ORTHO05D000062 1.4e-06 57.0 107 31.8
TWI74G1678 Tripterygium wilfordii HOM05D000107 ORTHO05D000062 1.4e-06 57.0 39 59.0
TWI79G1319 Tripterygium wilfordii HOM05D000107 ORTHO05D000062 1.4e-06 57.0 44 56.8
Aqoxy6G02003 Aquilegia oxysepala HOM05D000107 ORTHO05D000062 1.9e-06 56.6 134 26.9
AUR62041533 Chenopodium quinoa HOM05D000107 ORTHO05D000062 1.9e-06 56.6 74 40.5
Ca_22878_v3 Cicer arietinum L. HOM05D000107 ORTHO05D000062 1.9e-06 56.6 152 23.7
Rhsim01G0072500 Rhododendron simsii HOM05D000107 ORTHO05D000062 1.9e-06 56.6 253 20.9
CSS0035542 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 2.4e-06 56.2 44 56.8
AUR62028450 Chenopodium quinoa HOM05D003339 ORTHO05D003847 2.4e-06 56.2 45 51.1
FvH4_2g21542 Fragaria vesca HOM05D000107 ORTHO05D000062 2.4e-06 56.2 266 22.9
Rhsim01G0104600 Rhododendron simsii HOM05D000107 ORTHO05D000062 2.4e-06 56.2 255 21.6
Sopen09g024560 Solanum pennellii HOM05D000107 ORTHO05D000062 2.4e-06 56.2 29 82.8
CSS0006285 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 3.2e-06 55.8 44 56.8
CSS0013019 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 3.2e-06 55.8 44 56.8
CSS0013241 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 3.2e-06 55.8 150 24.0
CSS0020176 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 3.2e-06 55.8 44 56.8
CSS0020537 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 3.2e-06 55.8 44 56.8
CSS0022844 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 3.2e-06 55.8 44 56.8
CSS0033153 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 3.2e-06 55.8 44 56.8
CSS0034159 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 3.2e-06 55.8 44 56.8
CSS0036792 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 3.2e-06 55.8 44 56.8
CSS0038506 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 3.2e-06 55.8 44 56.8
CSS0043987 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 3.2e-06 55.8 44 56.8
Ca_13698_v3 Cicer arietinum L. HOM05D000107 ORTHO05D000062 3.2e-06 55.8 40 62.5
MBI09_g18486_MAGBIO Magnolia biondii HOM05D000107 ORTHO05D000062 3.2e-06 55.8 67 40.3
PSO339G0403 Papaver somniferum HOM05D000107 ORTHO05D000062 3.2e-06 55.8 45 48.9
PSO541G4916 Papaver somniferum HOM05D000107 ORTHO05D000062 3.2e-06 55.8 39 59.0
PSO832G1638 Papaver somniferum HOM05D000107 ORTHO05D000062 3.2e-06 55.8 45 48.9
Rhsim05G0124400 Rhododendron simsii HOM05D000107 ORTHO05D000062 3.2e-06 55.8 146 27.4
Rhsim05G0137300 Rhododendron simsii HOM05D000107 ORTHO05D000062 3.2e-06 55.8 256 21.5
Rhsim06G0126900 Rhododendron simsii HOM05D000107 ORTHO05D000062 3.2e-06 55.8 38 57.9
Rhsim11G0023200 Rhododendron simsii HOM05D000107 ORTHO05D000062 3.2e-06 55.8 146 27.4
Rhsim11G0024300 Rhododendron simsii HOM05D000107 ORTHO05D000062 3.2e-06 55.8 146 27.4
Sopen02g004720 Solanum pennellii HOM05D000107 ORTHO05D000062 3.2e-06 55.8 44 59.1
TPR.G7880 Trifolium pratense HOM05D000107 ORTHO05D000062 3.2e-06 55.8 141 27.0
Ah.14g078910 Amaranthus hybridus HOM05D000107 ORTHO05D000062 4.2e-06 55.5 141 27.7
CSS0007461 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 4.2e-06 55.5 150 24.0
CSS0007472 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 4.2e-06 55.5 150 24.0
CSS0007710 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 4.2e-06 55.5 150 24.0
CSS0009480 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 4.2e-06 55.5 150 24.0
CSS0018002 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 4.2e-06 55.5 150 24.0
CSS0028705 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 4.2e-06 55.5 150 24.0
CSS0031171 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 4.2e-06 55.5 150 24.0
CSS0036122 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 4.2e-06 55.5 150 24.0
CSS0047073 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 4.2e-06 55.5 150 24.0
CANSAT54G1071 Cannabis sativa HOM05D000107 ORTHO05D000062 4.2e-06 55.5 210 23.3
PSO339G6582 Papaver somniferum HOM05D000107 ORTHO05D000062 4.2e-06 55.5 42 57.1
Sopen11g019250 Solanum pennellii HOM05D000107 ORTHO05D014265 4.2e-06 55.5 42 57.1
Atru.chr6.2082 Acer truncatum HOM05D000107 ORTHO05D000062 5.4e-06 55.1 145 26.9
AL1G66070 Arabidopsis lyrata HOM05D000107 ORTHO05D000062 5.4e-06 55.1 52 38.5
CAN.G324.18 Capsicum annuum HOM05D000107 ORTHO05D000062 5.4e-06 55.1 52 46.2
AUR62043742 Chenopodium quinoa HOM05D000107 ORTHO05D000062 5.4e-06 55.1 142 31.7
PSO541G4243 Papaver somniferum HOM05D000107 ORTHO05D000062 5.4e-06 55.1 45 46.7
Rhsim01G0079200 Rhododendron simsii HOM05D000107 ORTHO05D000062 5.4e-06 55.1 42 57.1
Rhsim01G0080000 Rhododendron simsii HOM05D000107 ORTHO05D000062 5.4e-06 55.1 42 57.1
Sopen09g017300 Solanum pennellii HOM05D000107 ORTHO05D000062 5.4e-06 55.1 42 59.5
Rhsim01G0178900 Rhododendron simsii HOM05D000107 ORTHO05D000062 7.1e-06 54.7 36 58.3
Rhsim04G0055300 Rhododendron simsii HOM05D000107 ORTHO05D000062 7.1e-06 54.7 36 58.3
Rhsim09G0074400 Rhododendron simsii HOM05D000107 ORTHO05D000062 7.1e-06 54.7 147 25.2
TWI38G1944 Tripterygium wilfordii HOM05D000107 ORTHO05D000062 7.1e-06 54.7 42 57.1
TWI79G1345 Tripterygium wilfordii HOM05D000107 ORTHO05D000062 7.1e-06 54.7 150 26.0
AUR62042873 Chenopodium quinoa HOM05D000107 ORTHO05D000062 9.2e-06 54.3 39 51.3
ECA238G0623 Erigeron canadensis HOM05D000107 ORTHO05D000001 9.2e-06 54.3 87 37.9
Rhsim04G0054900 Rhododendron simsii HOM05D000107 ORTHO05D000062 9.2e-06 54.3 36 58.3
Rhsim10G0126500 Rhododendron simsii HOM05D000107 ORTHO05D000062 9.2e-06 54.3 38 55.3
Rhsim11G0005900 Rhododendron simsii HOM05D000107 ORTHO05D000062 9.2e-06 54.3 38 55.3
Sopen06g014270 Solanum pennellii HOM05D000107 ORTHO05D014265 9.2e-06 54.3 27 88.9


User provided reference genes

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