Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR362G1313 Trochodendron aralioides HOM05D005371 ORTHO05D006863 1.1e-81 306.6 159 100.0
TAR362G1168 Trochodendron aralioides HOM05D005371 ORTHO05D006863 9.1e-68 260.4 241 65.1
TAR633G1547 Trochodendron aralioides HOM05D005371 ORTHO05D006863 6.8e-63 244.2 241 60.6
Actinidia00081 Actinidia chinensis HOM05D005371 ORTHO05D006863 7.7e-59 230.7 241 56.0
CSS0011749 Camellia sinensis var. sinensis HOM05D005371 ORTHO05D006863 3.3e-57 225.3 241 56.4
CSS0026299 Camellia sinensis var. sinensis HOM05D005371 ORTHO05D006863 3.3e-57 225.3 241 56.4
Hma1.2p1_3925F.1_g337960 Hydrangea macrophylla HOM05D005371 ORTHO05D006863 7.2e-57 224.2 241 56.0
vmacro15298 Vaccinium macrocarpon HOM05D005371 ORTHO05D006863 1.2e-56 223.4 236 56.8
Rhsim02G0018900 Rhododendron simsii HOM05D005371 ORTHO05D006863 8.0e-56 220.7 236 55.9
MBI13_g15010_MAGBIO Magnolia biondii HOM05D005371 ORTHO05D006863 1.8e-55 219.5 235 57.0
Nitab4.5_0012725g0010 Nicotiana tabacum HOM05D005371 ORTHO05D006863 1.5e-54 216.5 241 53.9
Lj6P663T68 Lonicera japonica HOM05D005371 ORTHO05D006863 2.0e-54 216.1 241 53.9
Dinv44470 Davidia involucrata HOM05D005371 ORTHO05D006863 4.4e-54 214.9 187 64.7
Nitab4.5_0007396g0010 Nicotiana tabacum HOM05D005371 ORTHO05D006863 5.7e-54 214.5 241 53.5
MELO3C006575.2 Cucumis melo HOM05D005371 ORTHO05D006863 1.7e-53 213.0 241 51.9
PGR031G1359 Punica granatum HOM05D005371 ORTHO05D006863 2.2e-53 212.6 241 52.7
Oeu023656.1 Olea europaea HOM05D005371 ORTHO05D006863 2.9e-53 212.2 241 51.9
CsaV3_3G013820 Cucumis sativus L. HOM05D005371 ORTHO05D006863 3.7e-53 211.8 241 52.3
PGSC0003DMG400035738 Solanum tuberosum HOM05D005371 ORTHO05D006863 4.9e-53 211.5 236 53.4
Aqoxy7G00162 Aquilegia oxysepala HOM05D005371 ORTHO05D006863 6.3e-53 211.1 236 55.5
Peaxi162Scf00589g00036 Petunia axillaris HOM05D005371 ORTHO05D006863 6.3e-53 211.1 236 53.8
Eucgr.B01158 Eucalyptus grandis HOM05D005371 ORTHO05D006863 8.3e-53 210.7 241 51.5
Solyc11g005900.2 Solanum lycopersicum HOM05D005371 ORTHO05D006863 1.1e-52 210.3 236 53.0
Sopen11g001840 Solanum pennellii HOM05D005371 ORTHO05D006863 1.1e-52 210.3 236 53.0
Lj6g0013027 Lotus japonicus HOM05D005371 ORTHO05D006863 1.4e-52 209.9 236 52.1
Hund12213 Selenicereus undatus HOM05D005371 ORTHO05D006863 2.4e-52 209.1 236 53.0
Cc03_g02980 Coffea canephora HOM05D005371 ORTHO05D006863 3.2e-52 208.8 241 52.3
EL10Ac6g13948 Beta vulgaris HOM05D005371 ORTHO05D006863 4.1e-52 208.4 241 53.1
CANSAT78G0247 Cannabis sativa HOM05D005371 ORTHO05D006863 7.0e-52 207.6 241 51.5
DCAR_021293 Daucus carota HOM05D005371 ORTHO05D006863 1.6e-51 206.5 236 52.1
Oeu037674.1 Olea europaea HOM05D005371 ORTHO05D006863 3.5e-51 205.3 241 50.6
AUR62002624 Chenopodium quinoa HOM05D005371 ORTHO05D006863 4.6e-51 204.9 241 51.9
AUR62030040 Chenopodium quinoa HOM05D005371 ORTHO05D006863 4.6e-51 204.9 241 51.9
Prupe.1G149000 Prunus persica HOM05D005371 ORTHO05D006863 4.6e-51 204.9 241 49.8
VMungo0540G1614 Vigna mungo HOM05D000137 ORTHO05D000503 1.3e-50 203.4 241 50.2
Sed0017990 Sechium edule HOM05D005371 ORTHO05D006863 1.7e-50 203.0 241 51.0
Sed0019484 Sechium edule HOM05D005371 ORTHO05D006863 2.3e-50 202.6 198 57.6
Atru.chr4.2593 Acer truncatum HOM05D005371 ORTHO05D006863 3.9e-50 201.8 198 57.6
Lsat_1_v5_gn_8_20540 Lactuca sativa HOM05D005371 ORTHO05D006863 8.6e-50 200.7 241 49.8
MD13G1180900 Malus domestica HOM05D005371 ORTHO05D006863 1.1e-49 200.3 241 49.0
CAN.G652.5 Capsicum annuum HOM05D005371 ORTHO05D006863 2.5e-49 199.1 236 51.3
HPP92_012442 Vanilla planifolia HOM05D005371 ORTHO05D006863 2.5e-49 199.1 201 56.7
ATR0307G094 Amborella trichopoda HOM05D005371 ORTHO05D006863 3.3e-49 198.7 200 58.5
ClCG05G005500 Citrullus lanatus HOM05D005371 ORTHO05D006863 4.3e-49 198.4 233 51.1
Ah.13g074330 Amaranthus hybridus HOM05D005371 ORTHO05D006863 7.3e-49 197.6 241 49.8
Dinv38368 Davidia involucrata HOM05D002181 ORTHO05D003287 7.3e-49 197.6 216 56.0
Potri.008G200600 Populus trichocarpa HOM05D005371 ORTHO05D006863 7.3e-49 197.6 202 56.4
MD16G1181600 Malus domestica HOM05D005371 ORTHO05D006863 1.6e-48 196.4 241 49.0
Phvul.006G155400 Phaseolus vulgaris HOM05D005371 ORTHO05D006863 1.6e-48 196.4 241 48.1
Haze_00980 Corylus avellana HOM05D005371 ORTHO05D006863 2.1e-48 196.1 241 49.0
Haze_00986 Corylus avellana HOM05D005371 ORTHO05D006863 2.1e-48 196.1 241 49.0
Nn2g14732 Nelumbo nucifera HOM05D005371 ORTHO05D006863 2.8e-48 195.7 241 50.6
Sabra08G0160600 Salix brachista HOM05D005371 ORTHO05D006863 2.8e-48 195.7 202 56.9
Gohir.A09G200400 Gossypium hirsutum HOM05D005371 ORTHO05D006863 3.6e-48 195.3 198 57.1
Gohir.D09G194600 Gossypium hirsutum HOM05D005371 ORTHO05D006863 3.6e-48 195.3 198 57.1
Gorai.006G218000 Gossypium raimondii HOM05D005371 ORTHO05D006863 3.6e-48 195.3 198 57.1
TWI53G1142 Tripterygium wilfordii HOM05D005371 ORTHO05D006863 3.6e-48 195.3 198 56.1
Manes.03G186400 Manihot esculenta HOM05D005371 ORTHO05D006863 6.2e-48 194.5 202 56.4
Potri.010G029400 Populus trichocarpa HOM05D005371 ORTHO05D006863 6.2e-48 194.5 202 55.9
Ciclev10005567m.g Citrus clementina HOM05D005371 ORTHO05D006863 8.0e-48 194.1 202 55.9
Gorai.011G168200 Gossypium raimondii HOM05D005371 ORTHO05D006863 8.0e-48 194.1 198 57.1
MSTRG.24760 Avicennia marina HOM05D005371 ORTHO05D006863 1.0e-47 193.7 198 53.5
Cpa.g.sc16.46 Carica papaya HOM05D005371 ORTHO05D006863 1.0e-47 193.7 198 54.0
SalBow2G1082 Salvia bowleyana HOM05D000137 ORTHO05D000503 1.0e-47 193.7 241 46.9
Zm00001eb015260 Zea mays HOM05D005371 ORTHO05D006863 1.0e-47 193.7 198 55.1
CDE02G4078 Ceratophyllum demersum HOM05D005371 ORTHO05D006863 1.4e-47 193.4 202 55.4
Cfa015560 Carpinus fangiana HOM05D005371 ORTHO05D006863 1.8e-47 193.0 241 48.5
CiPaw.01G158300 Carya illinoinensis HOM05D005371 ORTHO05D006863 2.3e-47 192.6 236 48.7
Aa31LG11G10740 Aethionema arabicum HOM05D005371 ORTHO05D006863 3.1e-47 192.2 193 55.4
PSO135G0635 Papaver somniferum HOM05D005371 ORTHO05D006863 4.0e-47 191.8 198 55.1
Sc19g0004630 Simmondsia chinensis HOM05D005371 ORTHO05D006863 4.0e-47 191.8 236 50.8
Thecc.04G219500 Theobroma cacao HOM05D005371 ORTHO05D006863 5.2e-47 191.4 198 56.1
MSTRG.3982 Avicennia marina HOM05D005371 ORTHO05D006863 1.5e-46 189.9 198 53.5
Duzib151G0238 Durio zibethinus HOM05D005371 ORTHO05D006863 1.5e-46 189.9 198 55.6
CARHR194010 Cardamine hirsuta HOM05D005371 ORTHO05D006863 2.0e-46 189.5 193 55.4
COL.COLO4_21626 Corchorus olitorius HOM05D005371 ORTHO05D006863 2.0e-46 189.5 198 55.1
FvH4_4g14220 Fragaria vesca HOM05D005371 ORTHO05D006863 2.0e-46 189.5 241 47.7
RcHm_v2.0_Chr4g0418951 Rosa chinensis HOM05D005371 ORTHO05D006863 2.0e-46 189.5 241 47.7
FAN07G1015 Fragaria x ananassa HOM05D005371 ORTHO05D006863 2.6e-46 189.1 241 47.7
Aa31LG5G16730 Aethionema arabicum HOM05D005371 ORTHO05D006863 3.4e-46 188.7 203 54.2
CsaV3_3G013810 Cucumis sativus L. HOM05D005371 ORTHO05D006863 3.4e-46 188.7 240 47.9
Glyma.15G102400 Glycine max HOM05D005371 ORTHO05D006863 3.4e-46 188.7 238 47.5
Ciclev10026219m.g Citrus clementina HOM05D005371 ORTHO05D006863 4.4e-46 188.3 202 54.5
Thhalv10016095m.g Eutrema salsugineum HOM05D005371 ORTHO05D006863 5.8e-46 188.0 201 54.2
Thhalv10021285m.g Eutrema salsugineum HOM05D005371 ORTHO05D006863 7.5e-46 187.6 180 57.2
Psat1g184760 Pisum sativum HOM05D005371 ORTHO05D006863 7.5e-46 187.6 232 47.8
unitig_8.g3082 Utricularia gibba HOM05D001103 ORTHO05D000954 7.5e-46 187.6 198 51.0
Ca_00612_v3 Cicer arietinum L. HOM05D005371 ORTHO05D006863 9.8e-46 187.2 233 47.6
Sp6g25400 Schrenkiella parvula HOM05D005371 ORTHO05D006863 9.8e-46 187.2 201 54.2
Atru.chr4.2595 Acer truncatum HOM05D005371 ORTHO05D006863 1.7e-45 186.4 197 55.3
AL3G17060 Arabidopsis lyrata HOM05D005371 ORTHO05D006863 1.7e-45 186.4 180 57.2
AT3G06200 Arabidopsis thaliana HOM05D005371 ORTHO05D006863 1.7e-45 186.4 180 57.2
BcaC05g30047 Brassica carinata HOM05D005371 ORTHO05D006863 2.2e-45 186.0 198 54.0
Carub.0006s1730 Capsella rubella HOM05D005371 ORTHO05D006863 2.9e-45 185.7 201 52.7
MELO3C006574.2 Cucumis melo HOM05D005371 ORTHO05D006863 2.9e-45 185.7 240 47.5
HanXRQChr08g0218651 Helianthus annuus HOM05D005371 ORTHO05D006863 3.7e-45 185.3 240 46.7
Glyma.13G210400 Glycine max HOM05D005371 ORTHO05D006863 6.4e-45 184.5 242 47.1
Sp3g05120 Schrenkiella parvula HOM05D005371 ORTHO05D006863 8.3e-45 184.1 180 56.7
Os03g0320900 Oryza sativa ssp. japonica HOM05D005371 ORTHO05D006863 1.1e-44 183.7 197 53.3
Haze_00989 Corylus avellana HOM05D005371 ORTHO05D006863 3.2e-44 182.2 203 51.7
SGA_v2.0_scaffold107G30774 Striga asiatica HOM05D005371 ORTHO05D006863 3.2e-44 182.2 198 49.5
TPR.G28919 Trifolium pratense HOM05D005371 ORTHO05D006863 4.1e-44 181.8 236 45.3
A05p41790 Brassica napus HOM05D005371 ORTHO05D006863 7.0e-44 181.0 180 56.1
BraA05t22898Z Brassica rapa HOM05D005371 ORTHO05D006863 7.0e-44 181.0 180 56.1
Carub.0003s0564 Capsella rubella HOM05D005371 ORTHO05D006863 1.2e-43 180.3 180 56.1
Lalb_Chr20g0118351 Lupinus albus HOM05D005371 ORTHO05D006863 1.2e-43 180.3 198 52.0
CARHR080720 Cardamine hirsuta HOM05D005371 ORTHO05D006863 3.5e-43 178.7 180 53.9
BcaC05g29797 Brassica carinata HOM05D005371 ORTHO05D006863 7.8e-43 177.6 180 55.6
Migut.G00256 Erythranthe guttata HOM05D005371 ORTHO05D006863 1.3e-42 176.8 198 50.5
ECA232G2257 Erigeron canadensis HOM05D005371 ORTHO05D006863 3.9e-42 175.3 242 45.0
Migut.N00142 Erythranthe guttata HOM05D005371 ORTHO05D006863 3.9e-42 175.3 241 44.0
FAN12G2714 Fragaria x ananassa HOM05D005371 ORTHO05D006863 6.6e-42 174.5 196 52.0
Pp3c7_19190 Physcomitrium patens HOM05D005371 ORTHO05D006863 5.6e-41 171.4 198 50.0
QL06p005861 Quercus lobata HOM05D005371 ORTHO05D006863 1.2e-40 170.2 197 48.7
Medtr2g021320 Medicago truncatula HOM05D005371 ORTHO05D006863 2.1e-40 169.5 234 43.2
CsaV3_7G008570 Cucumis sativus L. HOM05D005371 ORTHO05D006863 4.0e-39 165.2 185 51.4
AagrBONN_evm.TU.Sc2ySwM_117.1044 Anthoceros agrestis HOM05D005371 ORTHO05D006863 1.5e-38 163.3 200 48.0
SMO347G0347 Selaginella moellendorffii HOM05D005371 ORTHO05D006863 1.7e-37 159.8 198 48.0
Actinidia08521 Actinidia chinensis HOM05D005371 ORTHO05D006863 1.1e-36 157.1 135 65.2
Mapoly0103s0074 Marchantia polymorpha HOM05D005371 ORTHO05D006863 3.2e-36 155.6 203 45.3
CBR_g4816 Chara braunii HOM05D005371 ORTHO05D006863 7.8e-35 151.0 196 44.9
SEGI_38554 Sequoiadendron giganteum HOM05D005371 ORTHO05D006863 1.1e-31 140.6 95 72.6
CDE06G0660 Ceratophyllum demersum HOM05D005371 ORTHO05D006863 1.4e-31 140.2 133 59.4
PRCOL_00006380 Prasinoderma coloniale HOM05D005371 ORTHO05D006863 3.1e-31 139.0 198 43.4
Cre02.g084950 Chlamydomonas reinhardtii HOM05D005371 ORTHO05D006863 5.2e-31 138.3 197 42.6
CBR_g11013 Chara braunii HOM05D005371 ORTHO05D006863 6.8e-31 137.9 197 43.1
Gohir.D10G151100 Gossypium hirsutum HOM05D005371 ORTHO05D006863 2.2e-29 132.9 135 56.3
MCO11G301 Micromonas commoda HOM05D005371 ORTHO05D006863 4.9e-29 131.7 191 42.9
C05p61030 Brassica napus HOM05D005371 ORTHO05D006863 4.1e-28 128.6 128 55.5
SEGI_16229 Sequoiadendron giganteum HOM05D005371 ORTHO05D006863 4.1e-28 128.6 100 67.0
BolC5t34759H Brassica oleracea HOM05D005371 ORTHO05D006863 1.2e-27 127.1 128 54.7
Gohir.A10G115500 Gossypium hirsutum HOM05D005371 ORTHO05D006863 1.3e-21 107.1 135 50.4
HPP92_028178 Vanilla planifolia HOM05D005371 ORTHO05D006863 2.9e-21 105.9 71 73.2
VMungo1080G0303 Vigna mungo HOM05D005371 ORTHO05D006863 5.6e-17 91.7 141 42.6
FAN17G2777 Fragaria x ananassa HOM05D005371 ORTHO05D006863 3.1e-15 85.9 63 71.4
Pp3s46_30 Physcomitrium patens HOM05D003344 ORTHO05D003981 7.6e-14 81.3 181 32.0
C05p61040 Brassica napus HOM05D000171 ORTHO05D000101 3.8e-13 79.0 107 45.8
BolC5t34761H Brassica oleracea HOM05D000171 ORTHO05D000101 3.8e-13 79.0 107 45.8
MD12G1097700 Malus domestica HOM05D005371 ORTHO05D006863 4.2e-12 75.5 94 46.8
Glyma.08G237000 Glycine max HOM05D005371 ORTHO05D034977 9.3e-12 74.3 46 80.4
HanXRQChr10g0304241 Helianthus annuus HOM05D005371 ORTHO05D006863 1.6e-11 73.6 111 40.5
MELO3C028582.2 Cucumis melo HOM05D005371 ORTHO05D034977 1.9e-09 66.6 58 63.8
VMungo0331G0541 Vigna mungo HOM05D005371 ORTHO05D006863 5.6e-09 65.1 99 42.4
MELO3C018452.2 Cucumis melo HOM05D005371 ORTHO05D006863 1.6e-08 63.5 49 67.3
MD12G1097500 Malus domestica HOM05D005371 ORTHO05D034977 2.1e-08 63.2 45 66.7
Aqoxy7G02261 Aquilegia oxysepala HOM05D005371 ORTHO05D000006 9.0e-07 57.8 84 41.7
Aa31sc1413G10 Aethionema arabicum HOM05D005371 ORTHO05D006863 4.5e-06 55.5 88 37.5
Haze_26384 Corylus avellana HOM05D003344 ORTHO05D003981 9.9e-06 54.3 78 33.3


User provided reference genes

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